Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0003761

Physical Location & Seq

Genomic Coordinates Reverse (-)

42746247 .. 42747515

Gene Structure 1269 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0350100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1269 bp

ATGATAAGGGGTATATCTGGAGTACAAAAGAAGTGCGTCACAACTGGTGAGATGTCGGTTGGACCTGCTAAGGCACTATTCATGGATGAAATATCGACTGGTTTGGATAGTTCAACAACTTATCAGATAGTAAATTCAATCAAGCAATTTGTTCACATTCTCCATGGGACTGCTTTCATCTCATTGCTGCAGCCACCACCTGAGACTTATGATATATTTGATGACATTATTGTTCTTTCTGATGGTCAAATCGTGTACCAAGGTCCCCGTGAATATATTCTTGACTTTTTCAAATCCATGGGCTTCAGATGTCCCGAGAGAAAAGGTGTGGCCGATTTTCTGCAAGAAGTGACATCAAAGAAAGATCAGGAGCAGTATCGGGGAAGCAGAGATGAGCCTTACAAGTTCATCACAGTCGAAGAATTCTCTGAGCCATTCCAATCTTTTCATGTAGGGGGCACAATTACTAATGAACTTGCAACTCCATTTGACAAGACCAAGAGCCACCCAGCTACATTATCAACCAATATATATGGGGTTAAAAAAGCCAAACTGGTGAAAACTTGTCTCTTAAGGGAGTTCTTGCTGATGAAGAGGAACTCATTTGTTTACCTTTTCAAGCCTACCCAACAATCAATATTGGCTCTGATTACAATGACACTATTCCTAAGGACTAAGATGCACCATGACATAGTGATTAATGGAGGTCTTTATGCTGGTGCTTTGTTCTTCTCCTTGTATACTGTTGTGCTCAATGCAGTGGCAAAGATATCGATGACTGTAGCGAAGCTTCCAGTTTTTTATAAGCAAAGAAAGCTACTCTTGTTTCCACCATGGGCGTATGCACTTCCCACGTGGATCCTCAAGATCCCTCTCACTTGTGTTGAAGTTGGTGTTTGGGTATTTGTTTCCTATTATGTCATTGGATATGATCCAAATGTTGGAAGGTTGTTCAAACAATACCTTCTCCTCCTACTCATGCATCAAATGGTTAATGCATTATTCAAATCCATTGCTGGAACTAGTAGAAGCTGGACTATTGCTAATACACTTGTCTCATTCTCAACATGCGTATATGTGGCTTTGGGAGGCTTTATCCTGTCAAGAGGGAATATAAAGGAATGGTGGAAATGGGGCAACCGGATATCACCTTTGATGTATGGGCAGAATGCTATTATAATTAATGAGTTCCTTGGCAAGACAACTCTAATGGATCTCTTCAATGTAATTGGTTCTATGTATGCTACGCTTCTCCTTATCTTCAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010026 GO:0010090 GO:0010091 GO:0010154 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048468 GO:0048518 GO:0048522 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051302 GO:0051781 GO:0060255 GO:0061458 GO:0065007 GO:0071840 GO:0080090 GO:0090558 GO:0090567 GO:0090626 GO:0090698 GO:0099402 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

422

Amino Acids

47.83

Weight (kDa)

9.29

Isoelectric Point (pI)

33.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC2_membrane	PF01061	185 - 397	1e-42	ABC-2 type transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003761)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23980
fragaria_vesca	FvH4_4g05311 FvH4_4g05311 FvH4_4g05311 FvH4_4g05311
malus_domestica	MD13G1227500.v1.1 MD16G1232700.v1.1
prunus_persica	Prupe.1G054700_v2.0.a1 Prupe.1G054700_v2.0.a1
pyrus_communis	pycom16g19470
rosa_chinensis	RchiOBHm_Chr4g0396341
rosa_laevigata	RLG00000009549
rosa_multiflora	Rmu_ssc0000234.1_g000016
rosa_roxburghii	Rroxscaffold_5G00341160 Rroxscaffold_7G00160200
rosa_rugosa	Rorug03G0349900 Rorug03G0350000 Rorug03G0350100 Rorug03G0350200 Rorug03G0350300
rosa_samantha	Rh1CG210400 Rh2BG187800 Rh3BG188400 Rh4BG066500 Rh4CG073300 Rh4DG063400 Rh5BG463000 Rh5CG484900 Rh6AG475600 Rh6BG312700 Rh6CG021900 Rh6DG022000 Rh7DG258100
rosa_wichuraiana	Rw4G005470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	804, 1178
Acc36I	ACCTGC	1 cut(s)	73
AccB7I	CCANNNNNTGG	1 cut(s)	941
AccI	GTMKAC	1 cut(s)	740
AclWI	GGATC	5 cut(s)	853, 862, 866, 926, 1221
AcoI	YGGCCR	1 cut(s)	330
AcsI	RAATTY	2 cut(s)	133, 422
AcuI	CTGAAG	1 cut(s)	289
AcvI	CACGTG	1 cut(s)	855
AfaI	GTAC	2 cut(s)	24, 257
AfiI	CCNNNNNNNGG	1 cut(s)	941
AflII	CTTAAG	1 cut(s)	571
AgsI	TTSAA	9 cut(s)	114, 138, 292, 619, 887, 955, 1006, 1222, 1264
AhlI	ACTAGT	1 cut(s)	1022
AluBI	AGCT	4 cut(s)	512, 790, 817, 1032
AluI	AGCT	4 cut(s)	512, 790, 817, 1032
Alw21I	GWGCWC	1 cut(s)	753
Alw26I	GTCTC	3 cut(s)	197, 572, 1060
AlwI	GGATC	5 cut(s)	853, 862, 866, 926, 1221
Ama87I	CYCGRG	1 cut(s)	314
AoxI	GGCC	1 cut(s)	330
ApeKI	GCWGC	2 cut(s)	187, 190
ApoI	RAATTY	2 cut(s)	133, 422
AseI	ATTAAT	2 cut(s)	699, 1182
Asp700I	GAANNNNTTC	1 cut(s)	276
AspS9I	GGNCC	2 cut(s)	62, 263
AsuHPI	GGTGA	3 cut(s)	59, 568, 1140
AvaI	CYCGRG	1 cut(s)	314
AvaII	GGWCC	2 cut(s)	62, 263
AxyI	CCTNAGG	1 cut(s)	668
BaeGI	GKGCMC	1 cut(s)	461
BamHI	GGATCC	1 cut(s)	858
BarI	GAAGNNNNNNTAC	2 cut(s)	774, 806
BbrPI	CACGTG	1 cut(s)	855
Bbv12I	GWGCWC	1 cut(s)	753
BbvI	GCAGC	2 cut(s)	174, 202
BccI	CCATC	1 cut(s)	236
BcgI	CGANNNNNNTGC	2 cut(s)	753, 787
BcoDI	GTCTC	3 cut(s)	197, 572, 1060
BcuI	ACTAGT	1 cut(s)	1022
BfaI	CTAG	2 cut(s)	1023, 1267
BfmI	CTRYAG	2 cut(s)	188, 780
BfrI	CTTAAG	1 cut(s)	571
BfuAI	ACCTGC	1 cut(s)	73
BisI	GCNGC	2 cut(s)	188, 191
BlsI	GCNGC	2 cut(s)	189, 192
Bme18I	GGWCC	2 cut(s)	62, 263
BmeT110I	CYCGRG	1 cut(s)	314
BmgT120I	GGNCC	2 cut(s)	62, 263
BmiI	GGNNCC	2 cut(s)	265, 860
BmsI	GCATC	2 cut(s)	669, 991
BpmI	CTGGAG	1 cut(s)	39
Bpu10I	CCTNAGC	1 cut(s)	69
BpuEI	CTTGAG	1 cut(s)	848
Bsa29I	ATCGAT	1 cut(s)	773
BsaAI	YACGTR	1 cut(s)	855
BsaJI	CCNNGG	5 cut(s)	163, 259, 297, 833, 1192
BsaWI	WCCGGW	1 cut(s)	1140
Bsc4I	CCNNNNNNNGG	1 cut(s)	941
Bse1I	ACTGG	4 cut(s)	49, 103, 558, 794
Bse21I	CCTNAGG	1 cut(s)	668
Bse3DI	GCAATG	2 cut(s)	182, 1011
BseCI	ATCGAT	1 cut(s)	773
BseDI	CCNNGG	5 cut(s)	163, 259, 297, 833, 1192
BseGI	GGATG	1 cut(s)	91
BseLI	CCNNNNNNNGG	1 cut(s)	941
BseMI	GCAATG	2 cut(s)	182, 1011
BseMII	CTCAG	2 cut(s)	192, 420
BseNI	ACTGG	4 cut(s)	49, 103, 558, 794
BseRI	GAGGAG	1 cut(s)	959
BseSI	GKGCMC	1 cut(s)	461
BseXI	GCAGC	2 cut(s)	174, 202
BseYI	CCCAGC	1 cut(s)	508
BshFI	GGCC	1 cut(s)	332
BshVI	ATCGAT	1 cut(s)	773
BsiHKAI	GWGCWC	1 cut(s)	753
BsiHKCI	CYCGRG	1 cut(s)	314
BsiSI	CCGG	1 cut(s)	1141
BslFI	GGGAC	3 cut(s)	181, 249, 297
BslI	CCNNNNNNNGG	1 cut(s)	941
BsmAI	GTCTC	3 cut(s)	197, 572, 1060
BsmFI	GGGAC	3 cut(s)	181, 249, 297
BsmI	GAATGC	1 cut(s)	1174
BsnI	GGCC	1 cut(s)	332
BsoBI	CYCGRG	1 cut(s)	314
Bsp1286I	GDGCHC	2 cut(s)	461, 753
Bsp143I	GATC	5 cut(s)	364, 858, 867, 931, 1213
Bsp19I	CCATGG	3 cut(s)	163, 297, 833
BspANI	GGCC	1 cut(s)	332
BspCNI	CTCAG	2 cut(s)	193, 421
BspDI	ATCGAT	1 cut(s)	773
BspLI	GGNNCC	2 cut(s)	265, 860
BspMAI	CTGCAG	1 cut(s)	192
BspMI	ACCTGC	1 cut(s)	73
BspPI	GGATC	5 cut(s)	853, 862, 866, 926, 1221
BspTI	CTTAAG	1 cut(s)	571
BsrDI	GCAATG	2 cut(s)	182, 1011
BsrI	ACTGG	4 cut(s)	49, 103, 558, 794
BssECI	CCNNGG	5 cut(s)	163, 259, 297, 833, 1192
BssMI	GATC	5 cut(s)	364, 858, 867, 931, 1213
BssNAI	GTATAC	1 cut(s)	741
BssT1I	CCWWGG	5 cut(s)	163, 259, 297, 833, 1192
Bst1107I	GTATAC	1 cut(s)	741
Bst4CI	ACNGT	3 cut(s)	415, 745, 781
Bst6I	CTCTTC	2 cut(s)	587, 1223
BstAFI	CTTAAG	1 cut(s)	571
BstBAI	YACGTR	1 cut(s)	855
BstDEI	CTNAG	5 cut(s)	69, 201, 429, 668, 675
BstDSI	CCRYGG	3 cut(s)	163, 297, 833
BstF5I	GGATG	1 cut(s)	91
BstKTI	GATC	5 cut(s)	367, 861, 870, 934, 1216
BstMAI	GTCTC	3 cut(s)	197, 572, 1060
BstMBI	GATC	5 cut(s)	364, 858, 867, 931, 1213
BstMWI	GCNNNNNNNGC	1 cut(s)	814
BstNSI	RCATGY	1 cut(s)	1071
BstSFI	CTRYAG	2 cut(s)	188, 780
BstSLI	GKGCMC	1 cut(s)	461
BstV1I	GCAGC	2 cut(s)	174, 202
BstX2I	RGATCY	3 cut(s)	858, 867, 1213
BstYI	RGATCY	3 cut(s)	858, 867, 1213
BstZ17I	GTATAC	1 cut(s)	741
Bsu15I	ATCGAT	1 cut(s)	773
Bsu36I	CCTNAGG	1 cut(s)	668
BsuRI	GGCC	1 cut(s)	332
BsuTUI	ATCGAT	1 cut(s)	773
BtgI	CCRYGG	3 cut(s)	163, 297, 833
BtsCI	GGATG	1 cut(s)	91
BtsI	GCAGTG	1 cut(s)	765
BtsIMutI	CAGTG	1 cut(s)	765
BveI	ACCTGC	1 cut(s)	73
Cfr13I	GGNCC	2 cut(s)	62, 263
ClaI	ATCGAT	1 cut(s)	773
CseI	GACGC	1 cut(s)	25
Csp6I	GTAC	2 cut(s)	23, 256
CviAII	CATG	8 cut(s)	82, 164, 298, 449, 686, 834, 979, 1068
CviQI	GTAC	2 cut(s)	23, 256
DdeI	CTNAG	5 cut(s)	69, 201, 429, 668, 675
DpnI	GATC	5 cut(s)	366, 860, 869, 933, 1215
DpnII	GATC	5 cut(s)	364, 858, 867, 931, 1213
EaeI	YGGCCR	1 cut(s)	330
Eam1104I	CTCTTC	2 cut(s)	587, 1223
EarI	CTCTTC	2 cut(s)	587, 1223
Eco130I	CCWWGG	5 cut(s)	163, 259, 297, 833, 1192
Eco32I	GATATC	2 cut(s)	771, 1146
Eco47I	GGWCC	2 cut(s)	62, 263
Eco57I	CTGAAG	1 cut(s)	289
Eco72I	CACGTG	1 cut(s)	855
Eco81I	CCTNAGG	1 cut(s)	668
Eco88I	CYCGRG	1 cut(s)	314
EcoO109I	RGGNCCY	1 cut(s)	263
EcoRI	GAATTC	1 cut(s)	422
EcoRV	GATATC	2 cut(s)	771, 1146
EcoT14I	CCWWGG	5 cut(s)	163, 259, 297, 833, 1192
EcoT22I	ATGCAT	2 cut(s)	984, 1000
ErhI	CCWWGG	5 cut(s)	163, 259, 297, 833, 1192
FaeI	CATG	8 cut(s)	85, 167, 301, 452, 689, 837, 982, 1071
FalI	AAGNNNNNCTT	2 cut(s)	806, 838
FaqI	GGGAC	3 cut(s)	181, 249, 297
FatI	CATG	8 cut(s)	81, 163, 297, 448, 685, 833, 978, 1067
FblI	GTMKAC	1 cut(s)	740
Fnu4HI	GCNGC	2 cut(s)	188, 191
FokI	GGATG	1 cut(s)	98
Fsp4HI	GCNGC	2 cut(s)	188, 191
FspBI	CTAG	2 cut(s)	1023, 1267
GluI	GCNGC	2 cut(s)	188, 191
GsaI	CCCAGC	1 cut(s)	512
GsuI	CTGGAG	1 cut(s)	39
HaeIII	GGCC	1 cut(s)	332
HapII	CCGG	1 cut(s)	1141
HgaI	GACGC	1 cut(s)	25
Hin1II	CATG	8 cut(s)	85, 167, 301, 452, 689, 837, 982, 1071
HindIII	AAGCTT	1 cut(s)	788
HpaII	CCGG	1 cut(s)	1141
HphI	GGTGA	3 cut(s)	59, 568, 1140
Hpy166II	GTNNAC	4 cut(s)	154, 256, 610, 741
Hpy188I	TCNGA	5 cut(s)	126, 241, 308, 430, 648
Hpy188III	TCNNGA	6 cut(s)	18, 281, 314, 368, 865, 1104
Hpy8I	GTNNAC	4 cut(s)	154, 256, 610, 741
HpyAV	CCTTC	2 cut(s)	939, 974
HpyCH4III	ACNGT	3 cut(s)	415, 745, 781
HpyCH4IV	ACGT	1 cut(s)	854
HpyCH4V	TGCA	8 cut(s)	190, 343, 479, 682, 758, 845, 982, 998
HpyF10VI	GCNNNNNNNGC	1 cut(s)	814
HpyF3I	CTNAG	5 cut(s)	69, 201, 429, 668, 675
HpySE526I	ACGT	1 cut(s)	854
Hsp92II	CATG	8 cut(s)	85, 167, 301, 452, 689, 837, 982, 1071
Kzo9I	GATC	5 cut(s)	364, 858, 867, 931, 1213
LmnI	GCTCC	1 cut(s)	370
Lsp1109I	GCAGC	2 cut(s)	174, 202
LweI	GCATC	2 cut(s)	669, 991
MaeI	CTAG	2 cut(s)	1023, 1267
MaeII	ACGT	1 cut(s)	854
MaeIII	GTNAC	2 cut(s)	37, 349
MalI	GATC	5 cut(s)	366, 860, 869, 933, 1215
MboI	GATC	5 cut(s)	364, 858, 867, 931, 1213
MboII	GAAGA	5 cut(s)	431, 604, 721, 1210, 1252
MflI	RGATCY	3 cut(s)	858, 867, 1213
MhlI	GDGCHC	2 cut(s)	461, 753
MluCI	AATT	6 cut(s)	133, 146, 422, 462, 1179, 1227
MmeI	TCCRAC	2 cut(s)	40, 922
MnlI	CCTC	7 cut(s)	588, 698, 872, 882, 980, 1082, 1100
Mph1103I	ATGCAT	2 cut(s)	984, 1000
MroXI	GAANNNNTTC	1 cut(s)	276
MseI	TTAA	5 cut(s)	540, 572, 699, 993, 1182
MspCI	CTTAAG	1 cut(s)	571
MspI	CCGG	1 cut(s)	1141
Mva1269I	GAATGC	1 cut(s)	1174
MwoI	GCNNNNNNNGC	1 cut(s)	814
NcoI	CCATGG	3 cut(s)	163, 297, 833
NdeII	GATC	5 cut(s)	364, 858, 867, 931, 1213
NlaIII	CATG	8 cut(s)	85, 167, 301, 452, 689, 837, 982, 1071
NlaIV	GGNNCC	2 cut(s)	265, 860
NmuCI	GTSAC	2 cut(s)	37, 349
NsiI	ATGCAT	2 cut(s)	984, 1000
NspI	RCATGY	1 cut(s)	1071
PctI	GAATGC	1 cut(s)	1174
PdmI	GAANNNNTTC	1 cut(s)	276
PflMI	CCANNNNNTGG	1 cut(s)	941
PkrI	GCNGC	2 cut(s)	189, 192
PmaCI	CACGTG	1 cut(s)	855
PmlI	CACGTG	1 cut(s)	855
Ppu21I	YACGTR	1 cut(s)	855
PpuMI	RGGWCCY	1 cut(s)	263
PshBI	ATTAAT	2 cut(s)	699, 1182
PsiI	TTATAA	2 cut(s)	804, 1178
Psp5II	RGGWCCY	1 cut(s)	263
PspCI	CACGTG	1 cut(s)	855
PspFI	CCCAGC	1 cut(s)	508
PspN4I	GGNNCC	2 cut(s)	265, 860
PspPI	GGNCC	2 cut(s)	62, 263
PspPPI	RGGWCCY	1 cut(s)	263
PstI	CTGCAG	1 cut(s)	192
PsuI	RGATCY	3 cut(s)	858, 867, 1213
RsaI	GTAC	2 cut(s)	24, 257
RsaNI	GTAC	2 cut(s)	23, 256
SaqAI	TTAA	5 cut(s)	540, 572, 699, 993, 1182
SatI	GCNGC	2 cut(s)	188, 191
Sau3AI	GATC	5 cut(s)	364, 858, 867, 931, 1213
Sau96I	GGNCC	2 cut(s)	62, 263
SduI	GDGCHC	2 cut(s)	461, 753
SfaNI	GCATC	2 cut(s)	669, 991
SfcI	CTRYAG	2 cut(s)	188, 780
SinI	GGWCC	2 cut(s)	62, 263
SmlI	CTYRAG	2 cut(s)	571, 863
SmoI	CTYRAG	2 cut(s)	571, 863
SpeI	ACTAGT	1 cut(s)	1022
Sse9I	AATT	6 cut(s)	133, 146, 422, 462, 1179, 1227
SspI	AATATT	1 cut(s)	639
SspMI	CTAG	2 cut(s)	1023, 1267
StyI	CCWWGG	5 cut(s)	163, 259, 297, 833, 1192
TaaI	ACNGT	3 cut(s)	415, 745, 781
TaiI	ACGT	1 cut(s)	857
TaqI	TCGA	3 cut(s)	95, 417, 773
TasI	AATT	6 cut(s)	133, 146, 422, 462, 1179, 1227
TatI	WGTACW	1 cut(s)	22
Tru1I	TTAA	5 cut(s)	540, 572, 699, 993, 1182
Tru9I	TTAA	5 cut(s)	540, 572, 699, 993, 1182
TscAI	CASTG	1 cut(s)	765
TseFI	GTSAC	2 cut(s)	37, 349
TseI	GCWGC	2 cut(s)	187, 190
Tsp45I	GTSAC	2 cut(s)	37, 349
TspDTI	ATGAA	7 cut(s)	70, 102, 166, 397, 437, 486, 605
TspRI	CASTG	1 cut(s)	765
Van91I	CCANNNNNTGG	1 cut(s)	941
Vha464I	CTTAAG	1 cut(s)	571
VpaK11BI	GGWCC	2 cut(s)	62, 263
VspI	ATTAAT	2 cut(s)	699, 1182
XapI	RAATTY	2 cut(s)	133, 422
XceI	RCATGY	1 cut(s)	1071
XmiI	GTMKAC	1 cut(s)	740
XmnI	GAANNNNTTC	1 cut(s)	276
XspI	CTAG	2 cut(s)	1023, 1267
Zsp2I	ATGCAT	2 cut(s)	984, 1000

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.