Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0003761

Physical Location & Seq

Genomic Coordinates Reverse (-)

65749657 .. 65749953

Gene Structure 297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG475600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGGCAGCTAGCCCACTCGACTCAACCCTCACTGCCTCAACCATCTCCGATTCCAACCCTCCTCTGATTACTCAAGTGTCATCGACACCGTCGGCCAAGCCTTCTCCAAGTTTAAAGTCGGCGATGCTGTTTGCTCCGTCACTGCCCTCAGGTCTTTTGCTCAGTTCATCATCGTCGATCAGTCCAAGTGCCCGAGGGGTCCCACCAGGCGTACTCCAAAGTTCAGGATATTCTCAACAAGGTCACCGCCCAGGTGGTGAACAGGCCGTGCGTGGCGAGGGCAGGTCTGAATTGTGG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

99

Amino Acids

9.99

Weight (kDa)

8.27

Isoelectric Point (pI)

79.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003761)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23980
fragaria_vesca	FvH4_4g05311 FvH4_4g05311 FvH4_4g05311 FvH4_4g05311
malus_domestica	MD13G1227500.v1.1 MD16G1232700.v1.1
prunus_persica	Prupe.1G054700_v2.0.a1 Prupe.1G054700_v2.0.a1
pyrus_communis	pycom16g19470
rosa_chinensis	RchiOBHm_Chr4g0396341
rosa_laevigata	RLG00000009549
rosa_multiflora	Rmu_ssc0000234.1_g000016
rosa_roxburghii	Rroxscaffold_5G00341160 Rroxscaffold_7G00160200
rosa_rugosa	Rorug03G0349900 Rorug03G0350000 Rorug03G0350100 Rorug03G0350200 Rorug03G0350300
rosa_samantha	Rh1CG210400 Rh2BG187800 Rh3BG188400 Rh4BG066500 Rh4CG073300 Rh4DG063400 Rh5BG463000 Rh5CG484900 Rh6AG475600 Rh6BG312700 Rh6CG021900 Rh6DG022000 Rh7DG258100
rosa_wichuraiana	Rw4G005470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	273
AciI	CCGC	1 cut(s)	247
AcoI	YGGCCR	1 cut(s)	93
AfaI	GTAC	1 cut(s)	213
AjnI	CCWGG	2 cut(s)	205, 250
AluBI	AGCT	1 cut(s)	8
AluI	AGCT	1 cut(s)	8
Ama87I	CYCGRG	1 cut(s)	192
AoxI	GGCC	2 cut(s)	93, 264
ApeKI	GCWGC	1 cut(s)	5
AspS9I	GGNCC	1 cut(s)	199
AsuHPI	GGTGA	2 cut(s)	236, 269
AsuNHI	GCTAGC	1 cut(s)	8
AvaI	CYCGRG	1 cut(s)	192
AvaII	GGWCC	1 cut(s)	199
AxyI	CCTNAGG	1 cut(s)	148
BaeGI	GKGCMC	1 cut(s)	193
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	1 cut(s)	50
BceAI	ACGGC	1 cut(s)	251
BciT130I	CCWGG	2 cut(s)	207, 252
BfaI	CTAG	1 cut(s)	9
BfuAI	ACCTGC	1 cut(s)	273
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
Bme1390I	CCNGG	2 cut(s)	207, 252
Bme18I	GGWCC	1 cut(s)	199
BmeT110I	CYCGRG	1 cut(s)	192
BmgT120I	GGNCC	1 cut(s)	199
BmiI	GGNNCC	2 cut(s)	200, 201
BmrFI	CCNGG	2 cut(s)	207, 252
BmsI	GCATC	1 cut(s)	114
BmtI	GCTAGC	1 cut(s)	12
BpuEI	CTTGAG	1 cut(s)	57
BsaJI	CCNNGG	2 cut(s)	193, 250
Bse21I	CCTNAGG	1 cut(s)	148
BseBI	CCWGG	2 cut(s)	207, 252
BseDI	CCNNGG	2 cut(s)	193, 250
BseMII	CTCAG	2 cut(s)	162, 175
BseRI	GAGGAG	1 cut(s)	51
BseSI	GKGCMC	1 cut(s)	193
BseXI	GCAGC	1 cut(s)	17
BshFI	GGCC	2 cut(s)	95, 266
BsiHKCI	CYCGRG	1 cut(s)	192
BslFI	GGGAC	1 cut(s)	185
BsmFI	GGGAC	1 cut(s)	185
BsnI	GGCC	2 cut(s)	95, 266
BsoBI	CYCGRG	1 cut(s)	192
Bsp1286I	GDGCHC	1 cut(s)	193
Bsp143I	GATC	1 cut(s)	177
BspACI	CCGC	1 cut(s)	247
BspANI	GGCC	2 cut(s)	95, 266
BspCNI	CTCAG	2 cut(s)	161, 174
BspLI	GGNNCC	2 cut(s)	200, 201
BspMI	ACCTGC	1 cut(s)	273
BspOI	GCTAGC	1 cut(s)	12
BssECI	CCNNGG	2 cut(s)	193, 250
BssMI	GATC	1 cut(s)	177
Bst2UI	CCWGG	2 cut(s)	207, 252
Bst4CI	ACNGT	1 cut(s)	90
BstC8I	GCNNGC	1 cut(s)	10
BstDEI	CTNAG	2 cut(s)	148, 161
BstEII	GGTNACC	1 cut(s)	242
BstKTI	GATC	1 cut(s)	180
BstMBI	GATC	1 cut(s)	177
BstNI	CCWGG	2 cut(s)	207, 252
BstPI	GGTNACC	1 cut(s)	242
BstSCI	CCNGG	2 cut(s)	205, 250
BstSLI	GKGCMC	1 cut(s)	193
BstV1I	GCAGC	1 cut(s)	17
Bsu36I	CCTNAGG	1 cut(s)	148
BsuRI	GGCC	2 cut(s)	95, 266
BtgZI	GCGATG	1 cut(s)	137
BtsI	GCAGTG	2 cut(s)	30, 140
BtsIMutI	CAGTG	2 cut(s)	30, 140
BveI	ACCTGC	1 cut(s)	273
Cac8I	GCNNGC	1 cut(s)	10
Cfr13I	GGNCC	1 cut(s)	199
Csp6I	GTAC	1 cut(s)	212
CviJI	RGCY	5 cut(s)	8, 12, 95, 100, 266
CviKI_1	RGCY	5 cut(s)	8, 12, 95, 100, 266
CviQI	GTAC	1 cut(s)	212
DdeI	CTNAG	2 cut(s)	148, 161
DpnI	GATC	1 cut(s)	179
DpnII	GATC	1 cut(s)	177
DraI	TTTAAA	1 cut(s)	114
EaeI	YGGCCR	1 cut(s)	93
Eco47I	GGWCC	1 cut(s)	199
Eco81I	CCTNAGG	1 cut(s)	148
Eco88I	CYCGRG	1 cut(s)	192
Eco91I	GGTNACC	1 cut(s)	242
EcoO109I	RGGNCCY	1 cut(s)	199
EcoO65I	GGTNACC	1 cut(s)	242
EcoRII	CCWGG	2 cut(s)	205, 250
FaqI	GGGAC	1 cut(s)	185
Fnu4HI	GCNGC	1 cut(s)	6
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	1 cut(s)	9
GluI	GCNGC	1 cut(s)	6
HaeIII	GGCC	2 cut(s)	95, 266
HinfI	GANTC	2 cut(s)	20, 50
HphI	GGTGA	2 cut(s)	236, 269
Hpy166II	GTNNAC	1 cut(s)	260
Hpy188I	TCNGA	3 cut(s)	49, 66, 289
Hpy188III	TCNNGA	1 cut(s)	225
Hpy8I	GTNNAC	1 cut(s)	260
Hpy99I	CGWCG	2 cut(s)	94, 178
HpyAV	CCTTC	1 cut(s)	111
HpyCH4III	ACNGT	1 cut(s)	90
HpyF3I	CTNAG	2 cut(s)	148, 161
KflI	GGGWCCC	1 cut(s)	199
Kzo9I	GATC	1 cut(s)	177
LmnI	GCTCC	1 cut(s)	139
LpnPI	CCDG	8 cut(s)	135, 192, 210, 219, 237, 248, 264, 268
Lsp1109I	GCAGC	1 cut(s)	17
LweI	GCATC	1 cut(s)	114
MaeI	CTAG	1 cut(s)	9
MaeIII	GTNAC	2 cut(s)	138, 242
MalI	GATC	1 cut(s)	179
MboI	GATC	1 cut(s)	177
MhlI	GDGCHC	1 cut(s)	193
MluCI	AATT	1 cut(s)	290
MlyI	GAGTC	1 cut(s)	14
MmeI	TCCRAC	1 cut(s)	78
MnlI	CCTC	7 cut(s)	38, 46, 69, 72, 157, 188, 271
MseI	TTAA	1 cut(s)	113
MspR9I	CCNGG	2 cut(s)	207, 252
MvaI	CCWGG	2 cut(s)	207, 252
NdeII	GATC	1 cut(s)	177
NheI	GCTAGC	1 cut(s)	8
NlaIV	GGNNCC	2 cut(s)	200, 201
NmuCI	GTSAC	2 cut(s)	138, 242
PfeI	GAWTC	1 cut(s)	50
PflFI	GACNNNGTC	1 cut(s)	88
PkrI	GCNGC	1 cut(s)	7
PleI	GAGTC	1 cut(s)	14
PpsI	GAGTC	1 cut(s)	14
PpuMI	RGGWCCY	1 cut(s)	199
Psp5II	RGGWCCY	1 cut(s)	199
Psp6I	CCWGG	2 cut(s)	205, 250
PspEI	GGTNACC	1 cut(s)	242
PspGI	CCWGG	2 cut(s)	205, 250
PspN4I	GGNNCC	2 cut(s)	200, 201
PspPI	GGNCC	1 cut(s)	199
PspPPI	RGGWCCY	1 cut(s)	199
PsyI	GACNNNGTC	1 cut(s)	88
RsaI	GTAC	1 cut(s)	213
RsaNI	GTAC	1 cut(s)	212
SaqAI	TTAA	1 cut(s)	113
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	1 cut(s)	177
Sau96I	GGNCC	1 cut(s)	199
SchI	GAGTC	1 cut(s)	14
ScrFI	CCNGG	2 cut(s)	207, 252
SduI	GDGCHC	1 cut(s)	193
SetI	ASST	5 cut(s)	10, 154, 244, 256, 287
SfaNI	GCATC	1 cut(s)	114
SinI	GGWCC	1 cut(s)	199
SmlI	CTYRAG	1 cut(s)	72
SmoI	CTYRAG	1 cut(s)	72
Sse9I	AATT	1 cut(s)	290
SsiI	CCGC	1 cut(s)	247
SspMI	CTAG	1 cut(s)	9
StyD4I	CCNGG	2 cut(s)	205, 250
TaaI	ACNGT	1 cut(s)	90
TaqI	TCGA	3 cut(s)	18, 83, 176
TasI	AATT	1 cut(s)	290
TfiI	GAWTC	1 cut(s)	50
Tru1I	TTAA	1 cut(s)	113
Tru9I	TTAA	1 cut(s)	113
TscAI	CASTG	2 cut(s)	37, 147
TseFI	GTSAC	2 cut(s)	138, 242
TseI	GCWGC	1 cut(s)	5
Tsp45I	GTSAC	2 cut(s)	138, 242
TspDTI	ATGAA	1 cut(s)	156
TspGWI	ACGGA	1 cut(s)	126
TspRI	CASTG	2 cut(s)	37, 147
Tth111I	GACNNNGTC	1 cut(s)	88
VpaK11BI	GGWCC	1 cut(s)	199
XspI	CTAG	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.