Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007038.1

Orthogroup ID

OG0007465

Physical Location & Seq

Genomic Coordinates Reverse (-)

91828 .. 98018

Gene Structure 6191 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007038.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1284 bp

atgattgcagccacttctcctgtcaactccgcatccccgatccccgccccgaacccgacccgaacccgccgcccgcgccagctccgcctggggtttccttccttctccgagccaaggctctgtgcgacgcggcccaggatggacttcctgcacagaatcgtaggcggaggctgcttccggggacccacgcgccaggggctgaaggtcgagattgatagcggcggcgaggatatcttcgccgccgccgccaacaacgccgttcccgaacatctcgtcgtcatggtcaatggaattatcggcagtgcttcagattggagatatgctgcagatcagtttgtgaaaaagcttcctgataaagtaattgtgcaccgcagtgaatgtaactcttctagattgacatttgatggagttgacttgatgggtgagaggctagctaaggaggtattagatgttgtcagaaaaaggtcagaggtgcggaaaatttcctttgtcgctcactctttgggggggttggttgcaaggtatgctatcgggatgctttacgaaccttttccaaaacccgaaccctcaggtgataatggtaattgcataattgaagggaatacaaataatttgacacaatcccttgaccagcctcaccaaggtacgattgctggattacaagctatgaattttataacagttgcaacaccacatcttggctcaaggggaaataaacagctcccatttctctgtggtcttccctttcttgaaagaagagcttctcaagctgcccactttattgtggggagatctgggaagcatctcttcctaacagataaagacgatggcaaacctccccttcttcttcgaatggttaatgactctgatgacctgaaattcatgtcagcattacgtgcatttaagcgtcgtgtggcatatgctaatgcaaattttgatcatatggttgggtggagaacttcatcaattcgacgtcaacatgaacttccgaagtccaatctacttgtaacagatgaaaaatatccacatattgtacatgtgaagcaagaaactttagatgatattcataataatgcatcttcagctgctgaaaaccaaaatatcgacttggaagaggagatgatcagaggtctcactcaaataccatgggaacgtgtagatgtcagctttcaaaagagccgacaaagatacattgctcataataccattcaggtcaaaagatattggttgaattctgatggtgctgatgtggttttccatatcatagattacttccttctctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF676

Protein Analysis

427

Amino Acids

47.82

Weight (kDa)

9.22

Isoelectric Point (pI)

46.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007465)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25770 AT4G25770
fragaria_vesca	FvH4_4g08890 FvH4_4g08890 FvH4_4g08890 FvH4_4g08890 FvH4_4g08890 FvH4_4g08890
malus_domestica	MD13G1265600.v1.1 MD16G1266100.v1.1
prunus_persica	Prupe.1G091600_v2.0.a1 Prupe.1G091600_v2.0.a1
pyrus_communis	pycom13g23560 pycom16g23520
rosa_chinensis	RchiOBHm_Chr4g0403551
rosa_laevigata	RLG00000008969
rosa_multiflora	Rmu_sc0007038.1_g000018
rosa_roxburghii	Rroxscaffold_5G00348200
rosa_rugosa	Rorug04G0044100 Rorug04G0044200
rosa_samantha	Rh4AG119400 Rh4BG112400 Rh4CG127400 Rh4DG112100
rosa_wichuraiana	Rw4G009690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	677
AatII	GACGTC	1 cut(s)	976
AccB7I	CCANNNNNTGG	1 cut(s)	698
AccII	CGCG	3 cut(s)	76, 130, 190
AclWI	GGATC	1 cut(s)	34
AcsI	RAATTY	5 cut(s)	480, 670, 878, 931, 1231
AcuI	CTGAAG	3 cut(s)	221, 291, 1065
AcyI	GRCGYC	1 cut(s)	973
AfaI	GTAC	2 cut(s)	646, 1035
AfiI	CCNNNNNNNGG	3 cut(s)	114, 641, 698
AflIII	ACRYGT	2 cut(s)	1036, 1153
AgsI	TTSAA	4 cut(s)	596, 752, 1172, 1231
AjnI	CCWGG	3 cut(s)	87, 134, 192
AleI	CACNNNNGTG	1 cut(s)	372
AluBI	AGCT	9 cut(s)	82, 346, 434, 665, 721, 761, 770, 1085, 1167
AluI	AGCT	9 cut(s)	82, 346, 434, 665, 721, 761, 770, 1085, 1167
Alw21I	GWGCWC	1 cut(s)	369
Alw26I	GTCTC	1 cut(s)	1136
Alw44I	GTGCAC	1 cut(s)	365
AlwI	GGATC	1 cut(s)	34
AlwNI	CAGNNNCTG	2 cut(s)	199, 1088
AoxI	GGCC	1 cut(s)	131
ApaLI	GTGCAC	1 cut(s)	365
ApeKI	GCWGC	5 cut(s)	8, 171, 323, 770, 1085
ApoI	RAATTY	5 cut(s)	480, 670, 878, 931, 1231
ArsI	GACNNNNNNTTYG	2 cut(s)	258, 290
Asp700I	GAANNNNTTC	2 cut(s)	549, 760
AspLEI	GCGC	2 cut(s)	78, 192
AspS9I	GGNCC	2 cut(s)	132, 182
AsuC2I	CCSGG	1 cut(s)	179
AsuHPI	GGTGA	3 cut(s)	434, 584, 629
AsuII	TTCGAA	1 cut(s)	850
AsuNHI	GCTAGC	1 cut(s)	430
AvaII	GGWCC	1 cut(s)	182
AxyI	CCTNAGG	1 cut(s)	568
BaeGI	GKGCMC	1 cut(s)	369
BbsI	GAAGAC	1 cut(s)	731
Bbv12I	GWGCWC	1 cut(s)	369
BbvI	GCAGC	5 cut(s)	20, 158, 310, 757, 1072
BccI	CCATC	5 cut(s)	133, 398, 412, 821, 1232
BceAI	ACGGC	1 cut(s)	242
BciT130I	CCWGG	3 cut(s)	89, 136, 194
BclI	TGATCA	2 cut(s)	937, 1122
BcnI	CCSGG	1 cut(s)	179
BcoDI	GTCTC	1 cut(s)	1136
BfaI	CTAG	2 cut(s)	390, 431
BfmI	CTRYAG	1 cut(s)	324
BglII	AGATCT	1 cut(s)	791
Bme1390I	CCNGG	4 cut(s)	89, 136, 179, 194
Bme18I	GGWCC	1 cut(s)	182
BmgT120I	GGNCC	2 cut(s)	132, 182
BmiI	GGNNCC	2 cut(s)	183, 184
BmrFI	CCNGG	4 cut(s)	89, 136, 179, 194
BmsI	GCATC	4 cut(s)	41, 525, 811, 1085
BmtI	GCTAGC	1 cut(s)	434
BpiI	GAAGAC	1 cut(s)	731
Bpu10I	CCTNAGC	1 cut(s)	435
Bpu14I	TTCGAA	1 cut(s)	850
BpuEI	CTTGAG	2 cut(s)	688, 750
BpuMI	CCSGG	1 cut(s)	179
BsaAI	YACGTR	1 cut(s)	896
BsaHI	GRCGYC	1 cut(s)	973
BsaI	GGTCTC	1 cut(s)	1136
BsaJI	CCNNGG	7 cut(s)	88, 113, 134, 178, 193, 640, 1145
Bsc4I	CCNNNNNNNGG	3 cut(s)	114, 641, 698
Bse21I	CCTNAGG	1 cut(s)	568
Bse3DI	GCAATG	1 cut(s)	1191
BseBI	CCWGG	3 cut(s)	89, 136, 194
BseDI	CCNNGG	7 cut(s)	88, 113, 134, 178, 193, 640, 1145
BseGI	GGATG	3 cut(s)	32, 144, 540
BseLI	CCNNNNNNNGG	3 cut(s)	114, 641, 698
BseMI	GCAATG	1 cut(s)	1191
BseMII	CTCAG	1 cut(s)	582
BseRI	GAGGAG	1 cut(s)	1130
BseSI	GKGCMC	1 cut(s)	369
BseXI	GCAGC	5 cut(s)	20, 158, 310, 757, 1072
BsgI	GTGCAG	1 cut(s)	134
Bsh1236I	CGCG	3 cut(s)	76, 130, 190
BshFI	GGCC	1 cut(s)	133
BsiHKAI	GWGCWC	1 cut(s)	369
BsiSI	CCGG	1 cut(s)	178
BslFI	GGGAC	1 cut(s)	195
BslI	CCNNNNNNNGG	3 cut(s)	114, 641, 698
BsmAI	GTCTC	1 cut(s)	1136
BsmFI	GGGAC	1 cut(s)	195
BsnI	GGCC	1 cut(s)	133
Bso31I	GGTCTC	1 cut(s)	1136
Bsp119I	TTCGAA	1 cut(s)	850
Bsp1286I	GDGCHC	1 cut(s)	369
Bsp1407I	TGTACA	1 cut(s)	1033
Bsp143I	GATC	5 cut(s)	39, 328, 791, 937, 1122
Bsp19I	CCATGG	1 cut(s)	1145
BspANI	GGCC	1 cut(s)	133
BspCNI	CTCAG	1 cut(s)	581
BspFNI	CGCG	3 cut(s)	76, 130, 190
BspLI	GGNNCC	2 cut(s)	183, 184
BspMAI	CTGCAG	1 cut(s)	328
BspOI	GCTAGC	1 cut(s)	434
BspPI	GGATC	1 cut(s)	34
BspQI	GCTCTTC	1 cut(s)	751
BspT104I	TTCGAA	1 cut(s)	850
BspTNI	GGTCTC	1 cut(s)	1136
BsrDI	GCAATG	1 cut(s)	1191
BsrGI	TGTACA	1 cut(s)	1033
BssECI	CCNNGG	7 cut(s)	88, 113, 134, 178, 193, 640, 1145
BssMI	GATC	5 cut(s)	39, 328, 791, 937, 1122
BssNI	GRCGYC	1 cut(s)	973
BssT1I	CCWWGG	3 cut(s)	113, 640, 1145
Bst2UI	CCWGG	3 cut(s)	89, 136, 194
Bst4CI	ACNGT	1 cut(s)	682
Bst6I	CTCTTC	4 cut(s)	391, 751, 812, 1107
BstACI	GRCGYC	1 cut(s)	973
BstAPI	GCANNNNNTGC	2 cut(s)	524, 896
BstAUI	TGTACA	1 cut(s)	1033
BstBAI	YACGTR	1 cut(s)	896
BstBI	TTCGAA	1 cut(s)	850
BstC8I	GCNNGC	3 cut(s)	74, 80, 432
BstDEI	CTNAG	2 cut(s)	435, 568
BstDSI	CCRYGG	1 cut(s)	1145
BstENI	CCTNNNNNAGG	1 cut(s)	639
BstF5I	GGATG	3 cut(s)	32, 144, 540
BstFNI	CGCG	3 cut(s)	76, 130, 190
BstHHI	GCGC	2 cut(s)	78, 192
BstKTI	GATC	5 cut(s)	42, 331, 794, 940, 1125
BstMAI	GTCTC	1 cut(s)	1136
BstMBI	GATC	5 cut(s)	39, 328, 791, 937, 1122
BstNI	CCWGG	3 cut(s)	89, 136, 194
BstNSI	RCATGY	1 cut(s)	1040
BstSCI	CCNGG	4 cut(s)	87, 134, 177, 192
BstSFI	CTRYAG	1 cut(s)	324
BstSLI	GKGCMC	1 cut(s)	369
BstUI	CGCG	3 cut(s)	76, 130, 190
BstV1I	GCAGC	5 cut(s)	20, 158, 310, 757, 1072
BstV2I	GAAGAC	1 cut(s)	731
BstX2I	RGATCY	1 cut(s)	791
BstYI	RGATCY	1 cut(s)	791
Bsu36I	CCTNAGG	1 cut(s)	568
BsuRI	GGCC	1 cut(s)	133
BtgI	CCRYGG	1 cut(s)	1145
BtsCI	GGATG	3 cut(s)	32, 144, 540
BtsI	GCAGTG	2 cut(s)	307, 379
BtsIMutI	CAGTG	2 cut(s)	307, 379
Cac8I	GCNNGC	3 cut(s)	74, 80, 432
CaiI	CAGNNNCTG	2 cut(s)	199, 1088
CfoI	GCGC	2 cut(s)	78, 192
Cfr13I	GGNCC	2 cut(s)	132, 182
CseI	GACGC	2 cut(s)	136, 896
Csp6I	GTAC	2 cut(s)	645, 1034
CviAII	CATG	5 cut(s)	280, 883, 980, 1037, 1146
CviQI	GTAC	2 cut(s)	645, 1034
DdeI	CTNAG	2 cut(s)	435, 568
DpnI	GATC	5 cut(s)	41, 330, 793, 939, 1124
DpnII	GATC	5 cut(s)	39, 328, 791, 937, 1122
Eam1104I	CTCTTC	4 cut(s)	391, 751, 812, 1107
EarI	CTCTTC	4 cut(s)	391, 751, 812, 1107
EciI	GGCGGA	2 cut(s)	74, 180
Eco130I	CCWWGG	3 cut(s)	113, 640, 1145
Eco31I	GGTCTC	1 cut(s)	1136
Eco32I	GATATC	1 cut(s)	232
Eco47I	GGWCC	1 cut(s)	182
Eco57I	CTGAAG	3 cut(s)	221, 291, 1065
Eco81I	CCTNAGG	1 cut(s)	568
EcoNI	CCTNNNNNAGG	1 cut(s)	639
EcoO109I	RGGNCCY	1 cut(s)	182
EcoRI	GAATTC	1 cut(s)	1231
EcoRII	CCWGG	3 cut(s)	87, 134, 192
EcoRV	GATATC	1 cut(s)	232
EcoT14I	CCWWGG	3 cut(s)	113, 640, 1145
EcoT22I	ATGCAT	1 cut(s)	1078
ErhI	CCWWGG	3 cut(s)	113, 640, 1145
FaeI	CATG	5 cut(s)	283, 886, 983, 1040, 1149
FalI	AAGNNNNNCTT	4 cut(s)	745, 777, 791, 823
FaqI	GGGAC	1 cut(s)	195
FatI	CATG	5 cut(s)	279, 882, 979, 1036, 1145
FauI	CCCGC	3 cut(s)	52, 74, 81
FauNDI	CATATG	2 cut(s)	919, 942
FbaI	TGATCA	2 cut(s)	937, 1122
FokI	GGATG	3 cut(s)	19, 151, 547
FspBI	CTAG	2 cut(s)	390, 431
GlaI	GCGC	2 cut(s)	77, 191
HaeIII	GGCC	1 cut(s)	133
HapII	CCGG	1 cut(s)	178
HgaI	GACGC	2 cut(s)	136, 896
HhaI	GCGC	2 cut(s)	78, 192
Hin1I	GRCGYC	1 cut(s)	973
Hin1II	CATG	5 cut(s)	283, 886, 983, 1040, 1149
Hin6I	GCGC	2 cut(s)	76, 190
HinP1I	GCGC	2 cut(s)	76, 190
HincII	GTYRAC	3 cut(s)	25, 412, 977
HindII	GTYRAC	3 cut(s)	25, 412, 977
HindIII	AAGCTT	1 cut(s)	344
HinfI	GANTC	2 cut(s)	156, 863
HpaII	CCGG	1 cut(s)	178
HphI	GGTGA	3 cut(s)	434, 584, 629
Hpy166II	GTNNAC	4 cut(s)	25, 367, 412, 977
Hpy188I	TCNGA	8 cut(s)	109, 310, 458, 469, 868, 990, 1127, 1237
Hpy188III	TCNNGA	6 cut(s)	208, 263, 350, 390, 532, 749
Hpy8I	GTNNAC	4 cut(s)	25, 367, 412, 977
Hpy99I	CGWCG	4 cut(s)	130, 278, 912, 975
HpyAV	CCTTC	5 cut(s)	108, 112, 196, 590, 851
HpyCH4III	ACNGT	1 cut(s)	682
HpyCH4IV	ACGT	3 cut(s)	895, 973, 1153
HpyF3I	CTNAG	2 cut(s)	435, 568
HpySE526I	ACGT	3 cut(s)	895, 973, 1153
Hsp92I	GRCGYC	1 cut(s)	973
Hsp92II	CATG	5 cut(s)	283, 886, 983, 1040, 1149
HspAI	GCGC	2 cut(s)	76, 190
KflI	GGGWCCC	1 cut(s)	182
Ksp22I	TGATCA	2 cut(s)	937, 1122
Kzo9I	GATC	5 cut(s)	39, 328, 791, 937, 1122
LguI	GCTCTTC	1 cut(s)	751
LmnI	GCTCC	2 cut(s)	87, 726
Lsp1109I	GCAGC	5 cut(s)	20, 158, 310, 757, 1072
LweI	GCATC	4 cut(s)	41, 525, 811, 1085
MaeI	CTAG	2 cut(s)	390, 431
MaeII	ACGT	3 cut(s)	895, 973, 1153
MaeIII	GTNAC	2 cut(s)	380, 1006
MalI	GATC	5 cut(s)	41, 330, 793, 939, 1124
MboI	GATC	5 cut(s)	39, 328, 791, 937, 1122
MboII	GAAGA	9 cut(s)	226, 378, 731, 768, 799, 836, 839, 1071, 1124
MflI	RGATCY	1 cut(s)	791
MhlI	GDGCHC	1 cut(s)	369
MlyI	GAGTC	1 cut(s)	857
Mph1103I	ATGCAT	1 cut(s)	1078
MroXI	GAANNNNTTC	2 cut(s)	549, 760
MseI	TTAA	2 cut(s)	858, 903
MslI	CAYNNNNRTG	2 cut(s)	372, 1071
MspA1I	CMGCKG	1 cut(s)	1085
MspI	CCGG	1 cut(s)	178
MspR9I	CCNGG	4 cut(s)	89, 136, 179, 194
MvaI	CCWGG	3 cut(s)	89, 136, 194
MvnI	CGCG	3 cut(s)	76, 130, 190
NciI	CCSGG	1 cut(s)	179
NcoI	CCATGG	1 cut(s)	1145
NdeI	CATATG	2 cut(s)	919, 942
NdeII	GATC	5 cut(s)	39, 328, 791, 937, 1122
NheI	GCTAGC	1 cut(s)	430
NlaIII	CATG	5 cut(s)	283, 886, 983, 1040, 1149
NlaIV	GGNNCC	2 cut(s)	183, 184
NsiI	ATGCAT	1 cut(s)	1078
NspI	RCATGY	1 cut(s)	1040
NspV	TTCGAA	1 cut(s)	850
OliI	CACNNNNGTG	1 cut(s)	372
PciI	ACATGT	1 cut(s)	1036
PciSI	GCTCTTC	1 cut(s)	751
PcsI	WCGNNNNNNNCGW	1 cut(s)	261
PdmI	GAANNNNTTC	2 cut(s)	549, 760
PfeI	GAWTC	1 cut(s)	156
PflMI	CCANNNNNTGG	1 cut(s)	698
PleI	GAGTC	1 cut(s)	857
PpsI	GAGTC	1 cut(s)	857
Ppu21I	YACGTR	1 cut(s)	896
PpuMI	RGGWCCY	1 cut(s)	182
PscI	ACATGT	1 cut(s)	1036
PsiI	TTATAA	1 cut(s)	677
Psp5II	RGGWCCY	1 cut(s)	182
Psp6I	CCWGG	3 cut(s)	87, 134, 192
PspGI	CCWGG	3 cut(s)	87, 134, 192
PspN4I	GGNNCC	2 cut(s)	183, 184
PspPI	GGNCC	2 cut(s)	132, 182
PspPPI	RGGWCCY	1 cut(s)	182
PstI	CTGCAG	1 cut(s)	328
PstNI	CAGNNNCTG	2 cut(s)	199, 1088
PsuI	RGATCY	1 cut(s)	791
PvuII	CAGCTG	1 cut(s)	1085
RsaI	GTAC	2 cut(s)	646, 1035
RsaNI	GTAC	2 cut(s)	645, 1034
RseI	CAYNNNNRTG	2 cut(s)	372, 1071
SapI	GCTCTTC	1 cut(s)	751
SaqAI	TTAA	2 cut(s)	858, 903
Sau3AI	GATC	5 cut(s)	39, 328, 791, 937, 1122
Sau96I	GGNCC	2 cut(s)	132, 182
SchI	GAGTC	1 cut(s)	857
ScrFI	CCNGG	4 cut(s)	89, 136, 179, 194
SduI	GDGCHC	1 cut(s)	369
SfaNI	GCATC	4 cut(s)	41, 525, 811, 1085
SfcI	CTRYAG	1 cut(s)	324
SfuI	TTCGAA	1 cut(s)	850
SinI	GGWCC	1 cut(s)	182
SmiMI	CAYNNNNRTG	2 cut(s)	372, 1071
SmlI	CTYRAG	2 cut(s)	703, 765
SmoI	CTYRAG	2 cut(s)	703, 765
SspMI	CTAG	2 cut(s)	390, 431
StyD4I	CCNGG	4 cut(s)	87, 134, 177, 192
StyI	CCWWGG	3 cut(s)	113, 640, 1145
TaaI	ACNGT	1 cut(s)	682
TaiI	ACGT	3 cut(s)	898, 976, 1156
TaqI	TCGA	4 cut(s)	207, 850, 970, 1104
TatI	WGTACW	1 cut(s)	1033
TauI	GCSGC	7 cut(s)	72, 133, 222, 225, 242, 245, 248
TfiI	GAWTC	1 cut(s)	156
Tru1I	TTAA	2 cut(s)	858, 903
Tru9I	TTAA	2 cut(s)	858, 903
TscAI	CASTG	2 cut(s)	307, 379
TseI	GCWGC	5 cut(s)	8, 171, 323, 770, 1085
TspDTI	ATGAA	6 cut(s)	683, 871, 951, 996, 1029, 1055
TspRI	CASTG	2 cut(s)	307, 379
Van91I	CCANNNNNTGG	1 cut(s)	698
VneI	GTGCAC	1 cut(s)	365
VpaK11BI	GGWCC	1 cut(s)	182
XagI	CCTNNNNNAGG	1 cut(s)	639
XapI	RAATTY	5 cut(s)	480, 670, 878, 931, 1231
XbaI	TCTAGA	1 cut(s)	389
XceI	RCATGY	1 cut(s)	1040
XmnI	GAANNNNTTC	2 cut(s)	549, 760
XspI	CTAG	2 cut(s)	390, 431
ZraI	GACGTC	1 cut(s)	974
Zsp2I	ATGCAT	1 cut(s)	1078

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.