Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0003761

Physical Location & Seq

Genomic Coordinates Forward (+)

54247048 .. 54285264

Gene Structure 38217 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG312700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGAAGTACCTGTCTTTCAAATGCATCAGGAAGCACATTGAAGATTTGACACAAGAAAAGTTTTCTTTGCAACGAGCACTCGAGGCTTCACGTGCTTTAGCTGAGTCATTGGCTTCTGAAAATTCTTCTTTGACAGAGACTTATAACCAACAGGTGAGAGACGATTTGGCGGATGGGCTTTTGGTGGATAAGTTGCTGGATAAGACGAGGATGAAGGGCACCGGGAAATGGACTAAAGGAAGAGAGGGACTTGAGTGGATTGAAGGTGGAGTGGGTAGAGAAACTAAGATCGCAGGTCGTGCGGCGGCTGAGGCAATGGTGACAAATCATGGGTGCCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010026 GO:0010090 GO:0010091 GO:0010154 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048468 GO:0048518 GO:0048522 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051302 GO:0051781 GO:0060255 GO:0061458 GO:0065007 GO:0071840 GO:0080090 GO:0090558 GO:0090567 GO:0090626 GO:0090698 GO:0099402 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

113

Amino Acids

12.57

Weight (kDa)

7.77

Isoelectric Point (pI)

22.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003761)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23980
fragaria_vesca	FvH4_4g05311 FvH4_4g05311 FvH4_4g05311 FvH4_4g05311
malus_domestica	MD13G1227500.v1.1 MD16G1232700.v1.1
prunus_persica	Prupe.1G054700_v2.0.a1 Prupe.1G054700_v2.0.a1
pyrus_communis	pycom16g19470
rosa_chinensis	RchiOBHm_Chr4g0396341
rosa_laevigata	RLG00000009549
rosa_multiflora	Rmu_ssc0000234.1_g000016
rosa_roxburghii	Rroxscaffold_5G00341160 Rroxscaffold_7G00160200
rosa_rugosa	Rorug03G0349900 Rorug03G0350000 Rorug03G0350100 Rorug03G0350200 Rorug03G0350300
rosa_samantha	Rh1CG210400 Rh2BG187800 Rh3BG188400 Rh4BG066500 Rh4CG073300 Rh4DG063400 Rh5BG463000 Rh5CG484900 Rh6AG475600 Rh6BG312700 Rh6CG021900 Rh6DG022000 Rh7DG258100
rosa_wichuraiana	Rw4G005470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	144
Acc36I	ACCTGC	1 cut(s)	284
AccB1I	GGYRCC	2 cut(s)	218, 333
AciI	CCGC	3 cut(s)	170, 302, 305
AcsI	RAATTY	1 cut(s)	121
AcvI	CACGTG	1 cut(s)	92
AfaI	GTAC	1 cut(s)	8
AfiI	CCNNNNNNNGG	1 cut(s)	228
AgsI	TTSAA	3 cut(s)	19, 41, 263
AluBI	AGCT	1 cut(s)	101
AluI	AGCT	1 cut(s)	101
Alw21I	GWGCWC	1 cut(s)	79
Alw26I	GTCTC	2 cut(s)	131, 153
Ama87I	CYCGRG	1 cut(s)	80
ApoI	RAATTY	1 cut(s)	121
AsuC2I	CCSGG	1 cut(s)	223
AsuHPI	GGTGA	2 cut(s)	166, 331
AvaI	CYCGRG	1 cut(s)	80
BaeGI	GKGCMC	2 cut(s)	221, 338
BanI	GGYRCC	2 cut(s)	218, 333
BbrPI	CACGTG	1 cut(s)	92
Bbv12I	GWGCWC	1 cut(s)	79
BbvCI	CCTCAGC	1 cut(s)	309
BccI	CCATC	1 cut(s)	167
BcnI	CCSGG	1 cut(s)	223
BcoDI	GTCTC	2 cut(s)	131, 153
BfuAI	ACCTGC	1 cut(s)	284
BisI	GCNGC	2 cut(s)	303, 306
BlsI	GCNGC	2 cut(s)	304, 307
Bme1390I	CCNGG	1 cut(s)	223
BmeT110I	CYCGRG	1 cut(s)	80
BmiI	GGNNCC	2 cut(s)	220, 335
BmrFI	CCNGG	1 cut(s)	223
BmsI	GCATC	1 cut(s)	33
Bpu10I	CCTNAGC	1 cut(s)	309
BpuEI	CTTGAG	1 cut(s)	272
BpuMI	CCSGG	1 cut(s)	223
BsaAI	YACGTR	1 cut(s)	92
Bsc4I	CCNNNNNNNGG	1 cut(s)	228
Bse3DI	GCAATG	1 cut(s)	321
BseGI	GGATG	2 cut(s)	178, 216
BseLI	CCNNNNNNNGG	1 cut(s)	228
BseMI	GCAATG	1 cut(s)	321
BseMII	CTCAG	2 cut(s)	93, 300
BseSI	GKGCMC	2 cut(s)	221, 338
BshNI	GGYRCC	2 cut(s)	218, 333
BsiHKAI	GWGCWC	1 cut(s)	79
BsiHKCI	CYCGRG	1 cut(s)	80
BsiSI	CCGG	1 cut(s)	222
BslFI	GGGAC	1 cut(s)	261
BslI	CCNNNNNNNGG	1 cut(s)	228
BsmAI	GTCTC	2 cut(s)	131, 153
BsmBI	CGTCTC	1 cut(s)	153
BsmFI	GGGAC	1 cut(s)	261
BsoBI	CYCGRG	1 cut(s)	80
Bsp1286I	GDGCHC	3 cut(s)	79, 221, 338
Bsp143I	GATC	1 cut(s)	288
BspACI	CCGC	3 cut(s)	170, 302, 305
BspCNI	CTCAG	2 cut(s)	94, 301
BspLI	GGNNCC	2 cut(s)	220, 335
BspMI	ACCTGC	1 cut(s)	284
BspT107I	GGYRCC	2 cut(s)	218, 333
BsrDI	GCAATG	1 cut(s)	321
BssMI	GATC	1 cut(s)	288
Bst6I	CTCTTC	1 cut(s)	235
BstAPI	GCANNNNNTGC	1 cut(s)	299
BstBAI	YACGTR	1 cut(s)	92
BstDEI	CTNAG	3 cut(s)	102, 285, 309
BstF5I	GGATG	2 cut(s)	178, 216
BstKTI	GATC	1 cut(s)	291
BstMAI	GTCTC	2 cut(s)	131, 153
BstMBI	GATC	1 cut(s)	288
BstMWI	GCNNNNNNNGC	4 cut(s)	83, 92, 299, 311
BstSCI	CCNGG	1 cut(s)	221
BstSLI	GKGCMC	2 cut(s)	221, 338
BtsCI	GGATG	2 cut(s)	178, 216
BveI	ACCTGC	1 cut(s)	284
Csp6I	GTAC	1 cut(s)	7
CviAII	CATG	1 cut(s)	329
CviJI	RGCY	5 cut(s)	86, 101, 113, 178, 308
CviKI_1	RGCY	5 cut(s)	86, 101, 113, 178, 308
CviQI	GTAC	1 cut(s)	7
DdeI	CTNAG	3 cut(s)	102, 285, 309
DpnI	GATC	1 cut(s)	290
DpnII	GATC	1 cut(s)	288
Eam1104I	CTCTTC	1 cut(s)	235
EarI	CTCTTC	1 cut(s)	235
EciI	GGCGGA	1 cut(s)	185
Eco72I	CACGTG	1 cut(s)	92
Eco88I	CYCGRG	1 cut(s)	80
EcoT22I	ATGCAT	1 cut(s)	26
Esp3I	CGTCTC	1 cut(s)	153
FaeI	CATG	1 cut(s)	332
FaiI	YATR	3 cut(s)	144, 330, 340
FaqI	GGGAC	1 cut(s)	261
FatI	CATG	1 cut(s)	328
Fnu4HI	GCNGC	2 cut(s)	303, 306
FokI	GGATG	2 cut(s)	185, 223
Fsp4HI	GCNGC	2 cut(s)	303, 306
GluI	GCNGC	2 cut(s)	303, 306
HapII	CCGG	1 cut(s)	222
Hin1II	CATG	1 cut(s)	332
HinfI	GANTC	1 cut(s)	104
HpaII	CCGG	1 cut(s)	222
HphI	GGTGA	2 cut(s)	166, 331
Hpy188I	TCNGA	1 cut(s)	118
Hpy188III	TCNNGA	1 cut(s)	28
HpyAV	CCTTC	2 cut(s)	208, 257
HpyCH4IV	ACGT	1 cut(s)	91
HpyCH4V	TGCA	2 cut(s)	24, 70
HpyF10VI	GCNNNNNNNGC	4 cut(s)	83, 92, 299, 311
HpyF3I	CTNAG	3 cut(s)	102, 285, 309
HpySE526I	ACGT	1 cut(s)	91
Hsp92II	CATG	1 cut(s)	332
Kzo9I	GATC	1 cut(s)	288
LpnPI	CCDG	6 cut(s)	13, 23, 137, 182, 235, 279
LweI	GCATC	1 cut(s)	33
MaeII	ACGT	1 cut(s)	91
MaeIII	GTNAC	1 cut(s)	319
MalI	GATC	1 cut(s)	290
MboI	GATC	1 cut(s)	288
MboII	GAAGA	3 cut(s)	53, 117, 252
MhlI	GDGCHC	3 cut(s)	79, 221, 338
MluCI	AATT	1 cut(s)	121
MlyI	GAGTC	1 cut(s)	113
MnlI	CCTC	4 cut(s)	76, 201, 238, 304
Mph1103I	ATGCAT	1 cut(s)	26
MspI	CCGG	1 cut(s)	222
MspR9I	CCNGG	1 cut(s)	223
MwoI	GCNNNNNNNGC	4 cut(s)	83, 92, 299, 311
NciI	CCSGG	1 cut(s)	223
NdeII	GATC	1 cut(s)	288
NlaIII	CATG	1 cut(s)	332
NlaIV	GGNNCC	2 cut(s)	220, 335
NmuCI	GTSAC	1 cut(s)	319
NsiI	ATGCAT	1 cut(s)	26
PaeR7I	CTCGAG	1 cut(s)	80
PkrI	GCNGC	2 cut(s)	304, 307
PleI	GAGTC	1 cut(s)	112
PmaCI	CACGTG	1 cut(s)	92
PmlI	CACGTG	1 cut(s)	92
PpsI	GAGTC	1 cut(s)	112
Ppu21I	YACGTR	1 cut(s)	92
PsiI	TTATAA	1 cut(s)	144
PspCI	CACGTG	1 cut(s)	92
PspN4I	GGNNCC	2 cut(s)	220, 335
PspXI	VCTCGAGB	1 cut(s)	80
RsaI	GTAC	1 cut(s)	8
RsaNI	GTAC	1 cut(s)	7
SatI	GCNGC	2 cut(s)	303, 306
Sau3AI	GATC	1 cut(s)	288
SchI	GAGTC	1 cut(s)	113
ScrFI	CCNGG	1 cut(s)	223
SduI	GDGCHC	3 cut(s)	79, 221, 338
SetI	ASST	6 cut(s)	12, 94, 103, 156, 268, 298
SfaNI	GCATC	1 cut(s)	33
Sfr274I	CTCGAG	1 cut(s)	80
SlaI	CTCGAG	1 cut(s)	80
SmlI	CTYRAG	2 cut(s)	80, 251
SmoI	CTYRAG	2 cut(s)	80, 251
Sse9I	AATT	1 cut(s)	121
SsiI	CCGC	3 cut(s)	170, 302, 305
StyD4I	CCNGG	1 cut(s)	221
TaiI	ACGT	1 cut(s)	94
TaqI	TCGA	1 cut(s)	81
TasI	AATT	1 cut(s)	121
TauI	GCSGC	2 cut(s)	305, 308
TseFI	GTSAC	1 cut(s)	319
Tsp45I	GTSAC	1 cut(s)	319
TspDTI	ATGAA	2 cut(s)	17, 227
XapI	RAATTY	1 cut(s)	121
XhoI	CTCGAG	1 cut(s)	80
Zsp2I	ATGCAT	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.