Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0003761

Physical Location & Seq

Genomic Coordinates Forward (+)

54360246 .. 54370427

Gene Structure 10182 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009549

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2367 bp

ATGGCTTCGGCTCAGGTGTTGCCCAATTCGACGCGGAAACAAGAACATTTGGAAGCTGGAAAGCGCCGGCTGGAGGAGTTCCGTAAGAAAAAAGCAGCAGAAAGGGCTAAGAAGACGTCATCTTCTAGCCAGGTCAATGTCTCTGAAGTTAGCTCAAATGAGAAACAACCTATAGAAACTGTACGGGTTACAGTCTCAGATGGAGCTGGTACATCTGATGGGCCTGTGGGTGGTTTCACTGAAGCTTCTTCTGTAATATCGAGCAACGGTGACAACGCCATTGATTTTTCCCACCAAAAGGAACATGCTTCTTCAAATAATACACACAGTAGTTCTTCAACAAATGATTCTAATGCATTTTCTGTAGATCAAGAATATAAGAGATTTGGTGTCTCAGGTTTTCCTGGGCCCTCAGATGTTGATTATAGCTATGACATAAAAGGGATGAATAATGATGTTGAAAAAGATATTGGTACCTTAGGTGTTTTACCATATGGACCCGCTTCTAACCATCCTATTGCTCTACGTCCACAAGCAAGTCAAGAATTTGAAAGCCACACAAGCCAATCCAGCTTTTATGGGATTCAGTCCTCAGAACATAAACTTTCTTCGAGGGATTCCGTAGGTGCGGGTTTGGGTACATCTCAACAATCTGTTGCAAAAATCTCTCCTCAGAACTCTGTCAGCACATTTCTACAAAGTGAGGCCGGTAGTTTCAGCACAATGGCTAGTGGCCCTCCTTCATCATCTTCACTTTATCAAGACTTGATTCAACCTAGTACCAGTGCAAGAGGGTTTGCTCAAGAAGTTGGAAAAAGCATGCGTGGTGGTACTGCAGACTTCGGTGATCCTGTAACTTTCAGATTTGGAGAAGGAAAACTAAGTAGCTCTGCAAGTGGTATGCCTAGCTTGCAGAGTGCACAAGTGCAAACATCTGAATCCACTGGTTTTGGATATGATGCTAGAAGTTTGTCCAATCATGTACAGCTAGAGTCAGTTACACCTGATACTAGTTCTAGGAGATCTCGTCCATCATTCCTTGATTCTCTTAATGTTTATAAGGCTTCTTCCGGGAGTCCTTTTCAACAAGCTGAGCCTGAGGAGTCATATTTCTCCAACAGTTCTAAATCAAATGGCATGAGCTCCCTGGGATCACTGCCTTTCCATAAGCCATCTGTGGACGATGGACCACTTGCACCTCATTCATTTGAGCATTCCAATAAGTCTTCATTTCCTCCTAGTGCTGGGGTGGACCAGCAGAGGCCAATAGTTGAAAGTGGCTTGGACAGAAAACACGAGTTCTATTCATCTAAGCAAAATGACGATTTTGCAGCTTTGGAACAGCACATTGAAGATTTGACACAAGAAAAATTTTCTTTGCAACGAGCACTCGAGGCTTCACGTGCTTTAGCTGAGTCATTGGCTTCTGAAAATTCTTCTTTGACAGAGACTTATAATCAACAGAGAAGCGTTGTTGACCAATTAAAATCTGACCTGGAAACGTTACAAGCGGAGATCAAGGCCCAGCTGGTGGAACTTGAGGCTGTCAGAAATGAATATGCAAATGCCCAGCTAGAATGTAATGCAGCTGATGAACGTTCCAAGTTATTGGCTTCTGAAGTTATTGGTTTGGAGGAGAAGGCACTCAGACTAAGGTCAAGTGAGCTAAAGCTGGAGAGGCAATTGGAGAACTCACAAGCCGAAATCTCTTCATACAAAAAAAGATTGTCTAGCCTAGAAAAAGACCGTTCGGATTTGCAGTCAACTATCAGTGCTCTTCAGGAAGAAAAGAAGCTATTGCAGTCTATGCTACGGAAAGCTTCCACTAACGAAAGGAAAGCTGATGATAGCAAGAGTACTACTTACACGAAAGATGTGTATACTTCTACAGAAGATCTAGACGAGGAGGTCAGTCCCGACACTGTAGACCAGGAAATGCGTGATGCCTCCAGTTTCCCGATGCTGCCGGAAAATGGACAGTCAAGTTTTGATGTCTCATCTGTGAATATACCTCCTGATCAGATGCGAACAATTGAGAACATCAATACACTAGTTTCTGAGTTAGCATTAGAGAAAGAAGAGTTGATACAATCTTTGGCATCTGAGACATCTCATTGCTCCAAGTTGAAGGAACTGAACAATGAATTGTCTCGGAAACTTGAGGCTCAAACTCAGAGATTAGAGCTTTTGACTGCCCAAAGTATGGCTAATGAGAGTGTTCCAATCAGGCAACCTATTTCGCACGATGTGCCTGACAGTACTCCATATGCAGATGAAGGGGATGAGGTGGTAGAAAGGGTCTTGGGATGGATTATGAAACTTTTTCCCGGAGGGCCATCAAGACGAAGAACTAGTAAGCTTCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010026 GO:0010090 GO:0010091 GO:0010154 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048468 GO:0048518 GO:0048522 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051302 GO:0051781 GO:0060255 GO:0061458 GO:0065007 GO:0071840 GO:0080090 GO:0090558 GO:0090567 GO:0090626 GO:0090698 GO:0099402 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

789

Amino Acids

85.99

Weight (kDa)

5.04

Isoelectric Point (pI)

61.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003761)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23980
fragaria_vesca	FvH4_4g05311 FvH4_4g05311 FvH4_4g05311 FvH4_4g05311
malus_domestica	MD13G1227500.v1.1 MD16G1232700.v1.1
prunus_persica	Prupe.1G054700_v2.0.a1 Prupe.1G054700_v2.0.a1
pyrus_communis	pycom16g19470
rosa_chinensis	RchiOBHm_Chr4g0396341
rosa_laevigata	RLG00000009549
rosa_multiflora	Rmu_ssc0000234.1_g000016
rosa_roxburghii	Rroxscaffold_5G00341160 Rroxscaffold_7G00160200
rosa_rugosa	Rorug03G0349900 Rorug03G0350000 Rorug03G0350100 Rorug03G0350200 Rorug03G0350300
rosa_samantha	Rh1CG210400 Rh2BG187800 Rh3BG188400 Rh4BG066500 Rh4CG073300 Rh4DG063400 Rh5BG463000 Rh5CG484900 Rh6AG475600 Rh6BG312700 Rh6CG021900 Rh6DG022000 Rh7DG258100
rosa_wichuraiana	Rw4G005470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1059, 1455
AasI	GACNNNNNNGTC	1 cut(s)	1907
AatII	GACGTC	1 cut(s)	119
Acc65I	GGTACC	1 cut(s)	473
AccB1I	GGYRCC	1 cut(s)	473
AccB7I	CCANNNNNTGG	2 cut(s)	1531, 2203
AccI	GTMKAC	2 cut(s)	1880, 1926
AccII	CGCG	1 cut(s)	34
AciI	CCGC	4 cut(s)	34, 501, 629, 1511
AclI	AACGTT	2 cut(s)	1502, 1597
AclWI	GGATC	2 cut(s)	842, 1159
AcsI	RAATTY	3 cut(s)	545, 1370, 1432
AcuI	CTGAAG	4 cut(s)	165, 261, 1638, 1763
AcvI	CACGTG	1 cut(s)	1403
AcyI	GRCGYC	1 cut(s)	116
AdeI	CACNNNGTG	1 cut(s)	2248
AfaI	GTAC	9 cut(s)	183, 211, 475, 640, 781, 832, 984, 1858, 2260
AfiI	CCNNNNNNNGG	7 cut(s)	73, 230, 298, 1244, 1531, 1973, 2203
AgsI	TTSAA	9 cut(s)	315, 339, 461, 551, 773, 1085, 1274, 1352, 2128
AhlI	ACTAGT	3 cut(s)	1010, 2050, 2351
AjnI	CCWGG	5 cut(s)	129, 403, 1146, 1494, 1929
AjuI	GAANNNNNNNTTGG	2 cut(s)	453, 485
Alw21I	GWGCWC	4 cut(s)	922, 1145, 1390, 1777
Alw26I	GTCTC	7 cut(s)	145, 199, 397, 1442, 1999, 2099, 2154
Alw44I	GTGCAC	1 cut(s)	918
AlwI	GGATC	2 cut(s)	842, 1159
Ama87I	CYCGRG	1 cut(s)	1391
AoxI	GGCC	7 cut(s)	221, 407, 705, 733, 1262, 1521, 2333
ApaI	GGGCCC	1 cut(s)	411
ApaLI	GTGCAC	1 cut(s)	918
ApeKI	GCWGC	4 cut(s)	95, 1331, 1586, 1963
ApoI	RAATTY	3 cut(s)	545, 1370, 1432
Asp718I	GGTACC	1 cut(s)	473
AspLEI	GCGC	1 cut(s)	66
AspS9I	GGNCC	9 cut(s)	221, 407, 408, 497, 734, 1187, 1252, 1522, 2333
AsuC2I	CCSGG	2 cut(s)	1072, 2328
AsuHPI	GGTGA	2 cut(s)	281, 857
AvaI	CYCGRG	1 cut(s)	1391
AvaII	GGWCC	3 cut(s)	497, 1187, 1252
AxyI	CCTNAGG	2 cut(s)	478, 1098
BaeGI	GKGCMC	2 cut(s)	411, 922
BanI	GGYRCC	1 cut(s)	473
BanII	GRGCYC	2 cut(s)	411, 1145
BarI	GAAGNNNNNNTAC	2 cut(s)	2070, 2102
BauI	CACGAG	1 cut(s)	1295
BbrPI	CACGTG	1 cut(s)	1403
BbsI	GAAGAC	2 cut(s)	119, 1218
Bbv12I	GWGCWC	4 cut(s)	922, 1145, 1390, 1777
BbvI	GCAGC	4 cut(s)	107, 1343, 1598, 1950
BccI	CCATC	8 cut(s)	194, 212, 519, 1039, 1178, 1180, 2301, 2344
BciT130I	CCWGG	5 cut(s)	131, 405, 1148, 1496, 1931
BclI	TGATCA	1 cut(s)	2017
BcnI	CCSGG	2 cut(s)	1072, 2328
BcoDI	GTCTC	7 cut(s)	145, 199, 397, 1442, 1999, 2099, 2154
BcuI	ACTAGT	3 cut(s)	1010, 2050, 2351
BfmI	CTRYAG	5 cut(s)	171, 363, 834, 1887, 1923
BfoI	RGCGCY	1 cut(s)	67
BglII	AGATCT	2 cut(s)	1022, 1894
BisI	GCNGC	4 cut(s)	96, 1332, 1587, 1964
BlpI	GCTNAGC	1 cut(s)	1092
BlsI	GCNGC	4 cut(s)	97, 1333, 1588, 1965
BmcAI	AGTACT	2 cut(s)	1858, 2260
Bme1390I	CCNGG	7 cut(s)	131, 405, 1072, 1148, 1496, 1931, 2328
Bme18I	GGWCC	3 cut(s)	497, 1187, 1252
BmeT110I	CYCGRG	1 cut(s)	1391
BmgT120I	GGNCC	9 cut(s)	221, 407, 408, 497, 734, 1187, 1252, 1522, 2333
BmiI	GGNNCC	3 cut(s)	409, 475, 499
BmrFI	CCNGG	7 cut(s)	131, 405, 1072, 1148, 1496, 1931, 2328
BmsI	GCATC	5 cut(s)	949, 1933, 1950, 2013, 2108
BoxI	GACNNNNGTC	1 cut(s)	1654
BpiI	GAAGAC	2 cut(s)	119, 1218
BpmI	CTGGAG	3 cut(s)	92, 1694, 1933
Bpu10I	CCTNAGC	1 cut(s)	12
Bpu1102I	GCTNAGC	1 cut(s)	1092
BpuEI	CTTGAG	3 cut(s)	786, 1559, 2180
BpuMI	CCSGG	2 cut(s)	1072, 2328
BsaAI	YACGTR	1 cut(s)	1403
BsaHI	GRCGYC	1 cut(s)	116
BsaJI	CCNNGG	3 cut(s)	404, 1146, 1147
BsaXI	ACNNNNNCTCC	2 cut(s)	1012, 1042
Bsc4I	CCNNNNNNNGG	7 cut(s)	73, 230, 298, 1244, 1531, 1973, 2203
Bse118I	RCCGGY	2 cut(s)	66, 707
Bse1I	ACTGG	3 cut(s)	783, 949, 1950
Bse21I	CCTNAGG	2 cut(s)	478, 1098
Bse3DI	GCAATG	1 cut(s)	2113
BseBI	CCWGG	5 cut(s)	131, 405, 1148, 1496, 1931
BseDI	CCNNGG	3 cut(s)	404, 1146, 1147
BseGI	GGATG	4 cut(s)	450, 511, 2287, 2312
BseLI	CCNNNNNNNGG	7 cut(s)	73, 230, 298, 1244, 1531, 1973, 2203
BseMI	GCAATG	1 cut(s)	2113
BseNI	ACTGG	3 cut(s)	783, 949, 1950
BseRI	GAGGAG	5 cut(s)	89, 660, 1115, 1649, 1919
BseSI	GKGCMC	2 cut(s)	411, 922
BseXI	GCAGC	4 cut(s)	107, 1343, 1598, 1950
BseYI	CCCAGC	3 cut(s)	1244, 1524, 1569
Bsh1236I	CGCG	1 cut(s)	34
BshFI	GGCC	7 cut(s)	223, 409, 707, 735, 1264, 1523, 2335
BshNI	GGYRCC	1 cut(s)	473
BsiHKAI	GWGCWC	4 cut(s)	922, 1145, 1390, 1777
BsiHKCI	CYCGRG	1 cut(s)	1391
BsiSI	CCGG	5 cut(s)	67, 708, 1071, 1967, 2328
BslFI	GGGAC	1 cut(s)	1899
BslI	CCNNNNNNNGG	7 cut(s)	73, 230, 298, 1244, 1531, 1973, 2203
BsmAI	GTCTC	7 cut(s)	145, 199, 397, 1442, 1999, 2099, 2154
BsmFI	GGGAC	1 cut(s)	1899
BsmI	GAATGC	1 cut(s)	1213
BsnI	GGCC	7 cut(s)	223, 409, 707, 735, 1264, 1523, 2335
BsoBI	CYCGRG	1 cut(s)	1391
Bsp120I	GGGCCC	1 cut(s)	407
Bsp1286I	GDGCHC	5 cut(s)	411, 922, 1145, 1390, 1777
Bsp1407I	TGTACA	1 cut(s)	982
Bsp143I	GATC	7 cut(s)	367, 847, 1022, 1151, 1515, 1894, 2017
Bsp1720I	GCTNAGC	1 cut(s)	1092
BspACI	CCGC	4 cut(s)	34, 501, 629, 1511
BspANI	GGCC	7 cut(s)	223, 409, 707, 735, 1264, 1523, 2335
BspFNI	CGCG	1 cut(s)	34
BspLI	GGNNCC	3 cut(s)	409, 475, 499
BspMAI	CTGCAG	1 cut(s)	838
BspPI	GGATC	2 cut(s)	842, 1159
BspQI	GCTCTTC	1 cut(s)	1782
BspT107I	GGYRCC	1 cut(s)	473
BsrDI	GCAATG	1 cut(s)	2113
BsrFI	RCCGGY	2 cut(s)	66, 707
BsrGI	TGTACA	1 cut(s)	982
BsrI	ACTGG	3 cut(s)	783, 949, 1950
BssAI	RCCGGY	2 cut(s)	66, 707
BssECI	CCNNGG	3 cut(s)	404, 1146, 1147
BssMI	GATC	7 cut(s)	367, 847, 1022, 1151, 1515, 1894, 2017
BssNAI	GTATAC	1 cut(s)	1881
BssNI	GRCGYC	1 cut(s)	116
BssSI	CACGAG	1 cut(s)	1295
Bst1107I	GTATAC	1 cut(s)	1881
Bst2BI	CACGAG	1 cut(s)	1295
Bst2UI	CCWGG	5 cut(s)	131, 405, 1148, 1496, 1931
Bst4CI	ACNGT	9 cut(s)	181, 193, 269, 329, 1121, 1748, 1924, 1980, 2258
Bst6I	CTCTTC	3 cut(s)	1714, 1782, 2073
BstACI	GRCGYC	1 cut(s)	116
BstAPI	GCANNNNNTGC	2 cut(s)	1807, 2248
BstAUI	TGTACA	1 cut(s)	982
BstBAI	YACGTR	1 cut(s)	1403
BstC8I	GCNNGC	3 cut(s)	68, 821, 911
BstF5I	GGATG	4 cut(s)	450, 511, 2287, 2312
BstFNI	CGCG	1 cut(s)	34
BstH2I	RGCGCY	1 cut(s)	67
BstHHI	GCGC	1 cut(s)	66
BstKTI	GATC	7 cut(s)	370, 850, 1025, 1154, 1518, 1897, 2020
BstMAI	GTCTC	7 cut(s)	145, 199, 397, 1442, 1999, 2099, 2154
BstMBI	GATC	7 cut(s)	367, 847, 1022, 1151, 1515, 1894, 2017
BstMWI	GCNNNNNNNGC	9 cut(s)	104, 561, 570, 910, 1394, 1403, 1678, 1807, 2248
BstNI	CCWGG	5 cut(s)	131, 405, 1148, 1496, 1931
BstNSI	RCATGY	2 cut(s)	308, 823
BstPAI	GACNNNNGTC	1 cut(s)	1654
BstSCI	CCNGG	7 cut(s)	129, 403, 1070, 1146, 1494, 1929, 2326
BstSFI	CTRYAG	5 cut(s)	171, 363, 834, 1887, 1923
BstSLI	GKGCMC	2 cut(s)	411, 922
BstUI	CGCG	1 cut(s)	34
BstV1I	GCAGC	4 cut(s)	107, 1343, 1598, 1950
BstV2I	GAAGAC	2 cut(s)	119, 1218
BstX2I	RGATCY	2 cut(s)	1022, 1894
BstXI	CCANNNNNNTGG	1 cut(s)	1609
BstYI	RGATCY	2 cut(s)	1022, 1894
BstZ17I	GTATAC	1 cut(s)	1881
Bsu36I	CCTNAGG	2 cut(s)	478, 1098
BsuRI	GGCC	7 cut(s)	223, 409, 707, 735, 1264, 1523, 2335
BtsCI	GGATG	4 cut(s)	450, 511, 2287, 2312
BtsI	GCAGTG	1 cut(s)	1154
BtsIMutI	CAGTG	6 cut(s)	237, 790, 942, 1154, 1777, 1920
Cac8I	GCNNGC	3 cut(s)	68, 821, 911
CfoI	GCGC	1 cut(s)	66
Cfr10I	RCCGGY	2 cut(s)	66, 707
Cfr13I	GGNCC	9 cut(s)	221, 407, 408, 497, 734, 1187, 1252, 1522, 2333
CseI	GACGC	1 cut(s)	40
Csp6I	GTAC	9 cut(s)	182, 210, 474, 639, 780, 831, 983, 1857, 2259
CspCI	CAANNNNNGTGG	2 cut(s)	931, 966
CviAII	CATG	4 cut(s)	305, 820, 980, 1138
CviQI	GTAC	9 cut(s)	182, 210, 474, 639, 780, 831, 983, 1857, 2259
DpnI	GATC	7 cut(s)	369, 849, 1024, 1153, 1517, 1896, 2019
DpnII	GATC	7 cut(s)	367, 847, 1022, 1151, 1515, 1894, 2017
DraIII	CACNNNGTG	1 cut(s)	2248
DrdI	GACNNNNNNGTC	1 cut(s)	1907
DseDI	GACNNNNNNGTC	1 cut(s)	1907
Eam1104I	CTCTTC	3 cut(s)	1714, 1782, 2073
EarI	CTCTTC	3 cut(s)	1714, 1782, 2073
Ecl136II	GAGCTC	1 cut(s)	1143
Eco24I	GRGCYC	2 cut(s)	411, 1145
Eco47I	GGWCC	3 cut(s)	497, 1187, 1252
Eco53kI	GAGCTC	1 cut(s)	1143
Eco57I	CTGAAG	4 cut(s)	165, 261, 1638, 1763
Eco72I	CACGTG	1 cut(s)	1403
Eco81I	CCTNAGG	2 cut(s)	478, 1098
Eco88I	CYCGRG	1 cut(s)	1391
EcoICRI	GAGCTC	1 cut(s)	1143
EcoO109I	RGGNCCY	1 cut(s)	408
EcoRII	CCWGG	5 cut(s)	129, 403, 1146, 1494, 1929
EcoT22I	ATGCAT	1 cut(s)	358
EcoT38I	GRGCYC	2 cut(s)	411, 1145
FaeI	CATG	4 cut(s)	308, 823, 983, 1141
FaqI	GGGAC	1 cut(s)	1899
FatI	CATG	4 cut(s)	304, 819, 979, 1137
FauI	CCCGC	2 cut(s)	508, 622
FauNDI	CATATG	2 cut(s)	493, 2266
FbaI	TGATCA	1 cut(s)	2017
FblI	GTMKAC	2 cut(s)	1880, 1926
Fnu4HI	GCNGC	4 cut(s)	96, 1332, 1587, 1964
FokI	GGATG	4 cut(s)	457, 498, 2294, 2319
FriOI	GRGCYC	2 cut(s)	411, 1145
Fsp4HI	GCNGC	4 cut(s)	96, 1332, 1587, 1964
GlaI	GCGC	1 cut(s)	65
GluI	GCNGC	4 cut(s)	96, 1332, 1587, 1964
GsaI	CCCAGC	3 cut(s)	1248, 1528, 1573
GsuI	CTGGAG	3 cut(s)	92, 1694, 1933
HaeII	RGCGCY	1 cut(s)	67
HaeIII	GGCC	7 cut(s)	223, 409, 707, 735, 1264, 1523, 2335
HapII	CCGG	5 cut(s)	67, 708, 1071, 1967, 2328
HgaI	GACGC	1 cut(s)	40
HhaI	GCGC	1 cut(s)	66
Hin1I	GRCGYC	1 cut(s)	116
Hin1II	CATG	4 cut(s)	308, 823, 983, 1141
Hin6I	GCGC	1 cut(s)	64
HinP1I	GCGC	1 cut(s)	64
HincII	GTYRAC	2 cut(s)	1477, 1764
HindII	GTYRAC	2 cut(s)	1477, 1764
HindIII	AAGCTT	3 cut(s)	243, 1818, 2357
HpaII	CCGG	5 cut(s)	67, 708, 1071, 1967, 2328
HphI	GGTGA	2 cut(s)	281, 857
Hpy166II	GTNNAC	8 cut(s)	530, 920, 1180, 1252, 1477, 1764, 1881, 1927
Hpy8I	GTNNAC	8 cut(s)	530, 920, 1180, 1252, 1477, 1764, 1881, 1927
Hpy99I	CGWCG	1 cut(s)	34
HpyAV	CCTTC	5 cut(s)	750, 866, 1633, 2122, 2270
HpyCH4III	ACNGT	9 cut(s)	181, 193, 269, 329, 1121, 1748, 1924, 1980, 2258
HpyCH4IV	ACGT	5 cut(s)	116, 526, 1402, 1502, 1597
HpyF10VI	GCNNNNNNNGC	9 cut(s)	104, 561, 570, 910, 1394, 1403, 1678, 1807, 2248
HpySE526I	ACGT	5 cut(s)	116, 526, 1402, 1502, 1597
Hsp92I	GRCGYC	1 cut(s)	116
Hsp92II	CATG	4 cut(s)	308, 823, 983, 1141
HspAI	GCGC	1 cut(s)	64
KpnI	GGTACC	1 cut(s)	477
KroI	GCCGGC	1 cut(s)	66
KroNI	GCCGGC	1 cut(s)	68
Ksp22I	TGATCA	1 cut(s)	2017
Kzo9I	GATC	7 cut(s)	367, 847, 1022, 1151, 1515, 1894, 2017
LguI	GCTCTTC	1 cut(s)	1782
LmnI	GCTCC	3 cut(s)	203, 1148, 2123
Lsp1109I	GCAGC	4 cut(s)	107, 1343, 1598, 1950
LweI	GCATC	5 cut(s)	949, 1933, 1950, 2013, 2108
MaeII	ACGT	5 cut(s)	116, 526, 1402, 1502, 1597
MaeIII	GTNAC	5 cut(s)	187, 269, 853, 997, 1503
MalI	GATC	7 cut(s)	369, 849, 1024, 1153, 1517, 1896, 2019
MboI	GATC	7 cut(s)	367, 847, 1022, 1151, 1515, 1894, 2017
MfeI	CAATTG	2 cut(s)	1682, 2031
MflI	RGATCY	2 cut(s)	1022, 1894
MhlI	GDGCHC	5 cut(s)	411, 922, 1145, 1390, 1777
MluCI	AATT	8 cut(s)	25, 545, 1370, 1432, 1481, 1682, 2031, 2144
MlyI	GAGTC	4 cut(s)	1001, 1084, 1112, 1424
MmeI	TCCRAC	2 cut(s)	790, 1140
Mph1103I	ATGCAT	1 cut(s)	358
MroNI	GCCGGC	1 cut(s)	66
MseI	TTAA	2 cut(s)	1050, 1484
MspA1I	CMGCKG	2 cut(s)	1528, 1589
MspI	CCGG	5 cut(s)	67, 708, 1071, 1967, 2328
MspR9I	CCNGG	7 cut(s)	131, 405, 1072, 1148, 1496, 1931, 2328
MunI	CAATTG	2 cut(s)	1682, 2031
Mva1269I	GAATGC	1 cut(s)	1213
MvaI	CCWGG	5 cut(s)	131, 405, 1148, 1496, 1931
MvnI	CGCG	1 cut(s)	34
MwoI	GCNNNNNNNGC	9 cut(s)	104, 561, 570, 910, 1394, 1403, 1678, 1807, 2248
NaeI	GCCGGC	1 cut(s)	68
NciI	CCSGG	2 cut(s)	1072, 2328
NdeI	CATATG	2 cut(s)	493, 2266
NdeII	GATC	7 cut(s)	367, 847, 1022, 1151, 1515, 1894, 2017
NgoMIV	GCCGGC	1 cut(s)	66
NlaIII	CATG	4 cut(s)	308, 823, 983, 1141
NlaIV	GGNNCC	3 cut(s)	409, 475, 499
NmuCI	GTSAC	1 cut(s)	269
NsiI	ATGCAT	1 cut(s)	358
NspI	RCATGY	2 cut(s)	308, 823
PaeI	GCATGC	1 cut(s)	823
PaeR7I	CTCGAG	1 cut(s)	1391
PasI	CCCWGGG	1 cut(s)	1147
PciSI	GCTCTTC	1 cut(s)	1782
PctI	GAATGC	1 cut(s)	1213
PdiI	GCCGGC	1 cut(s)	68
PfeI	GAWTC	6 cut(s)	347, 583, 617, 769, 938, 1043
PflMI	CCANNNNNTGG	2 cut(s)	1531, 2203
PfoI	TCCNGGA	2 cut(s)	1070, 2326
PkrI	GCNGC	4 cut(s)	97, 1333, 1588, 1965
PleI	GAGTC	4 cut(s)	1000, 1083, 1111, 1423
PmaCI	CACGTG	1 cut(s)	1403
PmlI	CACGTG	1 cut(s)	1403
PpsI	GAGTC	4 cut(s)	1000, 1083, 1111, 1423
Ppu21I	YACGTR	1 cut(s)	1403
PshAI	GACNNNNGTC	1 cut(s)	1654
PsiI	TTATAA	2 cut(s)	1059, 1455
Psp124BI	GAGCTC	1 cut(s)	1145
Psp1406I	AACGTT	2 cut(s)	1502, 1597
Psp6I	CCWGG	5 cut(s)	129, 403, 1146, 1494, 1929
PspCI	CACGTG	1 cut(s)	1403
PspFI	CCCAGC	3 cut(s)	1244, 1524, 1569
PspGI	CCWGG	5 cut(s)	129, 403, 1146, 1494, 1929
PspN4I	GGNNCC	3 cut(s)	409, 475, 499
PspOMI	GGGCCC	1 cut(s)	407
PspPI	GGNCC	9 cut(s)	221, 407, 408, 497, 734, 1187, 1252, 1522, 2333
PspXI	VCTCGAGB	1 cut(s)	1391
PstI	CTGCAG	1 cut(s)	838
PsuI	RGATCY	2 cut(s)	1022, 1894
PvuII	CAGCTG	2 cut(s)	1528, 1589
RsaI	GTAC	9 cut(s)	183, 211, 475, 640, 781, 832, 984, 1858, 2260
RsaNI	GTAC	9 cut(s)	182, 210, 474, 639, 780, 831, 983, 1857, 2259
SacI	GAGCTC	1 cut(s)	1145
SapI	GCTCTTC	1 cut(s)	1782
SaqAI	TTAA	2 cut(s)	1050, 1484
SatI	GCNGC	4 cut(s)	96, 1332, 1587, 1964
Sau3AI	GATC	7 cut(s)	367, 847, 1022, 1151, 1515, 1894, 2017
Sau96I	GGNCC	9 cut(s)	221, 407, 408, 497, 734, 1187, 1252, 1522, 2333
ScaI	AGTACT	2 cut(s)	1858, 2260
SchI	GAGTC	4 cut(s)	1001, 1084, 1112, 1424
ScrFI	CCNGG	7 cut(s)	131, 405, 1072, 1148, 1496, 1931, 2328
SduI	GDGCHC	5 cut(s)	411, 922, 1145, 1390, 1777
SfaNI	GCATC	5 cut(s)	949, 1933, 1950, 2013, 2108
SfcI	CTRYAG	5 cut(s)	171, 363, 834, 1887, 1923
Sfr274I	CTCGAG	1 cut(s)	1391
SinI	GGWCC	3 cut(s)	497, 1187, 1252
SlaI	CTCGAG	1 cut(s)	1391
SmlI	CTYRAG	4 cut(s)	801, 1391, 1538, 2159
SmoI	CTYRAG	4 cut(s)	801, 1391, 1538, 2159
SpeI	ACTAGT	3 cut(s)	1010, 2050, 2351
SphI	GCATGC	1 cut(s)	823
Sse9I	AATT	8 cut(s)	25, 545, 1370, 1432, 1481, 1682, 2031, 2144
SsiI	CCGC	4 cut(s)	34, 501, 629, 1511
SstI	GAGCTC	1 cut(s)	1145
StyD4I	CCNGG	7 cut(s)	129, 403, 1070, 1146, 1494, 1929, 2326
TaaI	ACNGT	9 cut(s)	181, 193, 269, 329, 1121, 1748, 1924, 1980, 2258
TaiI	ACGT	5 cut(s)	119, 529, 1405, 1505, 1600
TaqI	TCGA	4 cut(s)	29, 260, 611, 1392
TasI	AATT	8 cut(s)	25, 545, 1370, 1432, 1481, 1682, 2031, 2144
TatI	WGTACW	3 cut(s)	982, 1856, 2258
TfiI	GAWTC	6 cut(s)	347, 583, 617, 769, 938, 1043
Tru1I	TTAA	2 cut(s)	1050, 1484
Tru9I	TTAA	2 cut(s)	1050, 1484
TscAI	CASTG	6 cut(s)	244, 790, 949, 1161, 1777, 1927
TseFI	GTSAC	1 cut(s)	269
TseI	GCWGC	4 cut(s)	95, 1331, 1586, 1963
Tsp45I	GTSAC	1 cut(s)	269
TspGWI	ACGGA	3 cut(s)	71, 610, 1828
TspRI	CASTG	6 cut(s)	244, 790, 949, 1161, 1777, 1927
Van91I	CCANNNNNTGG	2 cut(s)	1531, 2203
VneI	GTGCAC	1 cut(s)	918
VpaK11BI	GGWCC	3 cut(s)	497, 1187, 1252
XapI	RAATTY	3 cut(s)	545, 1370, 1432
XbaI	TCTAGA	1 cut(s)	1897
XceI	RCATGY	2 cut(s)	308, 823
XhoI	CTCGAG	1 cut(s)	1391
XmiI	GTMKAC	2 cut(s)	1880, 1926
ZraI	GACGTC	1 cut(s)	117
ZrmI	AGTACT	2 cut(s)	1858, 2260
Zsp2I	ATGCAT	1 cut(s)	358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.