Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000234.1

Orthogroup ID

OG0003761

Physical Location & Seq

Genomic Coordinates Reverse (-)

90667 .. 105027

Gene Structure 14361 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000234.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2949 bp

atgtactttgagcaaggcgtatgtgattttcccctcttagaggtcttggtcacagaccactggtgcccttgtttcgggtttcgaatcgagctgatgaggctggctggaggacacagggcatttcgcggtggcagccactttgttgttagtggagctccgacagcacgatcgagttgtagagacatctggcagtcatgggaggcccgggtgcccagagcaatatcatgtgggcttgttttgtctctgggcctgctggtgttgcccaattcgacgcggaagcaagaacatttggaagctggaaagcgccggctggaggagttccgtaagaaaaaagcagcagaaagagctaagaagacgtcatcttctagccaggtcaatgtctctgaagttagctcaaatgagaaacaacctatagaaactgtacgggttacagtctcagatggagctggtacatctgatgggcctgtgggtggtttcactgaagcttcttctgtaatatcgagcaacggtgacaacgccattgatttttcccaccaaaaggaacatgcttcttcaaataatacacacagtagttcttcaacaaatgattctaatgcattttctgtagatcaagaatataagagatttggtgtctcaggtttttctggaccctcagatgttggttatagctatgatataaaagggatgaataatgatgttgaaaaagatactggtaccttaggtgttttaccatatggacccacttctaaccatcctattgctctacgtccacaagcaagtcaagaatttgaaagcaacacaagccaatccagcttttatgcgattcagtcctcagaacataaactttcttcgagggattccgtaggtgcaggtttgggcacttctcaacaatctgttgcaaaaatctcacctcagaactctgtcagcacatttccacaaagtgaggccagtaatttcagcacaatggctagtggccccgcttcatcatcttcgctttatcaagtaccagtgcaagagggtttgctcaagaatacttctcaacaatctgttgcaaaaatctcacctcagaactctgtcaacacatttccacaaagtgaggccggtaatttcagcacaatggctagtggccccgcttcatcatcttcgctttatcaagacttgattcaacctagtaccagtgcaagagggtttgctcaagaagttgggaaaagcatgcgtggtggtactgcagacttcggtgatcctgtgactttcagatttggagaaggaaaactaagtagctctgcaagtggtatgcctagcttgcagagtgcacaagttcaaacaactgaatccagtggttttggatatgatggtagaagtttgtccaatcatgtacagctagagtcagttacacctgatactagttctaggagatctcgtccatcattccttgattctcttaatgttcataaggcttcttccgggagtccttttcaacaagctgagcctgaggagtcatatttctccaacagttctaaatcaaatggcatgagcttcctgggatcactgcctttccataaggcatctatggacgatgggcctgttgcacctcattcatttgagcattccaataagtcttcattttctcctagtgctggggtggaccagcagaggccaatagttgaaagtagcttggacagaaaacacgagttctattcatctaagcaaaatgatgattttgcagctttggaacagcacattgaagatttgacacaagaaaagttttctttgcaacgagcactcgaggcttcacgtgctttagctgagtcattggcttctgaaaattcttctttgaccgagacttataaccaacagagaagcgttgttgaccaactaaaatctgacttggaaacgttacaagcggagatcaaggcccagctggtggaacttgaggctgtcagaaatgaatatgcaaatgcccatctagaatgtaatgcagccgatgaacgttccaagttattggcttctgaagttattagtttggaggagaaggcactcagactaaggtcaagtgagctaaagctggagaggcaattggagaactcacaagccgaaatctcttcatacaaaaaaagattgtctagcctagaaaaagaccgttcggatttgcagtcaactatcagtgctcttcaggaagagaagaagctattgcagtctatgctacggaaagcttccactaacgaaaggaaagctgatgttagcaagagtactactaacaagaaagatgtgtttacttctacagaagatctagcagatgaggaggtcggtcccgacaccgtagaccaggaaatgcgtgatgcatcctgtttccccatgctccctgaacatggacagtcaagttttgatgtcttgtctgtaaatatacctcctgatcagatgcgaacaattgagaacatcaatacactagtttctgagttagcattagagaaagaagaattgatacaatctttggcatctgagacatcacattgctccaagttgaaggaactgaataatgatttgtcccggaaacttgaagctcaaactcagagattagagcttttgactgcccaaagtatggctaatgagagtgttccaatcaggcaacctatttcgcacgatgtgcctgacagtactccatatgcagatgaaggggatgaggtggtggaaagggtcttgggatggattatgaaactttttcccggagggccatcaagacggagaactaggggtgtactggacagcgatctaatgtggcattgggagcatcctccacttggggttctaaaggccaacattgacggttcattccattctgaaacgagaagcggtggccaatgttttgtcatccgagattctactggaattttcatagttggaggggctagacctcttgttagcggccacattatgattttcttctcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010026 GO:0010090 GO:0010091 GO:0010154 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048468 GO:0048518 GO:0048522 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051302 GO:0051781 GO:0060255 GO:0061458 GO:0065007 GO:0071840 GO:0080090 GO:0090558 GO:0090567 GO:0090626 GO:0090698 GO:0099402 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

982

Amino Acids

107.11

Weight (kDa)

5.36

Isoelectric Point (pI)

59.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003761)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23980
fragaria_vesca	FvH4_4g05311 FvH4_4g05311 FvH4_4g05311 FvH4_4g05311
malus_domestica	MD13G1227500.v1.1 MD16G1232700.v1.1
prunus_persica	Prupe.1G054700_v2.0.a1 Prupe.1G054700_v2.0.a1
pyrus_communis	pycom16g19470
rosa_chinensis	RchiOBHm_Chr4g0396341
rosa_laevigata	RLG00000009549
rosa_multiflora	Rmu_ssc0000234.1_g000016
rosa_roxburghii	Rroxscaffold_5G00341160 Rroxscaffold_7G00160200
rosa_rugosa	Rorug03G0349900 Rorug03G0350000 Rorug03G0350100 Rorug03G0350200 Rorug03G0350300
rosa_samantha	Rh1CG210400 Rh2BG187800 Rh3BG188400 Rh4BG066500 Rh4CG073300 Rh4DG063400 Rh5BG463000 Rh5CG484900 Rh6AG475600 Rh6BG312700 Rh6CG021900 Rh6DG022000 Rh7DG258100
rosa_wichuraiana	Rw4G005470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1848
AatII	GACGTC	1 cut(s)	359
Acc36I	ACCTGC	1 cut(s)	860
Acc65I	GGTACC	1 cut(s)	713
AccB1I	GGYRCC	3 cut(s)	63, 208, 713
AccB7I	CCANNNNNTGG	2 cut(s)	1924, 2599
AccI	GTMKAC	1 cut(s)	2322
AccII	CGCG	2 cut(s)	126, 274
AciI	CCGC	7 cut(s)	126, 274, 978, 1131, 1904, 2850, 2922
AclI	AACGTT	2 cut(s)	1895, 1990
AclWI	GGATC	2 cut(s)	1235, 1552
AcoI	YGGCCR	2 cut(s)	2854, 2923
AcsI	RAATTY	3 cut(s)	785, 1825, 2886
AcuI	CTGAAG	4 cut(s)	405, 501, 2031, 2156
AcvI	CACGTG	1 cut(s)	1796
AcyI	GRCGYC	1 cut(s)	356
AdeI	CACNNNGTG	3 cut(s)	941, 1094, 2644
AhlI	ACTAGT	2 cut(s)	1403, 2446
AjnI	CCWGG	3 cut(s)	369, 1539, 2325
Alw21I	GWGCWC	4 cut(s)	157, 1315, 1783, 2170
Alw26I	GTCTC	7 cut(s)	174, 246, 385, 439, 637, 1835, 2495
Alw44I	GTGCAC	1 cut(s)	1311
AlwI	GGATC	2 cut(s)	1235, 1552
Ama87I	CYCGRG	2 cut(s)	204, 1784
ApaLI	GTGCAC	1 cut(s)	1311
ApeKI	GCWGC	4 cut(s)	132, 335, 1724, 1979
ApoI	RAATTY	3 cut(s)	785, 1825, 2886
Asp718I	GGTACC	1 cut(s)	713
AspLEI	GCGC	1 cut(s)	306
AsuC2I	CCSGG	5 cut(s)	205, 206, 1465, 2548, 2724
AsuHPI	GGTGA	4 cut(s)	521, 900, 1053, 1250
AsuII	TTCGAA	1 cut(s)	82
AvaI	CYCGRG	2 cut(s)	204, 1784
AvaII	GGWCC	4 cut(s)	647, 737, 1645, 2309
AxyI	CCTNAGG	2 cut(s)	718, 1491
BaeGI	GKGCMC	4 cut(s)	68, 213, 881, 1315
BalI	TGGCCA	1 cut(s)	2856
BanI	GGYRCC	3 cut(s)	63, 208, 713
BanII	GRGCYC	1 cut(s)	157
BarI	GAAGNNNNNNTAC	2 cut(s)	2466, 2498
BauI	CACGAG	1 cut(s)	1688
BbrPI	CACGTG	1 cut(s)	1796
BbsI	GAAGAC	2 cut(s)	359, 1611
Bbv12I	GWGCWC	4 cut(s)	157, 1315, 1783, 2170
BbvI	GCAGC	4 cut(s)	144, 347, 1736, 1991
BccI	CCATC	9 cut(s)	434, 452, 759, 1346, 1432, 1571, 1971, 2697, 2740
BciT130I	CCWGG	3 cut(s)	371, 1541, 2327
BclI	TGATCA	1 cut(s)	2413
BcnI	CCSGG	5 cut(s)	205, 206, 1465, 2548, 2724
BcoDI	GTCTC	7 cut(s)	174, 246, 385, 439, 637, 1835, 2495
BcuI	ACTAGT	2 cut(s)	1403, 2446
BfmI	CTRYAG	4 cut(s)	411, 603, 1227, 2280
BfoI	RGCGCY	1 cut(s)	307
BfuAI	ACCTGC	1 cut(s)	860
BglII	AGATCT	2 cut(s)	1415, 2287
BisI	GCNGC	5 cut(s)	133, 336, 1725, 1980, 2923
BlpI	GCTNAGC	1 cut(s)	1485
BlsI	GCNGC	5 cut(s)	134, 337, 1726, 1981, 2924
BmcAI	AGTACT	2 cut(s)	2251, 2656
Bme1390I	CCNGG	8 cut(s)	205, 206, 371, 1465, 1541, 2327, 2548, 2724
Bme18I	GGWCC	4 cut(s)	647, 737, 1645, 2309
BmeT110I	CYCGRG	2 cut(s)	204, 1784
BmiI	GGNNCC	8 cut(s)	65, 210, 649, 715, 739, 976, 1129, 2311
BmrFI	CCNGG	8 cut(s)	205, 206, 371, 1465, 1541, 2327, 2548, 2724
BmsI	GCATC	6 cut(s)	1574, 2329, 2351, 2409, 2504, 2797
BoxI	GACNNNNGTC	1 cut(s)	2047
BpiI	GAAGAC	2 cut(s)	359, 1611
BpmI	CTGGAG	3 cut(s)	126, 332, 2087
Bpu1102I	GCTNAGC	1 cut(s)	1485
Bpu14I	TTCGAA	1 cut(s)	82
BpuEI	CTTGAG	3 cut(s)	1010, 1179, 1952
BpuMI	CCSGG	5 cut(s)	205, 206, 1465, 2548, 2724
BsaAI	YACGTR	1 cut(s)	1796
BsaHI	GRCGYC	1 cut(s)	356
BsaJI	CCNNGG	2 cut(s)	204, 1540
BsaXI	ACNNNNNCTCC	2 cut(s)	1405, 1435
Bse118I	RCCGGY	2 cut(s)	306, 1100
Bse1I	ACTGG	8 cut(s)	65, 715, 948, 1007, 1176, 1335, 2763, 2887
Bse21I	CCTNAGG	2 cut(s)	718, 1491
Bse3DI	GCAATG	1 cut(s)	2509
BseBI	CCWGG	3 cut(s)	371, 1541, 2327
BseDI	CCNNGG	2 cut(s)	204, 1540
BseGI	GGATG	7 cut(s)	690, 751, 2342, 2683, 2708, 2788, 2868
BseMI	GCAATG	1 cut(s)	2509
BseNI	ACTGG	8 cut(s)	65, 715, 948, 1007, 1176, 1335, 2763, 2887
BseRI	GAGGAG	4 cut(s)	329, 1508, 2042, 2315
BseSI	GKGCMC	4 cut(s)	68, 213, 881, 1315
BseXI	GCAGC	4 cut(s)	144, 347, 1736, 1991
BseYI	CCCAGC	2 cut(s)	1637, 1917
BsgI	GTGCAG	1 cut(s)	888
Bsh1236I	CGCG	2 cut(s)	126, 274
Bsh1285I	CGRYCG	1 cut(s)	170
BshNI	GGYRCC	3 cut(s)	63, 208, 713
BsiEI	CGRYCG	1 cut(s)	170
BsiHKAI	GWGCWC	4 cut(s)	157, 1315, 1783, 2170
BsiHKCI	CYCGRG	2 cut(s)	204, 1784
BsiSI	CCGG	6 cut(s)	205, 307, 1101, 1464, 2548, 2724
BslFI	GGGAC	2 cut(s)	2295, 2530
BsmAI	GTCTC	7 cut(s)	174, 246, 385, 439, 637, 1835, 2495
BsmFI	GGGAC	2 cut(s)	2295, 2530
BsmI	GAATGC	1 cut(s)	1606
BsoBI	CYCGRG	2 cut(s)	204, 1784
Bsp119I	TTCGAA	1 cut(s)	82
Bsp1286I	GDGCHC	7 cut(s)	68, 157, 213, 881, 1315, 1783, 2170
Bsp1407I	TGTACA	1 cut(s)	1375
Bsp143I	GATC	9 cut(s)	167, 607, 1240, 1415, 1544, 1908, 2287, 2413, 2767
Bsp1720I	GCTNAGC	1 cut(s)	1485
BspACI	CCGC	7 cut(s)	126, 274, 978, 1131, 1904, 2850, 2922
BspFNI	CGCG	2 cut(s)	126, 274
BspLI	GGNNCC	8 cut(s)	65, 210, 649, 715, 739, 976, 1129, 2311
BspMAI	CTGCAG	1 cut(s)	1231
BspMI	ACCTGC	1 cut(s)	860
BspPI	GGATC	2 cut(s)	1235, 1552
BspQI	GCTCTTC	1 cut(s)	2175
BspT104I	TTCGAA	1 cut(s)	82
BspT107I	GGYRCC	3 cut(s)	63, 208, 713
BsrDI	GCAATG	1 cut(s)	2509
BsrFI	RCCGGY	2 cut(s)	306, 1100
BsrGI	TGTACA	1 cut(s)	1375
BsrI	ACTGG	8 cut(s)	65, 715, 948, 1007, 1176, 1335, 2763, 2887
BssAI	RCCGGY	2 cut(s)	306, 1100
BssECI	CCNNGG	2 cut(s)	204, 1540
BssMI	GATC	9 cut(s)	167, 607, 1240, 1415, 1544, 1908, 2287, 2413, 2767
BssNI	GRCGYC	1 cut(s)	356
BssSI	CACGAG	1 cut(s)	1688
Bst2BI	CACGAG	1 cut(s)	1688
Bst2UI	CCWGG	3 cut(s)	371, 1541, 2327
Bst6I	CTCTTC	3 cut(s)	2107, 2172, 2175
BstACI	GRCGYC	1 cut(s)	356
BstAPI	GCANNNNNTGC	2 cut(s)	2200, 2644
BstAUI	TGTACA	1 cut(s)	1375
BstBAI	YACGTR	1 cut(s)	1796
BstBI	TTCGAA	1 cut(s)	82
BstC8I	GCNNGC	5 cut(s)	102, 251, 308, 1214, 1304
BstENI	CCTNNNNNAGG	1 cut(s)	38
BstF5I	GGATG	7 cut(s)	690, 751, 2342, 2683, 2708, 2788, 2868
BstFNI	CGCG	2 cut(s)	126, 274
BstH2I	RGCGCY	1 cut(s)	307
BstHHI	GCGC	1 cut(s)	306
BstKTI	GATC	9 cut(s)	170, 610, 1243, 1418, 1547, 1911, 2290, 2416, 2770
BstMAI	GTCTC	7 cut(s)	174, 246, 385, 439, 637, 1835, 2495
BstMBI	GATC	9 cut(s)	167, 607, 1240, 1415, 1544, 1908, 2287, 2413, 2767
BstMCI	CGRYCG	1 cut(s)	170
BstNI	CCWGG	3 cut(s)	371, 1541, 2327
BstNSI	RCATGY	2 cut(s)	548, 1216
BstPAI	GACNNNNGTC	1 cut(s)	2047
BstSCI	CCNGG	8 cut(s)	203, 204, 369, 1463, 1539, 2325, 2546, 2722
BstSFI	CTRYAG	4 cut(s)	411, 603, 1227, 2280
BstSLI	GKGCMC	4 cut(s)	68, 213, 881, 1315
BstUI	CGCG	2 cut(s)	126, 274
BstV1I	GCAGC	4 cut(s)	144, 347, 1736, 1991
BstV2I	GAAGAC	2 cut(s)	359, 1611
BstX2I	RGATCY	2 cut(s)	1415, 2287
BstXI	CCANNNNNNTGG	1 cut(s)	2002
BstYI	RGATCY	2 cut(s)	1415, 2287
Bsu36I	CCTNAGG	2 cut(s)	718, 1491
BtsCI	GGATG	7 cut(s)	690, 751, 2342, 2683, 2708, 2788, 2868
BtsI	GCAGTG	1 cut(s)	1547
BtsIMutI	CAGTG	7 cut(s)	58, 477, 1014, 1183, 1342, 1547, 2170
BveI	ACCTGC	1 cut(s)	860
Cac8I	GCNNGC	5 cut(s)	102, 251, 308, 1214, 1304
CfoI	GCGC	1 cut(s)	306
Cfr10I	RCCGGY	2 cut(s)	306, 1100
Cfr9I	CCCGGG	1 cut(s)	204
CseI	GACGC	1 cut(s)	280
CviAII	CATG	8 cut(s)	195, 225, 545, 1213, 1373, 1531, 2356, 2369
DpnI	GATC	9 cut(s)	169, 609, 1242, 1417, 1546, 1910, 2289, 2415, 2769
DpnII	GATC	9 cut(s)	167, 607, 1240, 1415, 1544, 1908, 2287, 2413, 2767
DraIII	CACNNNGTG	3 cut(s)	941, 1094, 2644
EaeI	YGGCCR	2 cut(s)	2854, 2923
Eam1104I	CTCTTC	3 cut(s)	2107, 2172, 2175
EarI	CTCTTC	3 cut(s)	2107, 2172, 2175
Ecl136II	GAGCTC	1 cut(s)	155
Eco24I	GRGCYC	1 cut(s)	157
Eco47I	GGWCC	4 cut(s)	647, 737, 1645, 2309
Eco53kI	GAGCTC	1 cut(s)	155
Eco57I	CTGAAG	4 cut(s)	405, 501, 2031, 2156
Eco72I	CACGTG	1 cut(s)	1796
Eco81I	CCTNAGG	2 cut(s)	718, 1491
Eco88I	CYCGRG	2 cut(s)	204, 1784
EcoICRI	GAGCTC	1 cut(s)	155
EcoNI	CCTNNNNNAGG	1 cut(s)	38
EcoRII	CCWGG	3 cut(s)	369, 1539, 2325
EcoT22I	ATGCAT	2 cut(s)	598, 2344
EcoT38I	GRGCYC	1 cut(s)	157
FaeI	CATG	8 cut(s)	198, 228, 548, 1216, 1376, 1534, 2359, 2372
FaqI	GGGAC	2 cut(s)	2295, 2530
FatI	CATG	8 cut(s)	194, 224, 544, 1212, 1372, 1530, 2355, 2368
FauI	CCCGC	2 cut(s)	985, 1138
FauNDI	CATATG	2 cut(s)	733, 2662
FbaI	TGATCA	1 cut(s)	2413
FblI	GTMKAC	1 cut(s)	2322
Fnu4HI	GCNGC	5 cut(s)	133, 336, 1725, 1980, 2923
FokI	GGATG	7 cut(s)	697, 738, 2329, 2690, 2715, 2775, 2855
FriOI	GRGCYC	1 cut(s)	157
Fsp4HI	GCNGC	5 cut(s)	133, 336, 1725, 1980, 2923
GlaI	GCGC	1 cut(s)	305
GluI	GCNGC	5 cut(s)	133, 336, 1725, 1980, 2923
GsaI	CCCAGC	2 cut(s)	1641, 1921
GsuI	CTGGAG	3 cut(s)	126, 332, 2087
HaeII	RGCGCY	1 cut(s)	307
HapII	CCGG	6 cut(s)	205, 307, 1101, 1464, 2548, 2724
HgaI	GACGC	1 cut(s)	280
HhaI	GCGC	1 cut(s)	306
Hin1I	GRCGYC	1 cut(s)	356
Hin1II	CATG	8 cut(s)	198, 228, 548, 1216, 1376, 1534, 2359, 2372
Hin6I	GCGC	1 cut(s)	304
HinP1I	GCGC	1 cut(s)	304
HincII	GTYRAC	3 cut(s)	1078, 1870, 2157
HindII	GTYRAC	3 cut(s)	1078, 1870, 2157
HindIII	AAGCTT	2 cut(s)	483, 2211
HpaII	CCGG	6 cut(s)	205, 307, 1101, 1464, 2548, 2724
HphI	GGTGA	4 cut(s)	521, 900, 1053, 1250
Hpy166II	GTNNAC	9 cut(s)	770, 1078, 1313, 1645, 1870, 2157, 2274, 2323, 2756
Hpy8I	GTNNAC	9 cut(s)	770, 1078, 1313, 1645, 1870, 2157, 2274, 2323, 2756
Hpy99I	CGWCG	1 cut(s)	274
HpyAV	CCTTC	4 cut(s)	1259, 2026, 2518, 2666
HpyCH4IV	ACGT	5 cut(s)	356, 766, 1795, 1895, 1990
HpySE526I	ACGT	5 cut(s)	356, 766, 1795, 1895, 1990
Hsp92I	GRCGYC	1 cut(s)	356
Hsp92II	CATG	8 cut(s)	198, 228, 548, 1216, 1376, 1534, 2359, 2372
HspAI	GCGC	1 cut(s)	304
KpnI	GGTACC	1 cut(s)	717
KroI	GCCGGC	1 cut(s)	306
KroNI	GCCGGC	1 cut(s)	308
Ksp22I	TGATCA	1 cut(s)	2413
Kzo9I	GATC	9 cut(s)	167, 607, 1240, 1415, 1544, 1908, 2287, 2413, 2767
LguI	GCTCTTC	1 cut(s)	2175
LmnI	GCTCC	6 cut(s)	152, 160, 443, 2364, 2519, 2785
Lsp1109I	GCAGC	4 cut(s)	144, 347, 1736, 1991
LweI	GCATC	6 cut(s)	1574, 2329, 2351, 2409, 2504, 2797
MaeII	ACGT	5 cut(s)	356, 766, 1795, 1895, 1990
MaeIII	GTNAC	6 cut(s)	49, 427, 509, 1246, 1390, 1896
MalI	GATC	9 cut(s)	169, 609, 1242, 1417, 1546, 1910, 2289, 2415, 2769
MboI	GATC	9 cut(s)	167, 607, 1240, 1415, 1544, 1908, 2287, 2413, 2767
MfeI	CAATTG	2 cut(s)	2075, 2427
MflI	RGATCY	2 cut(s)	1415, 2287
MhlI	GDGCHC	7 cut(s)	68, 157, 213, 881, 1315, 1783, 2170
MlsI	TGGCCA	1 cut(s)	2856
MluCI	AATT	9 cut(s)	265, 785, 952, 1105, 1825, 2075, 2427, 2477, 2886
MluNI	TGGCCA	1 cut(s)	2856
MlyI	GAGTC	4 cut(s)	1394, 1477, 1505, 1817
MmeI	TCCRAC	3 cut(s)	182, 1533, 2878
Mox20I	TGGCCA	1 cut(s)	2856
Mph1103I	ATGCAT	2 cut(s)	598, 2344
MroNI	GCCGGC	1 cut(s)	306
MscI	TGGCCA	1 cut(s)	2856
MseI	TTAA	2 cut(s)	1443, 2947
Msp20I	TGGCCA	1 cut(s)	2856
MspA1I	CMGCKG	1 cut(s)	1921
MspI	CCGG	6 cut(s)	205, 307, 1101, 1464, 2548, 2724
MspR9I	CCNGG	8 cut(s)	205, 206, 371, 1465, 1541, 2327, 2548, 2724
MunI	CAATTG	2 cut(s)	2075, 2427
Mva1269I	GAATGC	1 cut(s)	1606
MvaI	CCWGG	3 cut(s)	371, 1541, 2327
MvnI	CGCG	2 cut(s)	126, 274
NaeI	GCCGGC	1 cut(s)	308
NciI	CCSGG	5 cut(s)	205, 206, 1465, 2548, 2724
NdeI	CATATG	2 cut(s)	733, 2662
NdeII	GATC	9 cut(s)	167, 607, 1240, 1415, 1544, 1908, 2287, 2413, 2767
NgoMIV	GCCGGC	1 cut(s)	306
NlaIII	CATG	8 cut(s)	198, 228, 548, 1216, 1376, 1534, 2359, 2372
NlaIV	GGNNCC	8 cut(s)	65, 210, 649, 715, 739, 976, 1129, 2311
NmuCI	GTSAC	3 cut(s)	49, 509, 1246
NsiI	ATGCAT	2 cut(s)	598, 2344
NspI	RCATGY	2 cut(s)	548, 1216
NspV	TTCGAA	1 cut(s)	82
PaeI	GCATGC	1 cut(s)	1216
PaeR7I	CTCGAG	1 cut(s)	1784
PciSI	GCTCTTC	1 cut(s)	2175
PctI	GAATGC	1 cut(s)	1606
PdiI	GCCGGC	1 cut(s)	308
PfeI	GAWTC	8 cut(s)	84, 587, 823, 857, 1162, 1331, 1436, 2876
PflMI	CCANNNNNTGG	2 cut(s)	1924, 2599
PfoI	TCCNGGA	3 cut(s)	1463, 2546, 2722
PkrI	GCNGC	5 cut(s)	134, 337, 1726, 1981, 2924
Ple19I	CGATCG	1 cut(s)	170
PleI	GAGTC	4 cut(s)	1393, 1476, 1504, 1816
PmaCI	CACGTG	1 cut(s)	1796
PmlI	CACGTG	1 cut(s)	1796
PpsI	GAGTC	4 cut(s)	1393, 1476, 1504, 1816
Ppu21I	YACGTR	1 cut(s)	1796
PshAI	GACNNNNGTC	1 cut(s)	2047
PsiI	TTATAA	1 cut(s)	1848
Psp124BI	GAGCTC	1 cut(s)	157
Psp1406I	AACGTT	2 cut(s)	1895, 1990
Psp6I	CCWGG	3 cut(s)	369, 1539, 2325
PspCI	CACGTG	1 cut(s)	1796
PspFI	CCCAGC	2 cut(s)	1637, 1917
PspGI	CCWGG	3 cut(s)	369, 1539, 2325
PspN4I	GGNNCC	8 cut(s)	65, 210, 649, 715, 739, 976, 1129, 2311
PspXI	VCTCGAGB	1 cut(s)	1784
PstI	CTGCAG	1 cut(s)	1231
PsuI	RGATCY	2 cut(s)	1415, 2287
PvuI	CGATCG	1 cut(s)	170
PvuII	CAGCTG	1 cut(s)	1921
SacI	GAGCTC	1 cut(s)	157
SapI	GCTCTTC	1 cut(s)	2175
SaqAI	TTAA	2 cut(s)	1443, 2947
SatI	GCNGC	5 cut(s)	133, 336, 1725, 1980, 2923
Sau3AI	GATC	9 cut(s)	167, 607, 1240, 1415, 1544, 1908, 2287, 2413, 2767
ScaI	AGTACT	2 cut(s)	2251, 2656
SchI	GAGTC	4 cut(s)	1394, 1477, 1505, 1817
ScrFI	CCNGG	8 cut(s)	205, 206, 371, 1465, 1541, 2327, 2548, 2724
SduI	GDGCHC	7 cut(s)	68, 157, 213, 881, 1315, 1783, 2170
SfaNI	GCATC	6 cut(s)	1574, 2329, 2351, 2409, 2504, 2797
SfcI	CTRYAG	4 cut(s)	411, 603, 1227, 2280
Sfr274I	CTCGAG	1 cut(s)	1784
SfuI	TTCGAA	1 cut(s)	82
SinI	GGWCC	4 cut(s)	647, 737, 1645, 2309
SlaI	CTCGAG	1 cut(s)	1784
SmaI	CCCGGG	1 cut(s)	206
SmlI	CTYRAG	4 cut(s)	1025, 1194, 1784, 1931
SmoI	CTYRAG	4 cut(s)	1025, 1194, 1784, 1931
SpeI	ACTAGT	2 cut(s)	1403, 2446
SphI	GCATGC	1 cut(s)	1216
Sse9I	AATT	9 cut(s)	265, 785, 952, 1105, 1825, 2075, 2427, 2477, 2886
SsiI	CCGC	7 cut(s)	126, 274, 978, 1131, 1904, 2850, 2922
SstI	GAGCTC	1 cut(s)	157
StyD4I	CCNGG	8 cut(s)	203, 204, 369, 1463, 1539, 2325, 2546, 2722
TaiI	ACGT	5 cut(s)	359, 769, 1798, 1898, 1993
TaqI	TCGA	7 cut(s)	82, 87, 170, 269, 500, 851, 1785
TaqII	GACCGA	2 cut(s)	1853, 2297
TasI	AATT	9 cut(s)	265, 785, 952, 1105, 1825, 2075, 2427, 2477, 2886
TatI	WGTACW	5 cut(s)	3, 1375, 2249, 2654, 2755
TauI	GCSGC	1 cut(s)	2925
TfiI	GAWTC	8 cut(s)	84, 587, 823, 857, 1162, 1331, 1436, 2876
Tru1I	TTAA	2 cut(s)	1443, 2947
Tru9I	TTAA	2 cut(s)	1443, 2947
TscAI	CASTG	7 cut(s)	65, 484, 1014, 1183, 1342, 1554, 2170
TseFI	GTSAC	3 cut(s)	49, 509, 1246
TseI	GCWGC	4 cut(s)	132, 335, 1724, 1979
Tsp45I	GTSAC	3 cut(s)	49, 509, 1246
TspGWI	ACGGA	4 cut(s)	311, 850, 2221, 2755
TspMI	CCCGGG	1 cut(s)	204
TspRI	CASTG	7 cut(s)	65, 484, 1014, 1183, 1342, 1554, 2170
Van91I	CCANNNNNTGG	2 cut(s)	1924, 2599
VneI	GTGCAC	1 cut(s)	1311
VpaK11BI	GGWCC	4 cut(s)	647, 737, 1645, 2309
XagI	CCTNNNNNAGG	1 cut(s)	38
XapI	RAATTY	3 cut(s)	785, 1825, 2886
XbaI	TCTAGA	1 cut(s)	1966
XceI	RCATGY	2 cut(s)	548, 1216
XhoI	CTCGAG	1 cut(s)	1784
XmaI	CCCGGG	1 cut(s)	204
XmiI	GTMKAC	1 cut(s)	2322
ZraI	GACGTC	1 cut(s)	357
ZrmI	AGTACT	2 cut(s)	2251, 2656
Zsp2I	ATGCAT	2 cut(s)	598, 2344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.