Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0003761

Physical Location & Seq

Genomic Coordinates Reverse (-)

42731351 .. 42732740

Gene Structure 1390 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0350000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGTATGGGGGTGAAGAAGGTTTCTCTTTGTTTTTGCATTTGGGAGAAAGCAAGTCCAATTTTGATCTTGAAAAAGTAGTATGCAACCATGGTTTCTTCATGATGGCTCCAAACCGTTGGATTTCGTCTTCAAAAACCCTACAACGTCCCTTGAGACTCGCAGACTCAACCAAGTCAGTGATGGTTTCCATCTTAAAGCCATGTGTTTCTATTCATAAGAACTCTCTCATAGTTCGACTCCACAAAGTTAGTCCAAGCGACATATCAAAAAAAGATGAGGTTGCTATACTAGAACAAGTGCGTCGAATGCTTAGGATTTCCCATAAAGATGAAGAAAATGTAAAAGAGTATCATACAAAGCTCTTCCAGCTCAAGGACAAGGACAACGACGACCATTACAAAGTCGGTTCTGGTAGAATGTTTCGTTCTCCTTCTCTCTTTGAAGACCTTGTCAAATGCCTTCTGTTATGTAACTGCAAGTGGTCGAATTCATTGAAAATGGCTCAAGCTCTTTGTGAGCTTCAATTTGAGCCAAGCAGCAATGCTTCGATGAGATCAAACGGACAAAAGAGGCAGAGAGAAGAATTAAAGATTGATCGAAGTGATAGTGATGGTAAAGAAAAATTAGGTAATTTTCCAAGCTCACGGGAACTTGCTAGATTGGATGGGAAGACTTTAAAAAAGCTTACCAATAATATTCTTGGCTACCGGGCAAAATACATTCTAAGTCTTGCTAAAGGTGTGGAGAGTGGAAAGATAAGACTTGCTGAATTTGAAGGGCTTGAGGAGAAAGATGATGTGTTTCAGAAATTCATGCAAATAAAAGGTTTTGGTTCCTTTGCATGCGCCAATGCTATGATGTGCATTGGATATTATCACAAAGTTCCAGTAGATACTGAAACTATAAGGCATTTGCAGCAGGTTCATGGGAGGAAAAATTGCAACAAAAATACTGTCATGGAAGATGTGGAAGAAATCTATAAGAAGTATGCCCCATTTCAGTGCTTGGCATATTGGTCGGAGCTCTTGGACTCGTATGAATGCAAATTTGGGAAGCTTAGTGAATTACCGGACTCTGCCTATCATACAATAAGTGGGAGGCTTGAAACTTTTGACACCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010026 GO:0010090 GO:0010091 GO:0010154 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048468 GO:0048518 GO:0048522 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051302 GO:0051781 GO:0060255 GO:0061458 GO:0065007 GO:0071840 GO:0080090 GO:0090558 GO:0090567 GO:0090626 GO:0090698 GO:0099402 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

374

Amino Acids

42.92

Weight (kDa)

8.78

Isoelectric Point (pI)

47.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003761)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23980
fragaria_vesca	FvH4_4g05311 FvH4_4g05311 FvH4_4g05311 FvH4_4g05311
malus_domestica	MD13G1227500.v1.1 MD16G1232700.v1.1
prunus_persica	Prupe.1G054700_v2.0.a1 Prupe.1G054700_v2.0.a1
pyrus_communis	pycom16g19470
rosa_chinensis	RchiOBHm_Chr4g0396341
rosa_laevigata	RLG00000009549
rosa_multiflora	Rmu_ssc0000234.1_g000016
rosa_roxburghii	Rroxscaffold_5G00341160 Rroxscaffold_7G00160200
rosa_rugosa	Rorug03G0349900 Rorug03G0350000 Rorug03G0350100 Rorug03G0350200 Rorug03G0350300
rosa_samantha	Rh1CG210400 Rh2BG187800 Rh3BG188400 Rh4BG066500 Rh4CG073300 Rh4DG063400 Rh5BG463000 Rh5CG484900 Rh6AG475600 Rh6BG312700 Rh6CG021900 Rh6DG022000 Rh7DG258100
rosa_wichuraiana	Rw4G005470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	910
AcsI	RAATTY	4 cut(s)	487, 770, 809, 1046
AfiI	CCNNNNNNNGG	1 cut(s)	373
AgsI	TTSAA	7 cut(s)	71, 132, 443, 496, 524, 776, 1106
AjuI	GAANNNNNNNTTGG	2 cut(s)	1032, 1064
AluBI	AGCT	8 cut(s)	361, 370, 509, 520, 642, 685, 1024, 1057
AluI	AGCT	8 cut(s)	361, 370, 509, 520, 642, 685, 1024, 1057
Alw21I	GWGCWC	1 cut(s)	1026
Alw26I	GTCTC	1 cut(s)	148
ApeKI	GCWGC	2 cut(s)	537, 916
ApoI	RAATTY	4 cut(s)	487, 770, 809, 1046
ArsI	GACNNNNNNTTYG	2 cut(s)	939, 971
AspLEI	GCGC	1 cut(s)	848
AsuC2I	CCSGG	1 cut(s)	710
AsuHPI	GGTGA	1 cut(s)	23
BanII	GRGCYC	1 cut(s)	1026
BbsI	GAAGAC	3 cut(s)	120, 450, 677
Bbv12I	GWGCWC	1 cut(s)	1026
BbvI	GCAGC	2 cut(s)	549, 928
BccI	CCATC	5 cut(s)	97, 175, 197, 605, 659
BcgI	CGANNNNNNTGC	2 cut(s)	999, 1033
BcnI	CCSGG	1 cut(s)	710
BcoDI	GTCTC	1 cut(s)	148
BfaI	CTAG	2 cut(s)	290, 657
BfuAI	ACCTGC	1 cut(s)	910
BisI	GCNGC	2 cut(s)	538, 917
BlsI	GCNGC	2 cut(s)	539, 918
Bme1390I	CCNGG	1 cut(s)	710
BmiI	GGNNCC	2 cut(s)	108, 835
BmrFI	CCNGG	1 cut(s)	710
BpiI	GAAGAC	3 cut(s)	120, 450, 677
Bpu10I	CCTNAGC	1 cut(s)	311
BpuEI	CTTGAG	4 cut(s)	172, 356, 489, 803
BpuMI	CCSGG	1 cut(s)	710
BsaJI	CCNNGG	1 cut(s)	88
BsaWI	WCCGGW	1 cut(s)	1069
Bsc4I	CCNNNNNNNGG	1 cut(s)	373
Bse1I	ACTGG	1 cut(s)	887
Bse3DI	GCAATG	1 cut(s)	547
BseDI	CCNNGG	1 cut(s)	88
BseGI	GGATG	1 cut(s)	670
BseLI	CCNNNNNNNGG	1 cut(s)	373
BseMI	GCAATG	1 cut(s)	547
BseNI	ACTGG	1 cut(s)	887
BseRI	GAGGAG	1 cut(s)	800
BseXI	GCAGC	2 cut(s)	549, 928
BsiHKAI	GWGCWC	1 cut(s)	1026
BsiSI	CCGG	2 cut(s)	709, 1070
BslFI	GGGAC	1 cut(s)	132
BslI	CCNNNNNNNGG	1 cut(s)	373
BsmAI	GTCTC	1 cut(s)	148
BsmFI	GGGAC	1 cut(s)	132
BsmI	GAATGC	2 cut(s)	312, 1046
Bsp1286I	GDGCHC	1 cut(s)	1026
Bsp143I	GATC	3 cut(s)	64, 554, 595
Bsp19I	CCATGG	1 cut(s)	88
BspHI	TCATGA	1 cut(s)	99
BspLI	GGNNCC	2 cut(s)	108, 835
BspMI	ACCTGC	1 cut(s)	910
BspQI	GCTCTTC	1 cut(s)	368
BsrDI	GCAATG	1 cut(s)	547
BsrI	ACTGG	1 cut(s)	887
BssECI	CCNNGG	1 cut(s)	88
BssMI	GATC	3 cut(s)	64, 554, 595
BssT1I	CCWWGG	1 cut(s)	88
Bst4CI	ACNGT	2 cut(s)	116, 955
Bst6I	CTCTTC	1 cut(s)	368
BstC8I	GCNNGC	1 cut(s)	844
BstDEI	CTNAG	3 cut(s)	311, 725, 1058
BstDSI	CCRYGG	1 cut(s)	88
BstF5I	GGATG	1 cut(s)	670
BstHHI	GCGC	1 cut(s)	848
BstKTI	GATC	3 cut(s)	67, 557, 598
BstMAI	GTCTC	1 cut(s)	148
BstMBI	GATC	3 cut(s)	64, 554, 595
BstMWI	GCNNNNNNNGC	3 cut(s)	307, 367, 916
BstNSI	RCATGY	1 cut(s)	846
BstSCI	CCNGG	1 cut(s)	708
BstV1I	GCAGC	2 cut(s)	549, 928
BstV2I	GAAGAC	3 cut(s)	120, 450, 677
BstXI	CCANNNNNNTGG	1 cut(s)	117
BtgI	CCRYGG	1 cut(s)	88
BtsCI	GGATG	1 cut(s)	670
BtsIMutI	CAGTG	2 cut(s)	183, 1007
BveI	ACCTGC	1 cut(s)	910
Cac8I	GCNNGC	1 cut(s)	844
CciI	TCATGA	1 cut(s)	99
CfoI	GCGC	1 cut(s)	848
CseI	GACGC	1 cut(s)	290
CviAII	CATG	7 cut(s)	89, 100, 201, 814, 843, 926, 958
DdeI	CTNAG	3 cut(s)	311, 725, 1058
DpnI	GATC	3 cut(s)	66, 556, 597
DpnII	GATC	3 cut(s)	64, 554, 595
DraI	TTTAAA	1 cut(s)	678
Eam1104I	CTCTTC	1 cut(s)	368
EarI	CTCTTC	1 cut(s)	368
Ecl136II	GAGCTC	1 cut(s)	1024
Eco130I	CCWWGG	1 cut(s)	88
Eco24I	GRGCYC	1 cut(s)	1026
Eco53kI	GAGCTC	1 cut(s)	1024
EcoICRI	GAGCTC	1 cut(s)	1024
EcoRI	GAATTC	1 cut(s)	487
EcoT14I	CCWWGG	1 cut(s)	88
EcoT38I	GRGCYC	1 cut(s)	1026
ErhI	CCWWGG	1 cut(s)	88
FaeI	CATG	7 cut(s)	92, 103, 204, 817, 846, 929, 961
FaqI	GGGAC	1 cut(s)	132
FatI	CATG	7 cut(s)	88, 99, 200, 813, 842, 925, 957
Fnu4HI	GCNGC	2 cut(s)	538, 917
FokI	GGATG	1 cut(s)	677
FriOI	GRGCYC	1 cut(s)	1026
Fsp4HI	GCNGC	2 cut(s)	538, 917
FspBI	CTAG	2 cut(s)	290, 657
GlaI	GCGC	1 cut(s)	847
GluI	GCNGC	2 cut(s)	538, 917
HapII	CCGG	2 cut(s)	709, 1070
HgaI	GACGC	1 cut(s)	290
HhaI	GCGC	1 cut(s)	848
Hin1II	CATG	7 cut(s)	92, 103, 204, 817, 846, 929, 961
Hin6I	GCGC	1 cut(s)	846
HinP1I	GCGC	1 cut(s)	846
HindIII	AAGCTT	2 cut(s)	683, 1055
HinfI	GANTC	5 cut(s)	156, 164, 237, 1031, 1073
HpaII	CCGG	2 cut(s)	709, 1070
HphI	GGTGA	1 cut(s)	23
Hpy188I	TCNGA	2 cut(s)	807, 1021
Hpy188III	TCNNGA	2 cut(s)	68, 100
Hpy99I	CGWCG	2 cut(s)	306, 392
HpyAV	CCTTC	4 cut(s)	11, 441, 470, 770
HpyCH4III	ACNGT	2 cut(s)	116, 955
HpyCH4IV	ACGT	1 cut(s)	145
HpyCH4V	TGCA	9 cut(s)	37, 84, 477, 817, 842, 864, 916, 942, 1044
HpyF10VI	GCNNNNNNNGC	3 cut(s)	307, 367, 916
HpyF3I	CTNAG	3 cut(s)	311, 725, 1058
HpySE526I	ACGT	1 cut(s)	145
Hsp92II	CATG	7 cut(s)	92, 103, 204, 817, 846, 929, 961
HspAI	GCGC	1 cut(s)	846
Kzo9I	GATC	3 cut(s)	64, 554, 595
LguI	GCTCTTC	1 cut(s)	368
LmnI	GCTCC	2 cut(s)	112, 1021
LpnPI	CCDG	6 cut(s)	380, 396, 722, 900, 905, 1083
Lsp1109I	GCAGC	2 cut(s)	549, 928
MaeI	CTAG	2 cut(s)	290, 657
MaeII	ACGT	1 cut(s)	145
MaeIII	GTNAC	1 cut(s)	470
MalI	GATC	3 cut(s)	66, 556, 597
MboI	GATC	3 cut(s)	64, 554, 595
MhlI	GDGCHC	1 cut(s)	1026
MlyI	GAGTC	5 cut(s)	150, 158, 231, 1025, 1067
MmeI	TCCRAC	2 cut(s)	98, 999
MnlI	CCTC	5 cut(s)	271, 564, 778, 924, 1092
MseI	TTAA	3 cut(s)	194, 587, 677
MslI	CAYNNNNRTG	2 cut(s)	327, 1000
MspI	CCGG	2 cut(s)	709, 1070
MspR9I	CCNGG	1 cut(s)	710
Mva1269I	GAATGC	2 cut(s)	312, 1046
MwoI	GCNNNNNNNGC	3 cut(s)	307, 367, 916
NciI	CCSGG	1 cut(s)	710
NcoI	CCATGG	1 cut(s)	88
NdeII	GATC	3 cut(s)	64, 554, 595
NlaIII	CATG	7 cut(s)	92, 103, 204, 817, 846, 929, 961
NlaIV	GGNNCC	2 cut(s)	108, 835
NspI	RCATGY	1 cut(s)	846
PaeI	GCATGC	1 cut(s)	846
PagI	TCATGA	1 cut(s)	99
PciSI	GCTCTTC	1 cut(s)	368
PctI	GAATGC	2 cut(s)	312, 1046
PflFI	GACNNNGTC	1 cut(s)	449
PkrI	GCNGC	2 cut(s)	539, 918
PleI	GAGTC	5 cut(s)	150, 158, 231, 1025, 1067
PpsI	GAGTC	5 cut(s)	150, 158, 231, 1025, 1067
Psp124BI	GAGCTC	1 cut(s)	1026
PspN4I	GGNNCC	2 cut(s)	108, 835
PsyI	GACNNNGTC	1 cut(s)	449
RseI	CAYNNNNRTG	2 cut(s)	327, 1000
SacI	GAGCTC	1 cut(s)	1026
SapI	GCTCTTC	1 cut(s)	368
SaqAI	TTAA	3 cut(s)	194, 587, 677
SatI	GCNGC	2 cut(s)	538, 917
Sau3AI	GATC	3 cut(s)	64, 554, 595
SchI	GAGTC	5 cut(s)	150, 158, 231, 1025, 1067
ScrFI	CCNGG	1 cut(s)	710
SduI	GDGCHC	1 cut(s)	1026
SmiMI	CAYNNNNRTG	2 cut(s)	327, 1000
SmlI	CTYRAG	4 cut(s)	151, 371, 504, 782
SmoI	CTYRAG	4 cut(s)	151, 371, 504, 782
SphI	GCATGC	1 cut(s)	846
SspI	AATATT	1 cut(s)	697
SspMI	CTAG	2 cut(s)	290, 657
SstI	GAGCTC	1 cut(s)	1026
StyD4I	CCNGG	1 cut(s)	708
StyI	CCWWGG	1 cut(s)	88
TaaI	ACNGT	2 cut(s)	116, 955
TaiI	ACGT	1 cut(s)	148
TaqI	TCGA	5 cut(s)	235, 304, 485, 548, 598
Tru1I	TTAA	3 cut(s)	194, 587, 677
Tru9I	TTAA	3 cut(s)	194, 587, 677
TscAI	CASTG	2 cut(s)	183, 1007
TseI	GCWGC	2 cut(s)	537, 916
TspDTI	ATGAA	7 cut(s)	88, 203, 345, 480, 802, 914, 1053
TspGWI	ACGGA	1 cut(s)	576
TspRI	CASTG	2 cut(s)	183, 1007
Tth111I	GACNNNGTC	1 cut(s)	449
XapI	RAATTY	4 cut(s)	487, 770, 809, 1046
XceI	RCATGY	1 cut(s)	846
XcmI	CCANNNNNNNNNTGG	1 cut(s)	178
XspI	CTAG	2 cut(s)	290, 657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.