Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0003761

Physical Location & Seq

Genomic Coordinates Reverse (-)

9663538 .. 9675368

Gene Structure 11831 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00341160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2730 bp

ATGGCTTCGGCTCAGGTGTTGCCCAATTCGACGCGGAAACAAGAACATTTGGAAGCTGGAAAGCGCCGGATGCATTCTTTGAGCTGGAGGAGTTCCGTAAAGAAAAAAGCAGCAGAAAGAGCTAAGAAGACGTCATCTTCTAGCCAGGTCAATATCTCTGAAGTTAGCTCAAATGAGAAACAACCTATAGAAACTGTACGGGTTACAGTCTCAGATGGAGCTGGTACATCTGATGGGCCTATTGGTGGTTTCACTGAAGCTTCTTCTGTAATATCGAGCAACGGTGACAACGCCATTGATTTTTCCCACCAAAAGGAACATGCTTCTTCAAATAATACACACAGTAGTTCTTCAACAAATGATTCTAATGCATTTTCTGTAGATCAAGAATATAAGAGATTTGGTGTCTCAGGTTTTTCTGGACCCTCAGATGTTGGTTATAGCTATGATATAAAAGGGATGAATAATGATGTTGAAAAAGATACTGGTACCTTAGGTGTTTTACCATATGGACCCACTTCTAACCATCCTATTGCTCTACGTACACAAGCAAGTCAAGAATTTGAAAGCAACACAAGCCAATCCAGCTTTTATGGGATTCAGTCCTCAGAACATAAACTGTCTTTGAGGGATTCCGTAGGTGCAGGTTTGGGTACTTCTCAACAATTTGTTGCGAAAATCGCACCTCAGAACTCTGTCAGCACATTTCCACAAAGTGAGGCCAGTAATTTCAGCACAATGGCTGGTGGCCCTGCTTCATCATCTTCGCTTTATCAAGATTCTGACTGGATTTATGTTATGAGATTCATATCAGACTTGATTCAACCTAGTACCAGTGCAAGAGGGTCTGCTCAAGAAGTTGGGAAAAGCATGCGTGGTGGTACTGCAGACTTTGGTGATCCTGTAACTTTCAGATTTGGAGAAGGAAAACTAAGTAGTTCTGCAAGTGGTATGCCTAGCTTGCAGAGTGCACAAGTGCAAACAACTGAATCCAGTGGTTTTGGATATGATGGTAGAAGTTCGTCCAATCATGTACAGCTAGAGTCAGTTACACCTGATACTAGTTCTAGGAGATCTCGTCCATCATTCCTTGATTCTCTTAATGTTCATAAGGCTTCTTCCGGGAGTCCTTTTCAACAAGCTGAGCCTGAGGAGTCATATTTCTCCAACAGTTCTAAATCAAGTGGCATGAGCTTCCTGGGGTCGCTGCCTTTCCATAAGCCATCTATGGACGATGGACCGGTTGCACCTCATTCATTTGAGCATTCCAATAAGTCTTCATTTTCTCCTAGTGCTGGGGTGGACCAGCAGAGGCCAATAGTTGAAAGTAGCTTCGACAGAAAACACGAGTTCTATTCATCTAAGCAAAATGATGATTTTGCAGCTTTGGAACAGCACATTGAAGATTTGACACAAGAAAAGTTTTCTTTGCAACGAGCACTCGAGGCTTCACGTGCTTTAGCTGAGTCATTGGCTTCTGAAAATTCTTCTTTGACAGAGACTTATAACCAACAGAGAAGCGTTGTTGACCAACTAAATTCTGACCTGGAAACGTTACAAGCGGAGATCAAGGCCCAGCTGGTGGAACTTGAGGCTGTCAGAAATGAATATGCAAATGCCCATCTAGAATGTAATGCAGCCGATGAACGTTCCAAGTTATTGGCTGCTGAAGTTATTAGTTTAGAGGAGAAGGCACTCAGACTAAGGTCAAGTGAGCTAAAGCTGGAGAGGCAATTGGAGAACTCACAAGCCGAAATCTCTTCATACAAAGGATGTGATCCTGTGTGCAAGGTTTTAAGTATCTCCCAGTCAATGGAAATTTTTGTAGTTTCACCTTATCAAATTTTGAGTGATATCTGGAATATTTATGAAACTCGCTTAAAAAGATTGTCTAGCCTAGAAAAAGACCGTTCAGATTTGCAGTCAACTATCAGTGCTCTTCAGGAAGAGAAGAAGCTATTGCAGTCTATGCTACGGAAGGCTTCCACTAACGAAAGGAAAGCTGATGTTAGCAAGAGTACTACTAACAAGAAGGATGTGTTTACTTCTACAGAAGATCTAGCAGATGAGGAGGTCGGTCCCGACACCATAGACCAGGAAATGCGTGATGCATCCAGTTTCCCCATGCTCCCTGAACATGGACAGTCAAGTTTTGATGTCTCGTCTGTAAATATACCTCCTGATCAGATGCAAACAATTGAGAACATCAATACACTAGTTTCTGAGTTAGCATTAGAGAAAGAAGAGTTGATACAATCTTTGGCATCTGAGACATCACATTGCTCCAAGTTGAAGTATACAATCATTGAAAAGGAAGTGGCTGAAATATGGGTTATGACTTACGAAGTACTGTTGCCAAAAGAGGCACATGTACTATCTGACTGTGAAGTGTGGACTTGCATAGGGACCGTGCACATGTACTATCTCATGCTCAAGATACTAGATACTTATGCCAATAGCATTCCATGCATTTTGAAACTGAGGATGTTTGTAGAACTGAATAATGATTTGTCCCGGAAACTTGAAGCTCAAACTCAGAGATTAGAGCTTTTGACTGCCCAAAGTATGGCTAATGGGAGTGTTCCAATCAGGCAACCTATTTCGCACGATGTGCCTGACAGTACTCCATATGCAGATGAAGGGGATGAGGTGGTGGAAAGGGTCTTGGGATGGATTATGAAACTTTTTCCCGGAGGGCCATCAAGACGAAGAACTAGTAAGCTTCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010026 GO:0010090 GO:0010091 GO:0010154 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048468 GO:0048518 GO:0048522 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051302 GO:0051781 GO:0060255 GO:0061458 GO:0065007 GO:0071840 GO:0080090 GO:0090558 GO:0090567 GO:0090626 GO:0090698 GO:0099402 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

909

Amino Acids

99.91

Weight (kDa)

5.13

Isoelectric Point (pI)

57.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003761)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23980
fragaria_vesca	FvH4_4g05311 FvH4_4g05311 FvH4_4g05311 FvH4_4g05311
malus_domestica	MD13G1227500.v1.1 MD16G1232700.v1.1
prunus_persica	Prupe.1G054700_v2.0.a1 Prupe.1G054700_v2.0.a1
pyrus_communis	pycom16g19470
rosa_chinensis	RchiOBHm_Chr4g0396341
rosa_laevigata	RLG00000009549
rosa_multiflora	Rmu_ssc0000234.1_g000016
rosa_roxburghii	Rroxscaffold_5G00341160 Rroxscaffold_7G00160200
rosa_rugosa	Rorug03G0349900 Rorug03G0350000 Rorug03G0350100 Rorug03G0350200 Rorug03G0350300
rosa_samantha	Rh1CG210400 Rh2BG187800 Rh3BG188400 Rh4BG066500 Rh4CG073300 Rh4DG063400 Rh5BG463000 Rh5CG484900 Rh6AG475600 Rh6BG312700 Rh6CG021900 Rh6DG022000 Rh7DG258100
rosa_wichuraiana	Rw4G005470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1506
AatII	GACGTC	1 cut(s)	134
Acc36I	ACCTGC	1 cut(s)	635
Acc65I	GGTACC	1 cut(s)	488
AccB1I	GGYRCC	1 cut(s)	488
AccB7I	CCANNNNNTGG	3 cut(s)	1582, 1813, 2566
AccI	GTMKAC	1 cut(s)	2297
AccII	CGCG	1 cut(s)	34
AciI	CCGC	2 cut(s)	34, 1562
AclI	AACGTT	2 cut(s)	1553, 1648
AclWI	GGATC	2 cut(s)	893, 1772
AcsI	RAATTY	5 cut(s)	560, 1483, 1537, 1818, 1842
AcuI	CTGAAG	4 cut(s)	180, 276, 1689, 1925
AcvI	CACGTG	1 cut(s)	1454
AcyI	GRCGYC	1 cut(s)	131
AdeI	CACNNNGTG	2 cut(s)	716, 2611
AfiI	CCNNNNNNNGG	7 cut(s)	245, 313, 1295, 1582, 1813, 2138, 2566
AflIII	ACRYGT	2 cut(s)	2368, 2415
AgeI	ACCGGT	1 cut(s)	1240
AhlI	ACTAGT	3 cut(s)	1061, 2215, 2714
AjnI	CCWGG	4 cut(s)	144, 1197, 1545, 2094
Alw21I	GWGCWC	4 cut(s)	973, 1441, 1939, 2415
Alw26I	GTCTC	5 cut(s)	214, 412, 1493, 2164, 2264
Alw44I	GTGCAC	2 cut(s)	969, 2411
AlwI	GGATC	2 cut(s)	893, 1772
Ama87I	CYCGRG	1 cut(s)	1442
AoxI	GGCC	6 cut(s)	236, 720, 748, 1313, 1572, 2696
ApaLI	GTGCAC	2 cut(s)	969, 2411
ApeKI	GCWGC	5 cut(s)	110, 1207, 1382, 1637, 1664
ApoI	RAATTY	5 cut(s)	560, 1483, 1537, 1818, 1842
AsiGI	ACCGGT	1 cut(s)	1240
Asp718I	GGTACC	1 cut(s)	488
AspLEI	GCGC	1 cut(s)	66
AsuC2I	CCSGG	3 cut(s)	1123, 2515, 2691
AsuHPI	GGTGA	3 cut(s)	296, 908, 1824
AvaI	CYCGRG	1 cut(s)	1442
AvaII	GGWCC	6 cut(s)	422, 512, 1238, 1303, 2078, 2406
AxyI	CCTNAGG	2 cut(s)	493, 1149
BaeGI	GKGCMC	2 cut(s)	973, 2415
BanI	GGYRCC	1 cut(s)	488
BarI	GAAGNNNNNNTAC	2 cut(s)	2235, 2267
BauI	CACGAG	1 cut(s)	1346
BbrPI	CACGTG	1 cut(s)	1454
BbsI	GAAGAC	2 cut(s)	134, 1269
Bbv12I	GWGCWC	4 cut(s)	973, 1441, 1939, 2415
BbvI	GCAGC	5 cut(s)	122, 1194, 1394, 1649, 1651
BciT130I	CCWGG	4 cut(s)	146, 1199, 1547, 2096
BclI	TGATCA	1 cut(s)	2182
BcnI	CCSGG	3 cut(s)	1123, 2515, 2691
BcoDI	GTCTC	5 cut(s)	214, 412, 1493, 2164, 2264
BcuI	ACTAGT	3 cut(s)	1061, 2215, 2714
BfmI	CTRYAG	4 cut(s)	186, 378, 885, 2049
BfoI	RGCGCY	1 cut(s)	67
BfuAI	ACCTGC	1 cut(s)	635
BglII	AGATCT	2 cut(s)	1073, 2056
BisI	GCNGC	5 cut(s)	111, 1208, 1383, 1638, 1665
BlpI	GCTNAGC	1 cut(s)	1143
BlsI	GCNGC	5 cut(s)	112, 1209, 1384, 1639, 1666
BmcAI	AGTACT	3 cut(s)	2020, 2349, 2623
Bme1390I	CCNGG	7 cut(s)	146, 1123, 1199, 1547, 2096, 2515, 2691
Bme18I	GGWCC	6 cut(s)	422, 512, 1238, 1303, 2078, 2406
BmeT110I	CYCGRG	1 cut(s)	1442
BmiI	GGNNCC	5 cut(s)	424, 490, 514, 2080, 2407
BmrFI	CCNGG	7 cut(s)	146, 1123, 1199, 1547, 2096, 2515, 2691
BmrI	ACTGGG	1 cut(s)	1801
BmsI	GCATC	5 cut(s)	60, 2098, 2120, 2178, 2273
BmuI	ACTGGG	1 cut(s)	1801
BoxI	GACNNNNGTC	1 cut(s)	1705
BpiI	GAAGAC	2 cut(s)	134, 1269
BpmI	CTGGAG	2 cut(s)	106, 1745
Bpu10I	CCTNAGC	1 cut(s)	12
Bpu1102I	GCTNAGC	1 cut(s)	1143
BpuEI	CTTGAG	3 cut(s)	837, 1610, 2417
BpuMI	CCSGG	3 cut(s)	1123, 2515, 2691
BsaAI	YACGTR	2 cut(s)	542, 1454
BsaBI	GATNNNNATC	1 cut(s)	808
BsaHI	GRCGYC	1 cut(s)	131
BsaJI	CCNNGG	1 cut(s)	1198
BsaWI	WCCGGW	1 cut(s)	1240
BsaXI	ACNNNNNCTCC	2 cut(s)	1063, 1093
Bsc4I	CCNNNNNNNGG	7 cut(s)	245, 313, 1295, 1582, 1813, 2138, 2566
Bse118I	RCCGGY	1 cut(s)	1240
Bse1I	ACTGG	7 cut(s)	490, 723, 791, 834, 993, 1807, 2115
Bse21I	CCTNAGG	2 cut(s)	493, 1149
Bse3DI	GCAATG	1 cut(s)	2278
Bse8I	GATNNNNATC	1 cut(s)	808
BseBI	CCWGG	4 cut(s)	146, 1199, 1547, 2096
BseDI	CCNNGG	1 cut(s)	1198
BseGI	GGATG	9 cut(s)	75, 465, 526, 1778, 2041, 2111, 2490, 2650, 2675
BseJI	GATNNNNATC	1 cut(s)	808
BseLI	CCNNNNNNNGG	7 cut(s)	245, 313, 1295, 1582, 1813, 2138, 2566
BseMI	GCAATG	1 cut(s)	2278
BseNI	ACTGG	7 cut(s)	490, 723, 791, 834, 993, 1807, 2115
BseRI	GAGGAG	4 cut(s)	103, 1166, 1700, 2084
BseSI	GKGCMC	2 cut(s)	973, 2415
BseXI	GCAGC	5 cut(s)	122, 1194, 1394, 1649, 1651
BseYI	CCCAGC	2 cut(s)	1295, 1575
BsgI	GTGCAG	1 cut(s)	663
Bsh1236I	CGCG	1 cut(s)	34
BshFI	GGCC	6 cut(s)	238, 722, 750, 1315, 1574, 2698
BshNI	GGYRCC	1 cut(s)	488
BshTI	ACCGGT	1 cut(s)	1240
BsiHKAI	GWGCWC	4 cut(s)	973, 1441, 1939, 2415
BsiHKCI	CYCGRG	1 cut(s)	1442
BsiSI	CCGG	5 cut(s)	67, 1122, 1241, 2515, 2691
BslFI	GGGAC	3 cut(s)	2064, 2419, 2497
BslI	CCNNNNNNNGG	7 cut(s)	245, 313, 1295, 1582, 1813, 2138, 2566
BsmAI	GTCTC	5 cut(s)	214, 412, 1493, 2164, 2264
BsmFI	GGGAC	3 cut(s)	2064, 2419, 2497
BsmI	GAATGC	3 cut(s)	73, 1264, 2460
BsnI	GGCC	6 cut(s)	238, 722, 750, 1315, 1574, 2698
BsoBI	CYCGRG	1 cut(s)	1442
Bsp1286I	GDGCHC	4 cut(s)	973, 1441, 1939, 2415
Bsp1407I	TGTACA	1 cut(s)	1033
Bsp143I	GATC	7 cut(s)	382, 898, 1073, 1566, 1777, 2056, 2182
Bsp1720I	GCTNAGC	1 cut(s)	1143
BspACI	CCGC	2 cut(s)	34, 1562
BspANI	GGCC	6 cut(s)	238, 722, 750, 1315, 1574, 2698
BspFNI	CGCG	1 cut(s)	34
BspLI	GGNNCC	5 cut(s)	424, 490, 514, 2080, 2407
BspMAI	CTGCAG	1 cut(s)	889
BspMI	ACCTGC	1 cut(s)	635
BspPI	GGATC	2 cut(s)	893, 1772
BspQI	GCTCTTC	1 cut(s)	1944
BspT107I	GGYRCC	1 cut(s)	488
BsrDI	GCAATG	1 cut(s)	2278
BsrFI	RCCGGY	1 cut(s)	1240
BsrGI	TGTACA	1 cut(s)	1033
BsrI	ACTGG	7 cut(s)	490, 723, 791, 834, 993, 1807, 2115
BssAI	RCCGGY	1 cut(s)	1240
BssECI	CCNNGG	1 cut(s)	1198
BssMI	GATC	7 cut(s)	382, 898, 1073, 1566, 1777, 2056, 2182
BssNAI	GTATAC	1 cut(s)	2298
BssNI	GRCGYC	1 cut(s)	131
BssSI	CACGAG	1 cut(s)	1346
Bst1107I	GTATAC	1 cut(s)	2298
Bst2BI	CACGAG	1 cut(s)	1346
Bst2UI	CCWGG	4 cut(s)	146, 1199, 1547, 2096
Bst6I	CTCTTC	4 cut(s)	1765, 1941, 1944, 2238
BstACI	GRCGYC	1 cut(s)	131
BstAPI	GCANNNNNTGC	3 cut(s)	1969, 2466, 2611
BstAUI	TGTACA	1 cut(s)	1033
BstBAI	YACGTR	2 cut(s)	542, 1454
BstC8I	GCNNGC	2 cut(s)	872, 962
BstF5I	GGATG	9 cut(s)	75, 465, 526, 1778, 2041, 2111, 2490, 2650, 2675
BstFNI	CGCG	1 cut(s)	34
BstH2I	RGCGCY	1 cut(s)	67
BstHHI	GCGC	1 cut(s)	66
BstKTI	GATC	7 cut(s)	385, 901, 1076, 1569, 1780, 2059, 2185
BstMAI	GTCTC	5 cut(s)	214, 412, 1493, 2164, 2264
BstMBI	GATC	7 cut(s)	382, 898, 1073, 1566, 1777, 2056, 2182
BstNI	CCWGG	4 cut(s)	146, 1199, 1547, 2096
BstNSI	RCATGY	4 cut(s)	323, 874, 2372, 2419
BstPAI	GACNNNNGTC	1 cut(s)	1705
BstSCI	CCNGG	7 cut(s)	144, 1121, 1197, 1545, 2094, 2513, 2689
BstSFI	CTRYAG	4 cut(s)	186, 378, 885, 2049
BstSLI	GKGCMC	2 cut(s)	973, 2415
BstSNI	TACGTA	1 cut(s)	542
BstUI	CGCG	1 cut(s)	34
BstV1I	GCAGC	5 cut(s)	122, 1194, 1394, 1649, 1651
BstV2I	GAAGAC	2 cut(s)	134, 1269
BstX2I	RGATCY	2 cut(s)	1073, 2056
BstXI	CCANNNNNNTGG	1 cut(s)	1660
BstYI	RGATCY	2 cut(s)	1073, 2056
BstZ17I	GTATAC	1 cut(s)	2298
Bsu36I	CCTNAGG	2 cut(s)	493, 1149
BsuRI	GGCC	6 cut(s)	238, 722, 750, 1315, 1574, 2698
BtsCI	GGATG	9 cut(s)	75, 465, 526, 1778, 2041, 2111, 2490, 2650, 2675
BtsIMutI	CAGTG	4 cut(s)	252, 841, 1000, 1939
BveI	ACCTGC	1 cut(s)	635
Cac8I	GCNNGC	2 cut(s)	872, 962
CfoI	GCGC	1 cut(s)	66
Cfr10I	RCCGGY	1 cut(s)	1240
CseI	GACGC	1 cut(s)	40
CspAI	ACCGGT	1 cut(s)	1240
DpnI	GATC	7 cut(s)	384, 900, 1075, 1568, 1779, 2058, 2184
DpnII	GATC	7 cut(s)	382, 898, 1073, 1566, 1777, 2056, 2182
DraIII	CACNNNGTG	2 cut(s)	716, 2611
Eam1104I	CTCTTC	4 cut(s)	1765, 1941, 1944, 2238
EarI	CTCTTC	4 cut(s)	1765, 1941, 1944, 2238
Eco105I	TACGTA	1 cut(s)	542
Eco32I	GATATC	1 cut(s)	1855
Eco47I	GGWCC	6 cut(s)	422, 512, 1238, 1303, 2078, 2406
Eco57I	CTGAAG	4 cut(s)	180, 276, 1689, 1925
Eco72I	CACGTG	1 cut(s)	1454
Eco81I	CCTNAGG	2 cut(s)	493, 1149
Eco88I	CYCGRG	1 cut(s)	1442
EcoRII	CCWGG	4 cut(s)	144, 1197, 1545, 2094
EcoRV	GATATC	1 cut(s)	1855
EcoT22I	ATGCAT	4 cut(s)	75, 373, 2113, 2471
FaqI	GGGAC	3 cut(s)	2064, 2419, 2497
FauNDI	CATATG	2 cut(s)	508, 2629
FbaI	TGATCA	1 cut(s)	2182
FblI	GTMKAC	1 cut(s)	2297
Fnu4HI	GCNGC	5 cut(s)	111, 1208, 1383, 1638, 1665
FokI	GGATG	9 cut(s)	82, 472, 513, 1785, 2048, 2098, 2497, 2657, 2682
Fsp4HI	GCNGC	5 cut(s)	111, 1208, 1383, 1638, 1665
GlaI	GCGC	1 cut(s)	65
GluI	GCNGC	5 cut(s)	111, 1208, 1383, 1638, 1665
GsaI	CCCAGC	2 cut(s)	1299, 1579
GsuI	CTGGAG	2 cut(s)	106, 1745
HaeII	RGCGCY	1 cut(s)	67
HaeIII	GGCC	6 cut(s)	238, 722, 750, 1315, 1574, 2698
HapII	CCGG	5 cut(s)	67, 1122, 1241, 2515, 2691
HgaI	GACGC	1 cut(s)	40
HhaI	GCGC	1 cut(s)	66
Hin1I	GRCGYC	1 cut(s)	131
Hin6I	GCGC	1 cut(s)	64
HinP1I	GCGC	1 cut(s)	64
HincII	GTYRAC	2 cut(s)	1528, 1926
HindII	GTYRAC	2 cut(s)	1528, 1926
HindIII	AAGCTT	2 cut(s)	258, 2720
HpaII	CCGG	5 cut(s)	67, 1122, 1241, 2515, 2691
HphI	GGTGA	3 cut(s)	296, 908, 1824
Hpy166II	GTNNAC	9 cut(s)	545, 971, 1303, 1528, 1926, 2043, 2298, 2394, 2413
Hpy8I	GTNNAC	9 cut(s)	545, 971, 1303, 1528, 1926, 2043, 2298, 2394, 2413
Hpy99I	CGWCG	1 cut(s)	34
HpyAV	CCTTC	5 cut(s)	917, 1684, 1972, 2026, 2633
HpyCH4IV	ACGT	5 cut(s)	131, 541, 1453, 1553, 1648
HpySE526I	ACGT	5 cut(s)	131, 541, 1453, 1553, 1648
Hsp92I	GRCGYC	1 cut(s)	131
HspAI	GCGC	1 cut(s)	64
KpnI	GGTACC	1 cut(s)	492
Ksp22I	TGATCA	1 cut(s)	2182
Kzo9I	GATC	7 cut(s)	382, 898, 1073, 1566, 1777, 2056, 2182
LguI	GCTCTTC	1 cut(s)	1944
LmnI	GCTCC	3 cut(s)	218, 2133, 2288
Lsp1109I	GCAGC	5 cut(s)	122, 1194, 1394, 1649, 1651
LweI	GCATC	5 cut(s)	60, 2098, 2120, 2178, 2273
MaeII	ACGT	5 cut(s)	131, 541, 1453, 1553, 1648
MaeIII	GTNAC	5 cut(s)	202, 284, 904, 1048, 1554
MalI	GATC	7 cut(s)	384, 900, 1075, 1568, 1779, 2058, 2184
MboI	GATC	7 cut(s)	382, 898, 1073, 1566, 1777, 2056, 2182
MfeI	CAATTG	2 cut(s)	1733, 2196
MflI	RGATCY	2 cut(s)	1073, 2056
MhlI	GDGCHC	4 cut(s)	973, 1441, 1939, 2415
MlyI	GAGTC	4 cut(s)	1052, 1135, 1163, 1475
MmeI	TCCRAC	1 cut(s)	1191
Mph1103I	ATGCAT	4 cut(s)	75, 373, 2113, 2471
MseI	TTAA	3 cut(s)	1101, 1796, 1880
MspA1I	CMGCKG	1 cut(s)	1579
MspI	CCGG	5 cut(s)	67, 1122, 1241, 2515, 2691
MspR9I	CCNGG	7 cut(s)	146, 1123, 1199, 1547, 2096, 2515, 2691
MunI	CAATTG	2 cut(s)	1733, 2196
Mva1269I	GAATGC	3 cut(s)	73, 1264, 2460
MvaI	CCWGG	4 cut(s)	146, 1199, 1547, 2096
MvnI	CGCG	1 cut(s)	34
NciI	CCSGG	3 cut(s)	1123, 2515, 2691
NdeI	CATATG	2 cut(s)	508, 2629
NdeII	GATC	7 cut(s)	382, 898, 1073, 1566, 1777, 2056, 2182
NlaIV	GGNNCC	5 cut(s)	424, 490, 514, 2080, 2407
NmuCI	GTSAC	1 cut(s)	284
NsiI	ATGCAT	4 cut(s)	75, 373, 2113, 2471
NspI	RCATGY	4 cut(s)	323, 874, 2372, 2419
PaeI	GCATGC	1 cut(s)	874
PaeR7I	CTCGAG	1 cut(s)	1442
PciI	ACATGT	2 cut(s)	2368, 2415
PciSI	GCTCTTC	1 cut(s)	1944
PctI	GAATGC	3 cut(s)	73, 1264, 2460
PfeI	GAWTC	8 cut(s)	362, 598, 632, 779, 804, 820, 989, 1094
PflMI	CCANNNNNTGG	3 cut(s)	1582, 1813, 2566
PfoI	TCCNGGA	3 cut(s)	1121, 2513, 2689
PinAI	ACCGGT	1 cut(s)	1240
PkrI	GCNGC	5 cut(s)	112, 1209, 1384, 1639, 1666
PleI	GAGTC	4 cut(s)	1051, 1134, 1162, 1474
PmaCI	CACGTG	1 cut(s)	1454
PmlI	CACGTG	1 cut(s)	1454
PpsI	GAGTC	4 cut(s)	1051, 1134, 1162, 1474
Ppu21I	YACGTR	2 cut(s)	542, 1454
PscI	ACATGT	2 cut(s)	2368, 2415
PshAI	GACNNNNGTC	1 cut(s)	1705
PsiI	TTATAA	1 cut(s)	1506
Psp1406I	AACGTT	2 cut(s)	1553, 1648
Psp6I	CCWGG	4 cut(s)	144, 1197, 1545, 2094
PspCI	CACGTG	1 cut(s)	1454
PspFI	CCCAGC	2 cut(s)	1295, 1575
PspGI	CCWGG	4 cut(s)	144, 1197, 1545, 2094
PspN4I	GGNNCC	5 cut(s)	424, 490, 514, 2080, 2407
PspXI	VCTCGAGB	1 cut(s)	1442
PstI	CTGCAG	1 cut(s)	889
PsuI	RGATCY	2 cut(s)	1073, 2056
PvuII	CAGCTG	1 cut(s)	1579
SapI	GCTCTTC	1 cut(s)	1944
SaqAI	TTAA	3 cut(s)	1101, 1796, 1880
SatI	GCNGC	5 cut(s)	111, 1208, 1383, 1638, 1665
Sau3AI	GATC	7 cut(s)	382, 898, 1073, 1566, 1777, 2056, 2182
ScaI	AGTACT	3 cut(s)	2020, 2349, 2623
SchI	GAGTC	4 cut(s)	1052, 1135, 1163, 1475
ScrFI	CCNGG	7 cut(s)	146, 1123, 1199, 1547, 2096, 2515, 2691
SduI	GDGCHC	4 cut(s)	973, 1441, 1939, 2415
SfaNI	GCATC	5 cut(s)	60, 2098, 2120, 2178, 2273
SfcI	CTRYAG	4 cut(s)	186, 378, 885, 2049
Sfr274I	CTCGAG	1 cut(s)	1442
SinI	GGWCC	6 cut(s)	422, 512, 1238, 1303, 2078, 2406
SlaI	CTCGAG	1 cut(s)	1442
SmlI	CTYRAG	4 cut(s)	852, 1442, 1589, 2432
SmoI	CTYRAG	4 cut(s)	852, 1442, 1589, 2432
SnaBI	TACGTA	1 cut(s)	542
SpeI	ACTAGT	3 cut(s)	1061, 2215, 2714
SphI	GCATGC	1 cut(s)	874
SsiI	CCGC	2 cut(s)	34, 1562
SspI	AATATT	1 cut(s)	1864
StyD4I	CCNGG	7 cut(s)	144, 1121, 1197, 1545, 2094, 2513, 2689
TaiI	ACGT	5 cut(s)	134, 544, 1456, 1556, 1651
TaqI	TCGA	4 cut(s)	29, 275, 1335, 1443
TaqII	GACCGA	1 cut(s)	2066
TatI	WGTACW	6 cut(s)	1033, 2018, 2347, 2371, 2418, 2621
TfiI	GAWTC	8 cut(s)	362, 598, 632, 779, 804, 820, 989, 1094
Tru1I	TTAA	3 cut(s)	1101, 1796, 1880
Tru9I	TTAA	3 cut(s)	1101, 1796, 1880
TscAI	CASTG	4 cut(s)	259, 841, 1000, 1939
TseFI	GTSAC	1 cut(s)	284
TseI	GCWGC	5 cut(s)	110, 1207, 1382, 1637, 1664
Tsp45I	GTSAC	1 cut(s)	284
TspGWI	ACGGA	3 cut(s)	85, 625, 1990
TspRI	CASTG	4 cut(s)	259, 841, 1000, 1939
Van91I	CCANNNNNTGG	3 cut(s)	1582, 1813, 2566
VneI	GTGCAC	2 cut(s)	969, 2411
VpaK11BI	GGWCC	6 cut(s)	422, 512, 1238, 1303, 2078, 2406
XapI	RAATTY	5 cut(s)	560, 1483, 1537, 1818, 1842
XbaI	TCTAGA	1 cut(s)	1624
XceI	RCATGY	4 cut(s)	323, 874, 2372, 2419
XhoI	CTCGAG	1 cut(s)	1442
XmiI	GTMKAC	1 cut(s)	2297
ZraI	GACGTC	1 cut(s)	132
ZrmI	AGTACT	3 cut(s)	2020, 2349, 2623
Zsp2I	ATGCAT	4 cut(s)	75, 373, 2113, 2471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.