Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0003761

Physical Location & Seq

Genomic Coordinates Forward (+)

16790845 .. 16791983

Gene Structure 1139 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG187800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGAAGTACCTGTCTTTCAAATGCATCAGGAAGGTACTGGGGGCTATTTGGATCATATGTGCTCCTAGAATACTTCTCAAGCACATTGAAGATTTGACACAAGAAAAGTTTTCTTTGCAACGAGCACTCGAGGCTTCACGTGCTTTAGCTGAGTCATTGGCTTCTGAAAATTCTTCTTTGACAGAGACTTATAACCAACAGAGAAGCGTTGTTGACCAACTAAAATCTGACTTGGAAACGTTACAAGCAGAGATCAAGGCCCAGATGGTTAGAGTTGATAATCCCTTATTTCTGGTCATTCTAGATCTCATTTACATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010026 GO:0010090 GO:0010091 GO:0010154 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048468 GO:0048518 GO:0048522 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051302 GO:0051781 GO:0060255 GO:0061458 GO:0065007 GO:0071840 GO:0080090 GO:0090558 GO:0090567 GO:0090626 GO:0090698 GO:0099402 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

106

Amino Acids

12.15

Weight (kDa)

6.57

Isoelectric Point (pI)

39.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003761)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23980
fragaria_vesca	FvH4_4g05311 FvH4_4g05311 FvH4_4g05311 FvH4_4g05311
malus_domestica	MD13G1227500.v1.1 MD16G1232700.v1.1
prunus_persica	Prupe.1G054700_v2.0.a1 Prupe.1G054700_v2.0.a1
pyrus_communis	pycom16g19470
rosa_chinensis	RchiOBHm_Chr4g0396341
rosa_laevigata	RLG00000009549
rosa_multiflora	Rmu_ssc0000234.1_g000016
rosa_roxburghii	Rroxscaffold_5G00341160 Rroxscaffold_7G00160200
rosa_rugosa	Rorug03G0349900 Rorug03G0350000 Rorug03G0350100 Rorug03G0350200 Rorug03G0350300
rosa_samantha	Rh1CG210400 Rh2BG187800 Rh3BG188400 Rh4BG066500 Rh4CG073300 Rh4DG063400 Rh5BG463000 Rh5CG484900 Rh6AG475600 Rh6BG312700 Rh6CG021900 Rh6DG022000 Rh7DG258100
rosa_wichuraiana	Rw4G005470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	192
AclI	AACGTT	1 cut(s)	239
AclWI	GGATC	1 cut(s)	59
AcsI	RAATTY	1 cut(s)	169
AcvI	CACGTG	1 cut(s)	140
AfaI	GTAC	2 cut(s)	8, 36
AgsI	TTSAA	2 cut(s)	19, 89
AluBI	AGCT	1 cut(s)	149
AluI	AGCT	1 cut(s)	149
Alw21I	GWGCWC	2 cut(s)	64, 127
Alw26I	GTCTC	1 cut(s)	179
AlwI	GGATC	1 cut(s)	59
Ama87I	CYCGRG	1 cut(s)	128
AoxI	GGCC	1 cut(s)	258
ApoI	RAATTY	1 cut(s)	169
AspS9I	GGNCC	1 cut(s)	259
AvaI	CYCGRG	1 cut(s)	128
BbrPI	CACGTG	1 cut(s)	140
Bbv12I	GWGCWC	2 cut(s)	64, 127
BccI	CCATC	1 cut(s)	259
BcoDI	GTCTC	1 cut(s)	179
BfaI	CTAG	2 cut(s)	66, 302
BglII	AGATCT	1 cut(s)	304
BmeT110I	CYCGRG	1 cut(s)	128
BmgT120I	GGNCC	1 cut(s)	259
BmrI	ACTGGG	1 cut(s)	47
BmsI	GCATC	1 cut(s)	33
BmuI	ACTGGG	1 cut(s)	47
BpuEI	CTTGAG	1 cut(s)	62
BsaAI	YACGTR	1 cut(s)	140
Bse1I	ACTGG	1 cut(s)	42
BseMII	CTCAG	1 cut(s)	141
BseNI	ACTGG	1 cut(s)	42
BshFI	GGCC	1 cut(s)	260
BsiHKAI	GWGCWC	2 cut(s)	64, 127
BsiHKCI	CYCGRG	1 cut(s)	128
BsmAI	GTCTC	1 cut(s)	179
BsnI	GGCC	1 cut(s)	260
BsoBI	CYCGRG	1 cut(s)	128
Bsp1286I	GDGCHC	2 cut(s)	64, 127
Bsp143I	GATC	3 cut(s)	51, 252, 304
BspANI	GGCC	1 cut(s)	260
BspCNI	CTCAG	1 cut(s)	142
BspPI	GGATC	1 cut(s)	59
BsrI	ACTGG	1 cut(s)	42
BssMI	GATC	3 cut(s)	51, 252, 304
BstBAI	YACGTR	1 cut(s)	140
BstDEI	CTNAG	1 cut(s)	150
BstKTI	GATC	3 cut(s)	54, 255, 307
BstMAI	GTCTC	1 cut(s)	179
BstMBI	GATC	3 cut(s)	51, 252, 304
BstMWI	GCNNNNNNNGC	2 cut(s)	131, 140
BstX2I	RGATCY	1 cut(s)	304
BstYI	RGATCY	1 cut(s)	304
BsuRI	GGCC	1 cut(s)	260
Cfr13I	GGNCC	1 cut(s)	259
Csp6I	GTAC	2 cut(s)	7, 35
CviJI	RGCY	5 cut(s)	44, 134, 149, 161, 260
CviKI_1	RGCY	5 cut(s)	44, 134, 149, 161, 260
CviQI	GTAC	2 cut(s)	7, 35
DdeI	CTNAG	1 cut(s)	150
DpnI	GATC	3 cut(s)	53, 254, 306
DpnII	GATC	3 cut(s)	51, 252, 304
Eco72I	CACGTG	1 cut(s)	140
Eco88I	CYCGRG	1 cut(s)	128
EcoT22I	ATGCAT	1 cut(s)	26
FaiI	YATR	3 cut(s)	56, 58, 192
FauNDI	CATATG	1 cut(s)	56
FspBI	CTAG	2 cut(s)	66, 302
HaeIII	GGCC	1 cut(s)	260
HincII	GTYRAC	1 cut(s)	214
HindII	GTYRAC	1 cut(s)	214
HinfI	GANTC	1 cut(s)	152
Hpy166II	GTNNAC	1 cut(s)	214
Hpy188I	TCNGA	3 cut(s)	166, 229, 320
Hpy188III	TCNNGA	2 cut(s)	28, 302
Hpy8I	GTNNAC	1 cut(s)	214
HpyAV	CCTTC	1 cut(s)	25
HpyCH4IV	ACGT	2 cut(s)	139, 239
HpyCH4V	TGCA	2 cut(s)	24, 118
HpyF10VI	GCNNNNNNNGC	2 cut(s)	131, 140
HpyF3I	CTNAG	1 cut(s)	150
HpySE526I	ACGT	2 cut(s)	139, 239
Kzo9I	GATC	3 cut(s)	51, 252, 304
LmnI	GCTCC	1 cut(s)	67
LpnPI	CCDG	5 cut(s)	13, 23, 23, 275, 278
LweI	GCATC	1 cut(s)	33
MaeI	CTAG	2 cut(s)	66, 302
MaeII	ACGT	2 cut(s)	139, 239
MaeIII	GTNAC	1 cut(s)	240
MalI	GATC	3 cut(s)	53, 254, 306
MboI	GATC	3 cut(s)	51, 252, 304
MboII	GAAGA	2 cut(s)	101, 165
MflI	RGATCY	1 cut(s)	304
MhlI	GDGCHC	2 cut(s)	64, 127
MluCI	AATT	1 cut(s)	169
MlyI	GAGTC	1 cut(s)	161
MnlI	CCTC	1 cut(s)	124
Mph1103I	ATGCAT	1 cut(s)	26
MwoI	GCNNNNNNNGC	2 cut(s)	131, 140
NdeI	CATATG	1 cut(s)	56
NdeII	GATC	3 cut(s)	51, 252, 304
NsiI	ATGCAT	1 cut(s)	26
PaeR7I	CTCGAG	1 cut(s)	128
PleI	GAGTC	1 cut(s)	160
PmaCI	CACGTG	1 cut(s)	140
PmlI	CACGTG	1 cut(s)	140
PpsI	GAGTC	1 cut(s)	160
Ppu21I	YACGTR	1 cut(s)	140
PsiI	TTATAA	1 cut(s)	192
Psp1406I	AACGTT	1 cut(s)	239
PspCI	CACGTG	1 cut(s)	140
PspPI	GGNCC	1 cut(s)	259
PspXI	VCTCGAGB	1 cut(s)	128
PsuI	RGATCY	1 cut(s)	304
RsaI	GTAC	2 cut(s)	8, 36
RsaNI	GTAC	2 cut(s)	7, 35
Sau3AI	GATC	3 cut(s)	51, 252, 304
Sau96I	GGNCC	1 cut(s)	259
SchI	GAGTC	1 cut(s)	161
SduI	GDGCHC	2 cut(s)	64, 127
SetI	ASST	5 cut(s)	12, 36, 142, 151, 242
SfaNI	GCATC	1 cut(s)	33
Sfr274I	CTCGAG	1 cut(s)	128
SlaI	CTCGAG	1 cut(s)	128
SmlI	CTYRAG	2 cut(s)	77, 128
SmoI	CTYRAG	2 cut(s)	77, 128
Sse9I	AATT	1 cut(s)	169
SspMI	CTAG	2 cut(s)	66, 302
TaiI	ACGT	2 cut(s)	142, 242
TaqI	TCGA	1 cut(s)	129
TasI	AATT	1 cut(s)	169
TspDTI	ATGAA	1 cut(s)	17
XapI	RAATTY	1 cut(s)	169
XbaI	TCTAGA	1 cut(s)	301
XhoI	CTCGAG	1 cut(s)	128
XspI	CTAG	2 cut(s)	66, 302
Zsp2I	ATGCAT	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.