Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0003761

Physical Location & Seq

Genomic Coordinates Forward (+)

67694675 .. 67695365

Gene Structure 691 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG484900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 198 bp

ATGGTGAAGGTCAGAGACGATTTGGCAGATGGGTTTTTGGTGGATAAGTTGTTGGATAAGACGAGGATGAAGGGCACTGGGAAATGGACTGAAGGAGGAGAAGGACTTGAGTGGATTGAAGGAGGAGAGGGTAGAGAAACTAAGACCACAGGTCATGCAACGGCTGAGGCAATGGTGACAAATCATGGGTGCCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005911 GO:0006081 GO:0006098 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008114 GO:0008150 GO:0008152 GO:0009051 GO:0009117 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009750 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0019362 GO:0019637 GO:0019682 GO:0019693 GO:0030054 GO:0033993 GO:0034284 GO:0034285 GO:0034641 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046496 GO:0046686 GO:0050896 GO:0051156 GO:0051186 GO:0055044 GO:0055086 GO:0055114 GO:0071704 GO:0072524 GO:0097305 GO:1901135 GO:1901360 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00030 ko00480 ko01100 ko01110 ko01120 ko01130 ko01200 map00030 map00480 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

6PGD NAD_binding_2

Protein Analysis

65

Amino Acids

7.03

Weight (kDa)

5.23

Isoelectric Point (pI)

-1.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003761)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23980
fragaria_vesca	FvH4_4g05311 FvH4_4g05311 FvH4_4g05311 FvH4_4g05311
malus_domestica	MD13G1227500.v1.1 MD16G1232700.v1.1
prunus_persica	Prupe.1G054700_v2.0.a1 Prupe.1G054700_v2.0.a1
pyrus_communis	pycom16g19470
rosa_chinensis	RchiOBHm_Chr4g0396341
rosa_laevigata	RLG00000009549
rosa_multiflora	Rmu_ssc0000234.1_g000016
rosa_roxburghii	Rroxscaffold_5G00341160 Rroxscaffold_7G00160200
rosa_rugosa	Rorug03G0349900 Rorug03G0350000 Rorug03G0350100 Rorug03G0350200 Rorug03G0350300
rosa_samantha	Rh1CG210400 Rh2BG187800 Rh3BG188400 Rh4BG066500 Rh4CG073300 Rh4DG063400 Rh5BG463000 Rh5CG484900 Rh6AG475600 Rh6BG312700 Rh6CG021900 Rh6DG022000 Rh7DG258100
rosa_wichuraiana	Rw4G005470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	189
AcuI	CTGAAG	1 cut(s)	111
AgsI	TTSAA	1 cut(s)	119
AhdI	GACNNNNNGTC	1 cut(s)	150
Alw26I	GTCTC	1 cut(s)	9
AsuHPI	GGTGA	2 cut(s)	16, 187
BaeGI	GKGCMC	2 cut(s)	77, 194
BanI	GGYRCC	1 cut(s)	189
BbvCI	CCTCAGC	1 cut(s)	165
BccI	CCATC	1 cut(s)	23
BceAI	ACGGC	1 cut(s)	177
BcoDI	GTCTC	1 cut(s)	9
BmeRI	GACNNNNNGTC	1 cut(s)	150
BmiI	GGNNCC	1 cut(s)	191
BmrI	ACTGGG	1 cut(s)	87
BmuI	ACTGGG	1 cut(s)	87
Bpu10I	CCTNAGC	1 cut(s)	165
BpuEI	CTTGAG	1 cut(s)	128
Bse1I	ACTGG	1 cut(s)	82
Bse3DI	GCAATG	1 cut(s)	177
BseGI	GGATG	1 cut(s)	72
BseMI	GCAATG	1 cut(s)	177
BseMII	CTCAG	1 cut(s)	156
BseNI	ACTGG	1 cut(s)	82
BseRI	GAGGAG	2 cut(s)	111, 138
BseSI	GKGCMC	2 cut(s)	77, 194
BshNI	GGYRCC	1 cut(s)	189
BsmAI	GTCTC	1 cut(s)	9
BsmBI	CGTCTC	1 cut(s)	9
Bsp1286I	GDGCHC	2 cut(s)	77, 194
BspCNI	CTCAG	1 cut(s)	157
BspLI	GGNNCC	1 cut(s)	191
BspT107I	GGYRCC	1 cut(s)	189
BsrDI	GCAATG	1 cut(s)	177
BsrI	ACTGG	1 cut(s)	82
BstDEI	CTNAG	2 cut(s)	141, 165
BstF5I	GGATG	1 cut(s)	72
BstMAI	GTCTC	1 cut(s)	9
BstSLI	GKGCMC	2 cut(s)	77, 194
BtsCI	GGATG	1 cut(s)	72
BtsIMutI	CAGTG	1 cut(s)	75
CviAII	CATG	2 cut(s)	155, 185
CviJI	RGCY	1 cut(s)	164
CviKI_1	RGCY	1 cut(s)	164
DdeI	CTNAG	2 cut(s)	141, 165
DriI	GACNNNNNGTC	1 cut(s)	150
Eam1105I	GACNNNNNGTC	1 cut(s)	150
Eco57I	CTGAAG	1 cut(s)	111
Esp3I	CGTCTC	1 cut(s)	9
FaeI	CATG	2 cut(s)	158, 188
FaiI	YATR	3 cut(s)	156, 186, 196
FatI	CATG	2 cut(s)	154, 184
FokI	GGATG	1 cut(s)	79
Hin1II	CATG	2 cut(s)	158, 188
HphI	GGTGA	2 cut(s)	16, 187
Hpy188I	TCNGA	1 cut(s)	14
HpyAV	CCTTC	4 cut(s)	64, 86, 95, 113
HpyCH4V	TGCA	1 cut(s)	158
HpyF3I	CTNAG	2 cut(s)	141, 165
Hsp92II	CATG	2 cut(s)	158, 188
LpnPI	CCDG	2 cut(s)	63, 135
MaeIII	GTNAC	1 cut(s)	175
MhlI	GDGCHC	2 cut(s)	77, 194
MmeI	TCCRAC	1 cut(s)	33
MnlI	CCTC	5 cut(s)	57, 89, 116, 121, 160
NlaIII	CATG	2 cut(s)	158, 188
NlaIV	GGNNCC	1 cut(s)	191
NmuCI	GTSAC	1 cut(s)	175
PspN4I	GGNNCC	1 cut(s)	191
SduI	GDGCHC	2 cut(s)	77, 194
SetI	ASST	2 cut(s)	12, 154
SgeI	CNNG	5 cut(s)	75, 90, 119, 162, 167
SmlI	CTYRAG	1 cut(s)	107
SmoI	CTYRAG	1 cut(s)	107
TscAI	CASTG	1 cut(s)	82
TseFI	GTSAC	1 cut(s)	175
Tsp45I	GTSAC	1 cut(s)	175
TspDTI	ATGAA	1 cut(s)	83
TspRI	CASTG	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.