Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0003761

Physical Location & Seq

Genomic Coordinates Forward (+)

3190221 .. 3191352

Gene Structure 1132 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00160200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGCGGCTTGCTCGGCTTTCGGACTCCACTAAATCAAGATCTCCGATTCGACTAGTACGGTGCTTGCTGAAGCACATCCTCCACAACCGAAAACATCGAAAGCGCCCCTCCGTCGCCGCCATAGCTCCCAACAACTACAATTCCTCACTCTTCTTCTACTGCGGTAGGAAATCAAATCCAAACTCTCTCATGCCGGGGGTCCCGCCAAGCGTACTCCAACATTCGGGATATTCTCCACAAGGTCGCCGCCCGAGTGGACAACGGGCCATGAGTGGCAAGGGCGGGTCCGCATTGTGGGTTCTTTTTCTTGGAGCTTGGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

107

Amino Acids

11.9

Weight (kDa)

11.87

Isoelectric Point (pI)

75.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003761)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23980
fragaria_vesca	FvH4_4g05311 FvH4_4g05311 FvH4_4g05311 FvH4_4g05311
malus_domestica	MD13G1227500.v1.1 MD16G1232700.v1.1
prunus_persica	Prupe.1G054700_v2.0.a1 Prupe.1G054700_v2.0.a1
pyrus_communis	pycom16g19470
rosa_chinensis	RchiOBHm_Chr4g0396341
rosa_laevigata	RLG00000009549
rosa_multiflora	Rmu_ssc0000234.1_g000016
rosa_roxburghii	Rroxscaffold_5G00341160 Rroxscaffold_7G00160200
rosa_rugosa	Rorug03G0349900 Rorug03G0350000 Rorug03G0350100 Rorug03G0350200 Rorug03G0350300
rosa_samantha	Rh1CG210400 Rh2BG187800 Rh3BG188400 Rh4BG066500 Rh4CG073300 Rh4DG063400 Rh5BG463000 Rh5CG484900 Rh6AG475600 Rh6BG312700 Rh6CG021900 Rh6DG022000 Rh7DG258100
rosa_wichuraiana	Rw4G005470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	7 cut(s)	4, 117, 162, 203, 247, 282, 288
AcuI	CTGAAG	1 cut(s)	89
AfaI	GTAC	2 cut(s)	57, 213
AfiI	CCNNNNNNNGG	2 cut(s)	223, 294
AhlI	ACTAGT	1 cut(s)	52
AluBI	AGCT	2 cut(s)	125, 314
AluI	AGCT	2 cut(s)	125, 314
Ama87I	CYCGRG	1 cut(s)	250
AoxI	GGCC	1 cut(s)	264
AspLEI	GCGC	1 cut(s)	105
AspS9I	GGNCC	3 cut(s)	199, 264, 285
AsuC2I	CCSGG	1 cut(s)	195
AvaI	CYCGRG	1 cut(s)	250
AvaII	GGWCC	2 cut(s)	199, 285
BcnI	CCSGG	1 cut(s)	195
BcuI	ACTAGT	1 cut(s)	52
BfaI	CTAG	1 cut(s)	53
BfoI	RGCGCY	1 cut(s)	106
BglII	AGATCT	1 cut(s)	38
BisI	GCNGC	3 cut(s)	5, 117, 247
BlsI	GCNGC	3 cut(s)	6, 118, 248
Bme1390I	CCNGG	1 cut(s)	195
Bme18I	GGWCC	2 cut(s)	199, 285
BmeT110I	CYCGRG	1 cut(s)	250
BmgT120I	GGNCC	3 cut(s)	199, 264, 285
BmiI	GGNNCC	3 cut(s)	200, 201, 286
BmrFI	CCNGG	1 cut(s)	195
BpuMI	CCSGG	1 cut(s)	195
BsaJI	CCNNGG	1 cut(s)	194
Bsc4I	CCNNNNNNNGG	2 cut(s)	223, 294
BseDI	CCNNGG	1 cut(s)	194
BseGI	GGATG	1 cut(s)	75
BseLI	CCNNNNNNNGG	2 cut(s)	223, 294
BshFI	GGCC	1 cut(s)	266
BsiHKCI	CYCGRG	1 cut(s)	250
BsiSI	CCGG	1 cut(s)	194
BslFI	GGGAC	1 cut(s)	185
BslI	CCNNNNNNNGG	2 cut(s)	223, 294
BsmFI	GGGAC	1 cut(s)	185
BsnI	GGCC	1 cut(s)	266
BsoBI	CYCGRG	1 cut(s)	250
Bsp143I	GATC	1 cut(s)	38
BspACI	CCGC	7 cut(s)	4, 117, 162, 203, 247, 282, 288
BspANI	GGCC	1 cut(s)	266
BspLI	GGNNCC	3 cut(s)	200, 201, 286
BssECI	CCNNGG	1 cut(s)	194
BssMI	GATC	1 cut(s)	38
Bst4CI	ACNGT	1 cut(s)	60
Bst6I	CTCTTC	1 cut(s)	155
BstC8I	GCNNGC	2 cut(s)	9, 65
BstF5I	GGATG	1 cut(s)	75
BstH2I	RGCGCY	1 cut(s)	106
BstHHI	GCGC	1 cut(s)	105
BstKTI	GATC	1 cut(s)	41
BstMBI	GATC	1 cut(s)	38
BstMWI	GCNNNNNNNGC	2 cut(s)	13, 122
BstSCI	CCNGG	1 cut(s)	193
BstX2I	RGATCY	1 cut(s)	38
BstYI	RGATCY	1 cut(s)	38
BsuRI	GGCC	1 cut(s)	266
BtsCI	GGATG	1 cut(s)	75
Cac8I	GCNNGC	2 cut(s)	9, 65
CfoI	GCGC	1 cut(s)	105
Cfr13I	GGNCC	3 cut(s)	199, 264, 285
Csp6I	GTAC	2 cut(s)	56, 212
CviAII	CATG	2 cut(s)	190, 268
CviJI	RGCY	5 cut(s)	7, 16, 125, 266, 314
CviKI_1	RGCY	5 cut(s)	7, 16, 125, 266, 314
CviQI	GTAC	2 cut(s)	56, 212
DpnI	GATC	1 cut(s)	40
DpnII	GATC	1 cut(s)	38
Eam1104I	CTCTTC	1 cut(s)	155
EarI	CTCTTC	1 cut(s)	155
Eco47I	GGWCC	2 cut(s)	199, 285
Eco57I	CTGAAG	1 cut(s)	89
Eco88I	CYCGRG	1 cut(s)	250
EcoO109I	RGGNCCY	1 cut(s)	199
FaeI	CATG	2 cut(s)	193, 271
FaiI	YATR	3 cut(s)	122, 191, 269
FaqI	GGGAC	1 cut(s)	185
FatI	CATG	2 cut(s)	189, 267
FauI	CCCGC	2 cut(s)	210, 275
Fnu4HI	GCNGC	3 cut(s)	5, 117, 247
FokI	GGATG	1 cut(s)	62
Fsp4HI	GCNGC	3 cut(s)	5, 117, 247
FspBI	CTAG	1 cut(s)	53
GlaI	GCGC	1 cut(s)	104
GluI	GCNGC	3 cut(s)	5, 117, 247
HaeII	RGCGCY	1 cut(s)	106
HaeIII	GGCC	1 cut(s)	266
HapII	CCGG	1 cut(s)	194
HhaI	GCGC	1 cut(s)	105
Hin1II	CATG	2 cut(s)	193, 271
Hin6I	GCGC	1 cut(s)	103
HinP1I	GCGC	1 cut(s)	103
HinfI	GANTC	2 cut(s)	23, 46
HpaII	CCGG	1 cut(s)	194
Hpy166II	GTNNAC	1 cut(s)	257
Hpy188I	TCNGA	2 cut(s)	22, 45
Hpy188III	TCNNGA	2 cut(s)	36, 225
Hpy8I	GTNNAC	1 cut(s)	257
Hpy99I	CGWCG	1 cut(s)	116
HpyCH4III	ACNGT	1 cut(s)	60
HpyF10VI	GCNNNNNNNGC	2 cut(s)	13, 122
Hsp92II	CATG	2 cut(s)	193, 271
HspAI	GCGC	1 cut(s)	103
KflI	GGGWCCC	1 cut(s)	199
Kzo9I	GATC	1 cut(s)	38
LmnI	GCTCC	2 cut(s)	130, 311
LpnPI	CCDG	1 cut(s)	207
MaeI	CTAG	1 cut(s)	53
MalI	GATC	1 cut(s)	40
MboI	GATC	1 cut(s)	38
MboII	GAAGA	2 cut(s)	142, 145
MflI	RGATCY	1 cut(s)	38
MluCI	AATT	2 cut(s)	139, 319
MlyI	GAGTC	1 cut(s)	17
MmeI	TCCRAC	1 cut(s)	241
MnlI	CCTC	3 cut(s)	89, 118, 154
MspI	CCGG	1 cut(s)	194
MspR9I	CCNGG	1 cut(s)	195
MwoI	GCNNNNNNNGC	2 cut(s)	13, 122
NciI	CCSGG	1 cut(s)	195
NdeII	GATC	1 cut(s)	38
NlaIII	CATG	2 cut(s)	193, 271
NlaIV	GGNNCC	3 cut(s)	200, 201, 286
PfeI	GAWTC	1 cut(s)	46
PkrI	GCNGC	3 cut(s)	6, 118, 248
PleI	GAGTC	1 cut(s)	17
PpsI	GAGTC	1 cut(s)	17
PpuMI	RGGWCCY	1 cut(s)	199
Psp5II	RGGWCCY	1 cut(s)	199
PspN4I	GGNNCC	3 cut(s)	200, 201, 286
PspPI	GGNCC	3 cut(s)	199, 264, 285
PspPPI	RGGWCCY	1 cut(s)	199
PsuI	RGATCY	1 cut(s)	38
RsaI	GTAC	2 cut(s)	57, 213
RsaNI	GTAC	2 cut(s)	56, 212
SatI	GCNGC	3 cut(s)	5, 117, 247
Sau3AI	GATC	1 cut(s)	38
Sau96I	GGNCC	3 cut(s)	199, 264, 285
SchI	GAGTC	1 cut(s)	17
ScrFI	CCNGG	1 cut(s)	195
SetI	ASST	3 cut(s)	127, 244, 316
SinI	GGWCC	2 cut(s)	199, 285
SpeI	ACTAGT	1 cut(s)	52
Sse9I	AATT	2 cut(s)	139, 319
SsiI	CCGC	7 cut(s)	4, 117, 162, 203, 247, 282, 288
SspMI	CTAG	1 cut(s)	53
StyD4I	CCNGG	1 cut(s)	193
TaaI	ACNGT	1 cut(s)	60
TaqI	TCGA	2 cut(s)	49, 97
TasI	AATT	2 cut(s)	139, 319
TauI	GCSGC	3 cut(s)	7, 119, 249
TfiI	GAWTC	1 cut(s)	46
TspGWI	ACGGA	1 cut(s)	100
VpaK11BI	GGWCC	2 cut(s)	199, 285
XspI	CTAG	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.