Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0003761

Physical Location & Seq

Genomic Coordinates Forward (+)

1935407 .. 1936052

Gene Structure 646 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG022000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGGCAGCTAGCCCACTCGACTCAACCCTCACTGCCTCAACTATCTCCAGTTCCAACCCTCCTCCGATTACGACGTCGTCGGCCCCGCCGTCTCCAAATTTAAAGTCGGCGATGCTGTTTGCTCCGCCATCGGTTCTCAAACCTCAGTTTGCAATACCACTTCGGTCAGTTGAGATTACCGCCGATATTTTTAAGGTGAGAGAATATTTGGCAGATGGGTTTTTGGTGGATAAGTTGCTGGATAAGACGGGGATGAAGGGCACCGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005911 GO:0006081 GO:0006098 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008114 GO:0008150 GO:0008152 GO:0009051 GO:0009117 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009750 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0019362 GO:0019637 GO:0019682 GO:0019693 GO:0030054 GO:0033993 GO:0034284 GO:0034285 GO:0034641 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046496 GO:0046686 GO:0050896 GO:0051156 GO:0051186 GO:0055044 GO:0055086 GO:0055114 GO:0071704 GO:0072524 GO:0097305 GO:1901135 GO:1901360 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00030 ko00480 ko01100 ko01110 ko01120 ko01130 ko01200 map00030 map00480 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

6PGD NAD_binding_2

Protein Analysis

89

Amino Acids

9.32

Weight (kDa)

8.06

Isoelectric Point (pI)

41.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003761)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23980
fragaria_vesca	FvH4_4g05311 FvH4_4g05311 FvH4_4g05311 FvH4_4g05311
malus_domestica	MD13G1227500.v1.1 MD16G1232700.v1.1
prunus_persica	Prupe.1G054700_v2.0.a1 Prupe.1G054700_v2.0.a1
pyrus_communis	pycom16g19470
rosa_chinensis	RchiOBHm_Chr4g0396341
rosa_laevigata	RLG00000009549
rosa_multiflora	Rmu_ssc0000234.1_g000016
rosa_roxburghii	Rroxscaffold_5G00341160 Rroxscaffold_7G00160200
rosa_rugosa	Rorug03G0349900 Rorug03G0350000 Rorug03G0350100 Rorug03G0350200 Rorug03G0350300
rosa_samantha	Rh1CG210400 Rh2BG187800 Rh3BG188400 Rh4BG066500 Rh4CG073300 Rh4DG063400 Rh5BG463000 Rh5CG484900 Rh6AG475600 Rh6BG312700 Rh6CG021900 Rh6DG022000 Rh7DG258100
rosa_wichuraiana	Rw4G005470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	77
AccB1I	GGYRCC	1 cut(s)	260
AciI	CCGC	3 cut(s)	86, 125, 180
AcsI	RAATTY	1 cut(s)	97
AcyI	GRCGYC	1 cut(s)	74
AluBI	AGCT	1 cut(s)	8
AluI	AGCT	1 cut(s)	8
Alw26I	GTCTC	1 cut(s)	96
AoxI	GGCC	1 cut(s)	81
ApeKI	GCWGC	1 cut(s)	5
ApoI	RAATTY	1 cut(s)	97
ArsI	GACNNNNNNTTYG	2 cut(s)	89, 121
AspS9I	GGNCC	1 cut(s)	82
AsuC2I	CCSGG	1 cut(s)	265
AsuHPI	GGTGA	1 cut(s)	208
AsuNHI	GCTAGC	1 cut(s)	8
BaeGI	GKGCMC	1 cut(s)	263
BanI	GGYRCC	1 cut(s)	260
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	2 cut(s)	136, 209
BceAI	ACGGC	1 cut(s)	73
BcnI	CCSGG	1 cut(s)	265
BcoDI	GTCTC	1 cut(s)	96
BfaI	CTAG	1 cut(s)	9
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
Bme1390I	CCNGG	1 cut(s)	265
BmgT120I	GGNCC	1 cut(s)	82
BmiI	GGNNCC	2 cut(s)	84, 262
BmrFI	CCNGG	1 cut(s)	265
BmsI	GCATC	1 cut(s)	102
BmtI	GCTAGC	1 cut(s)	12
BpmI	CTGGAG	1 cut(s)	31
BpuMI	CCSGG	1 cut(s)	265
BsaHI	GRCGYC	1 cut(s)	74
Bse1I	ACTGG	1 cut(s)	48
BseGI	GGATG	1 cut(s)	258
BseMII	CTCAG	1 cut(s)	158
BseNI	ACTGG	1 cut(s)	48
BseRI	GAGGAG	1 cut(s)	51
BseSI	GKGCMC	1 cut(s)	263
BseXI	GCAGC	1 cut(s)	17
BshFI	GGCC	1 cut(s)	83
BshNI	GGYRCC	1 cut(s)	260
BsiSI	CCGG	1 cut(s)	264
BsmAI	GTCTC	1 cut(s)	96
BsmBI	CGTCTC	1 cut(s)	96
BsnI	GGCC	1 cut(s)	83
Bsp1286I	GDGCHC	1 cut(s)	263
BspACI	CCGC	3 cut(s)	86, 125, 180
BspANI	GGCC	1 cut(s)	83
BspCNI	CTCAG	1 cut(s)	157
BspLI	GGNNCC	2 cut(s)	84, 262
BspOI	GCTAGC	1 cut(s)	12
BspT107I	GGYRCC	1 cut(s)	260
BsrI	ACTGG	1 cut(s)	48
BssNI	GRCGYC	1 cut(s)	74
BstACI	GRCGYC	1 cut(s)	74
BstC8I	GCNNGC	1 cut(s)	10
BstDEI	CTNAG	1 cut(s)	144
BstF5I	GGATG	1 cut(s)	258
BstMAI	GTCTC	1 cut(s)	96
BstSCI	CCNGG	1 cut(s)	263
BstSLI	GKGCMC	1 cut(s)	263
BstV1I	GCAGC	1 cut(s)	17
BsuRI	GGCC	1 cut(s)	83
BtgZI	GCGATG	1 cut(s)	125
BtsCI	GGATG	1 cut(s)	258
BtsI	GCAGTG	1 cut(s)	30
BtsIMutI	CAGTG	1 cut(s)	30
Cac8I	GCNNGC	1 cut(s)	10
Cfr13I	GGNCC	1 cut(s)	82
CviJI	RGCY	3 cut(s)	8, 12, 83
CviKI_1	RGCY	3 cut(s)	8, 12, 83
DdeI	CTNAG	1 cut(s)	144
DraI	TTTAAA	1 cut(s)	102
EciI	GGCGGA	1 cut(s)	114
Esp3I	CGTCTC	1 cut(s)	96
FauI	CCCGC	1 cut(s)	93
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	1 cut(s)	265
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	1 cut(s)	9
GluI	GCNGC	1 cut(s)	6
GsuI	CTGGAG	1 cut(s)	31
HaeIII	GGCC	1 cut(s)	83
HapII	CCGG	1 cut(s)	264
Hin1I	GRCGYC	1 cut(s)	74
HinfI	GANTC	1 cut(s)	20
HpaII	CCGG	1 cut(s)	264
HphI	GGTGA	1 cut(s)	208
Hpy188I	TCNGA	1 cut(s)	66
Hpy99I	CGWCG	3 cut(s)	76, 79, 82
HpyAV	CCTTC	1 cut(s)	250
HpyCH4IV	ACGT	1 cut(s)	74
HpyCH4V	TGCA	1 cut(s)	152
HpyF3I	CTNAG	1 cut(s)	144
HpySE526I	ACGT	1 cut(s)	74
Hsp92I	GRCGYC	1 cut(s)	74
LmnI	GCTCC	1 cut(s)	127
LpnPI	CCDG	2 cut(s)	61, 224
Lsp1109I	GCAGC	1 cut(s)	17
LweI	GCATC	1 cut(s)	102
MaeI	CTAG	1 cut(s)	9
MaeII	ACGT	1 cut(s)	74
MhlI	GDGCHC	1 cut(s)	263
MluCI	AATT	1 cut(s)	97
MlyI	GAGTC	1 cut(s)	14
MmeI	TCCRAC	1 cut(s)	78
MnlI	CCTC	5 cut(s)	38, 46, 69, 72, 153
MseI	TTAA	2 cut(s)	101, 192
MspI	CCGG	1 cut(s)	264
MspR9I	CCNGG	1 cut(s)	265
NciI	CCSGG	1 cut(s)	265
NheI	GCTAGC	1 cut(s)	8
NlaIV	GGNNCC	2 cut(s)	84, 262
PcsI	WCGNNNNNNNCGW	1 cut(s)	86
PflFI	GACNNNGTC	1 cut(s)	76
PkrI	GCNGC	1 cut(s)	7
PleI	GAGTC	1 cut(s)	14
PpsI	GAGTC	1 cut(s)	14
PspN4I	GGNNCC	2 cut(s)	84, 262
PspPI	GGNCC	1 cut(s)	82
PsyI	GACNNNGTC	1 cut(s)	76
SaqAI	TTAA	2 cut(s)	101, 192
SatI	GCNGC	1 cut(s)	6
Sau96I	GGNCC	1 cut(s)	82
SchI	GAGTC	1 cut(s)	14
ScrFI	CCNGG	1 cut(s)	265
SduI	GDGCHC	1 cut(s)	263
SetI	ASST	4 cut(s)	10, 77, 145, 198
SfaNI	GCATC	1 cut(s)	102
SgeI	CNNG	6 cut(s)	21, 29, 60, 97, 251, 261
Sse9I	AATT	1 cut(s)	97
SsiI	CCGC	3 cut(s)	86, 125, 180
SspI	AATATT	1 cut(s)	206
SspMI	CTAG	1 cut(s)	9
StyD4I	CCNGG	1 cut(s)	263
TaiI	ACGT	1 cut(s)	77
TaqI	TCGA	1 cut(s)	18
TaqII	GACCGA	1 cut(s)	153
TasI	AATT	1 cut(s)	97
Tru1I	TTAA	2 cut(s)	101, 192
Tru9I	TTAA	2 cut(s)	101, 192
TscAI	CASTG	1 cut(s)	37
TseI	GCWGC	1 cut(s)	5
TspDTI	ATGAA	1 cut(s)	269
TspRI	CASTG	1 cut(s)	37
Tth111I	GACNNNGTC	1 cut(s)	76
XapI	RAATTY	1 cut(s)	97
XspI	CTAG	1 cut(s)	9
ZraI	GACGTC	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.