Rorug04G0044200

Putative serine esterase (DUF676)

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Forward (+)
6858067 .. 6858482
416 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0044200.1

Sequence Viewer

Length: 321 bp
ATGGCAGCTACCAACAAAAATGATGTTTCTACCAACTATGACAGAAAAAGTGAACAGAAAGCTTTTGATGACACAAAGGAAGAAGAAGCTCAGTTTAGTATTCCAGTCATAGACCTCAAGGGCCTCTCAGATCGAACTAAACGAAAGGGAATACCTGTTGGCTTTTTTCAAATTTTCAATCATGGAATACCTGTTGATGTGCTTGAGGAGAATAAGAATGGGGTACGTGGGTTCTTTGAGCAGGATACTGAAGTACTGAATAAGCAGTTTTATACTCGTGATAAGCGACTAATTGGAGGGGTACTTTTAGATGTAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

106

Amino Acids

12.1

Weight (kDa)

5.41

Isoelectric Point (pI)

37.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 171
AcuI CTGAAG 1 cut(s) 270
AfaI GTAC 3 cut(s) 225, 255, 303
AgsI TTSAA 2 cut(s) 170, 178
AluBI AGCT 3 cut(s) 8, 62, 89
AluI AGCT 3 cut(s) 8, 62, 89
AoxI GGCC 1 cut(s) 121
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 1 cut(s) 171
AspS9I GGNCC 1 cut(s) 121
BaeI ACNNNNGTAYC 4 cut(s) 215, 237, 248, 270
BauI CACGAG 1 cut(s) 276
BbvI GCAGC 1 cut(s) 17
BciVI GTATCC 1 cut(s) 238
BfuI GTATCC 1 cut(s) 238
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
BmcAI AGTACT 1 cut(s) 255
BmgT120I GGNCC 1 cut(s) 121
BpuEI CTTGAG 2 cut(s) 101, 224
BsaAI YACGTR 1 cut(s) 227
Bse1I ACTGG 1 cut(s) 104
BseMII CTCAG 2 cut(s) 104, 141
BseNI ACTGG 1 cut(s) 104
BseRI GAGGAG 1 cut(s) 221
BseXI GCAGC 1 cut(s) 17
BshFI GGCC 1 cut(s) 123
BsnI GGCC 1 cut(s) 123
Bsp143I GATC 1 cut(s) 130
BspANI GGCC 1 cut(s) 123
BspCNI CTCAG 2 cut(s) 103, 140
BsrI ACTGG 1 cut(s) 104
BssMI GATC 1 cut(s) 130
BssSI CACGAG 1 cut(s) 276
Bst2BI CACGAG 1 cut(s) 276
BstBAI YACGTR 1 cut(s) 227
BstDEI CTNAG 2 cut(s) 90, 127
BstKTI GATC 1 cut(s) 133
BstMBI GATC 1 cut(s) 130
BstV1I GCAGC 1 cut(s) 17
BsuI GTATCC 1 cut(s) 238
BsuRI GGCC 1 cut(s) 123
Cfr13I GGNCC 1 cut(s) 121
Csp6I GTAC 3 cut(s) 224, 254, 302
CviAII CATG 1 cut(s) 182
CviJI RGCY 5 cut(s) 8, 62, 89, 123, 162
CviKI_1 RGCY 5 cut(s) 8, 62, 89, 123, 162
CviQI GTAC 3 cut(s) 224, 254, 302
DdeI CTNAG 2 cut(s) 90, 127
DpnI GATC 1 cut(s) 132
DpnII GATC 1 cut(s) 130
Eco57I CTGAAG 1 cut(s) 270
EcoO109I RGGNCCY 1 cut(s) 121
FaeI CATG 1 cut(s) 185
FaiI YATR 5 cut(s) 39, 110, 183, 273, 319
FatI CATG 1 cut(s) 181
Fnu4HI GCNGC 1 cut(s) 6
Fsp4HI GCNGC 1 cut(s) 6
GluI GCNGC 1 cut(s) 6
HaeIII GGCC 1 cut(s) 123
Hin1II CATG 1 cut(s) 185
HindIII AAGCTT 1 cut(s) 60
Hpy166II GTNNAC 1 cut(s) 53
Hpy188I TCNGA 1 cut(s) 130
Hpy188III TCNNGA 1 cut(s) 278
Hpy8I GTNNAC 1 cut(s) 53
HpyCH4IV ACGT 1 cut(s) 226
HpyF3I CTNAG 2 cut(s) 90, 127
HpySE526I ACGT 1 cut(s) 226
Hsp92II CATG 1 cut(s) 185
Kzo9I GATC 1 cut(s) 130
LpnPI CCDG 4 cut(s) 117, 168, 204, 227
Lsp1109I GCAGC 1 cut(s) 17
MaeII ACGT 1 cut(s) 226
MalI GATC 1 cut(s) 132
MboI GATC 1 cut(s) 130
MboII GAAGA 2 cut(s) 92, 95
MluCI AATT 2 cut(s) 171, 291
MnlI CCTC 4 cut(s) 125, 134, 199, 290
NdeII GATC 1 cut(s) 130
NlaIII CATG 1 cut(s) 185
PcsI WCGNNNNNNNCGW 2 cut(s) 139, 283
PkrI GCNGC 1 cut(s) 7
Ppu21I YACGTR 1 cut(s) 227
PspPI GGNCC 1 cut(s) 121
RsaI GTAC 3 cut(s) 225, 255, 303
RsaNI GTAC 3 cut(s) 224, 254, 302
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 1 cut(s) 130
Sau96I GGNCC 1 cut(s) 121
ScaI AGTACT 1 cut(s) 255
SetI ASST 7 cut(s) 10, 64, 91, 117, 157, 193, 229
SmlI CTYRAG 2 cut(s) 116, 203
SmoI CTYRAG 2 cut(s) 116, 203
Sse9I AATT 2 cut(s) 171, 291
TaiI ACGT 1 cut(s) 229
TaqI TCGA 1 cut(s) 133
TasI AATT 2 cut(s) 171, 291
TatI WGTACW 1 cut(s) 253
TseI GCWGC 1 cut(s) 5
XapI RAATTY 1 cut(s) 171
ZrmI AGTACT 1 cut(s) 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.