Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0011627

Physical Location & Seq

Genomic Coordinates Forward (+)

55965737 .. 55966514

Gene Structure 778 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009658

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGACCCAAAGGCCATGAAATCGGACCTGGTCTCATCCTCGACTACGGCTCCCAATACACCTAGCTCATCACTTGCTGCATCTGATCCCTTTCCGTCTTCTACCTCACCATCTCCAGCACCAGCCCCTCAATTCCATCACCGACCTCAACTCCAGCGTCGTCATCCTCTCCATGGGCCCCACTCCGTCCACAGCAATGACTCCCCCAGCTTACCACCTGGGTTCGCCGAGTGGGTCGAGGCCTATGGCGTCTTCATCCTTAGAATCTGCTACGGGCTGCAATTGATTGTGCAGCAGCTTGGCAGGGTGGTTAGGGTTGGGGAGAAGCAGGAGTATGGCAAGATGGAGATGAGGCCTTCATGCATTGCTTTGTTGGTCTACAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003921 GO:0003922 GO:0006139 GO:0006163 GO:0006164 GO:0006177 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009167 GO:0009168 GO:0009259 GO:0009260 GO:0009987 GO:0016874 GO:0016879 GO:0016884 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0034404 GO:0034641 GO:0034654 GO:0042278 GO:0042451 GO:0042455 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0046037 GO:0046128 GO:0046129 GO:0046390 GO:0046483 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901068 GO:1901070 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00230 ko00983 ko01100 map00230 map00983 map01100

Pfam Domains

Protein Families

GATase GMP_synt_C NAD_synthase

Protein Analysis

129

Amino Acids

14.06

Weight (kDa)

9.1

Isoelectric Point (pI)

69.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011627)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000009658 RLG00000012960
rosa_multiflora	Rmu_sc0000613.1_g000035
rosa_roxburghii	Rroxscaffold_3G00251250
rosa_rugosa	Rorug02G0653900
rosa_samantha	Rh1BG296900 Rh1CG313100 Rh2AG328500 Rh2AG504700 Rh3BG308200 Rh4BG209000 Rh4BG262000 Rh4DG045400 Rh4DG124300 Rh5CG367300 Rh5DG414400 Rh6CG017900 Rh6CG023700 Rh6DG018900 Rh7DG292100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	378
AclWI	GGATC	1 cut(s)	80
AcyI	GRCGYC	1 cut(s)	249
AfiI	CCNNNNNNNGG	1 cut(s)	173
AjnI	CCWGG	2 cut(s)	27, 217
AluBI	AGCT	3 cut(s)	66, 210, 298
AluI	AGCT	3 cut(s)	66, 210, 298
Alw26I	GTCTC	1 cut(s)	37
AlwI	GGATC	1 cut(s)	80
AoxI	GGCC	4 cut(s)	12, 176, 240, 353
ApaI	GGGCCC	1 cut(s)	180
ApeKI	GCWGC	4 cut(s)	77, 277, 292, 295
AspS9I	GGNCC	4 cut(s)	4, 25, 176, 177
AsuHPI	GGTGA	2 cut(s)	99, 131
AvaII	GGWCC	2 cut(s)	4, 25
BaeGI	GKGCMC	1 cut(s)	180
BanII	GRGCYC	1 cut(s)	180
BbsI	GAAGAC	2 cut(s)	90, 244
BbvI	GCAGC	4 cut(s)	64, 264, 304, 307
BccI	CCATC	3 cut(s)	118, 144, 337
BceAI	ACGGC	1 cut(s)	63
BciT130I	CCWGG	2 cut(s)	29, 219
BcoDI	GTCTC	1 cut(s)	37
BfaI	CTAG	1 cut(s)	63
BfmI	CTRYAG	1 cut(s)	379
BisI	GCNGC	4 cut(s)	78, 278, 293, 296
BlsI	GCNGC	4 cut(s)	79, 279, 294, 297
Bme1390I	CCNGG	2 cut(s)	29, 219
Bme18I	GGWCC	2 cut(s)	4, 25
BmgT120I	GGNCC	4 cut(s)	4, 25, 176, 177
BmiI	GGNNCC	4 cut(s)	6, 51, 178, 179
BmrFI	CCNGG	2 cut(s)	29, 219
BmsI	GCATC	1 cut(s)	89
BpiI	GAAGAC	2 cut(s)	90, 244
BpmI	CTGGAG	2 cut(s)	99, 137
BsaHI	GRCGYC	1 cut(s)	249
BsaI	GGTCTC	1 cut(s)	37
BsaJI	CCNNGG	2 cut(s)	172, 218
BsaXI	ACNNNNNCTCC	4 cut(s)	34, 64, 135, 165
Bsc4I	CCNNNNNNNGG	1 cut(s)	173
Bse3DI	GCAATG	2 cut(s)	202, 363
BseBI	CCWGG	2 cut(s)	29, 219
BseDI	CCNNGG	2 cut(s)	172, 218
BseGI	GGATG	3 cut(s)	35, 163, 255
BseLI	CCNNNNNNNGG	1 cut(s)	173
BseMI	GCAATG	2 cut(s)	202, 363
BseSI	GKGCMC	1 cut(s)	180
BseXI	GCAGC	4 cut(s)	64, 264, 304, 307
BseYI	CCCAGC	1 cut(s)	206
BsgI	GTGCAG	1 cut(s)	311
BshFI	GGCC	4 cut(s)	14, 178, 242, 355
BslI	CCNNNNNNNGG	1 cut(s)	173
BsmAI	GTCTC	1 cut(s)	37
BsnI	GGCC	4 cut(s)	14, 178, 242, 355
Bso31I	GGTCTC	1 cut(s)	37
Bsp120I	GGGCCC	1 cut(s)	176
Bsp1286I	GDGCHC	1 cut(s)	180
Bsp143I	GATC	1 cut(s)	85
Bsp19I	CCATGG	1 cut(s)	172
BspANI	GGCC	4 cut(s)	14, 178, 242, 355
BspLI	GGNNCC	4 cut(s)	6, 51, 178, 179
BspPI	GGATC	1 cut(s)	80
BspTNI	GGTCTC	1 cut(s)	37
BsrDI	GCAATG	2 cut(s)	202, 363
BssECI	CCNNGG	2 cut(s)	172, 218
BssMI	GATC	1 cut(s)	85
BssNI	GRCGYC	1 cut(s)	249
BssT1I	CCWWGG	1 cut(s)	172
Bst2UI	CCWGG	2 cut(s)	29, 219
BstACI	GRCGYC	1 cut(s)	249
BstDEI	CTNAG	1 cut(s)	260
BstDSI	CCRYGG	1 cut(s)	172
BstF5I	GGATG	3 cut(s)	35, 163, 255
BstKTI	GATC	1 cut(s)	88
BstMAI	GTCTC	1 cut(s)	37
BstMBI	GATC	1 cut(s)	85
BstNI	CCWGG	2 cut(s)	29, 219
BstSCI	CCNGG	2 cut(s)	27, 217
BstSFI	CTRYAG	1 cut(s)	379
BstSLI	GKGCMC	1 cut(s)	180
BstV1I	GCAGC	4 cut(s)	64, 264, 304, 307
BstV2I	GAAGAC	2 cut(s)	90, 244
BsuRI	GGCC	4 cut(s)	14, 178, 242, 355
BtgI	CCRYGG	1 cut(s)	172
BtsCI	GGATG	3 cut(s)	35, 163, 255
Cfr13I	GGNCC	4 cut(s)	4, 25, 176, 177
CseI	GACGC	2 cut(s)	146, 238
CsiI	ACCWGGT	1 cut(s)	27
CviAII	CATG	3 cut(s)	16, 173, 360
DdeI	CTNAG	1 cut(s)	260
DpnI	GATC	1 cut(s)	87
DpnII	GATC	1 cut(s)	85
Eco130I	CCWWGG	1 cut(s)	172
Eco147I	AGGCCT	2 cut(s)	242, 355
Eco24I	GRGCYC	1 cut(s)	180
Eco31I	GGTCTC	1 cut(s)	37
Eco47I	GGWCC	2 cut(s)	4, 25
EcoO109I	RGGNCCY	1 cut(s)	177
EcoRII	CCWGG	2 cut(s)	27, 217
EcoT14I	CCWWGG	1 cut(s)	172
EcoT22I	ATGCAT	1 cut(s)	365
EcoT38I	GRGCYC	1 cut(s)	180
ErhI	CCWWGG	1 cut(s)	172
FaeI	CATG	3 cut(s)	19, 176, 363
FaiI	YATR	5 cut(s)	17, 174, 246, 336, 361
FatI	CATG	3 cut(s)	15, 172, 359
FblI	GTMKAC	1 cut(s)	378
Fnu4HI	GCNGC	4 cut(s)	78, 278, 293, 296
FokI	GGATG	3 cut(s)	22, 150, 242
FriOI	GRGCYC	1 cut(s)	180
Fsp4HI	GCNGC	4 cut(s)	78, 278, 293, 296
FspBI	CTAG	1 cut(s)	63
GluI	GCNGC	4 cut(s)	78, 278, 293, 296
GsaI	CCCAGC	1 cut(s)	210
GsuI	CTGGAG	2 cut(s)	99, 137
HaeIII	GGCC	4 cut(s)	14, 178, 242, 355
HgaI	GACGC	2 cut(s)	146, 238
Hin1I	GRCGYC	1 cut(s)	249
Hin1II	CATG	3 cut(s)	19, 176, 363
HinfI	GANTC	2 cut(s)	200, 264
HphI	GGTGA	2 cut(s)	99, 131
Hpy166II	GTNNAC	2 cut(s)	190, 379
Hpy188I	TCNGA	2 cut(s)	25, 85
Hpy8I	GTNNAC	2 cut(s)	190, 379
Hpy99I	CGWCG	1 cut(s)	162
HpyAV	CCTTC	1 cut(s)	366
HpyCH4V	TGCA	4 cut(s)	80, 280, 292, 363
HpyF3I	CTNAG	1 cut(s)	260
Hsp92I	GRCGYC	1 cut(s)	249
Hsp92II	CATG	3 cut(s)	19, 176, 363
Kzo9I	GATC	1 cut(s)	85
LmnI	GCTCC	1 cut(s)	55
Lsp1109I	GCAGC	4 cut(s)	64, 264, 304, 307
LweI	GCATC	1 cut(s)	89
MabI	ACCWGGT	1 cut(s)	27
MaeI	CTAG	1 cut(s)	63
MalI	GATC	1 cut(s)	87
MboI	GATC	1 cut(s)	85
MboII	GAAGA	2 cut(s)	90, 244
MfeI	CAATTG	1 cut(s)	281
MhlI	GDGCHC	1 cut(s)	180
MluCI	AATT	2 cut(s)	131, 281
MlyI	GAGTC	1 cut(s)	194
MnlI	CCTC	7 cut(s)	49, 115, 138, 156, 177, 232, 345
Mph1103I	ATGCAT	1 cut(s)	365
MslI	CAYNNNNRTG	1 cut(s)	195
MspR9I	CCNGG	2 cut(s)	29, 219
MunI	CAATTG	1 cut(s)	281
MvaI	CCWGG	2 cut(s)	29, 219
NcoI	CCATGG	1 cut(s)	172
NdeII	GATC	1 cut(s)	85
NlaIII	CATG	3 cut(s)	19, 176, 363
NlaIV	GGNNCC	4 cut(s)	6, 51, 178, 179
NmeAIII	GCCGAG	1 cut(s)	253
NsiI	ATGCAT	1 cut(s)	365
PceI	AGGCCT	2 cut(s)	242, 355
PfeI	GAWTC	1 cut(s)	264
PflFI	GACNNNGTC	1 cut(s)	29
PkrI	GCNGC	4 cut(s)	79, 279, 294, 297
PleI	GAGTC	1 cut(s)	194
PpsI	GAGTC	1 cut(s)	194
Psp6I	CCWGG	2 cut(s)	27, 217
PspFI	CCCAGC	1 cut(s)	206
PspGI	CCWGG	2 cut(s)	27, 217
PspN4I	GGNNCC	4 cut(s)	6, 51, 178, 179
PspOMI	GGGCCC	1 cut(s)	176
PspPI	GGNCC	4 cut(s)	4, 25, 176, 177
PsyI	GACNNNGTC	1 cut(s)	29
RseI	CAYNNNNRTG	1 cut(s)	195
SatI	GCNGC	4 cut(s)	78, 278, 293, 296
Sau3AI	GATC	1 cut(s)	85
Sau96I	GGNCC	4 cut(s)	4, 25, 176, 177
SchI	GAGTC	1 cut(s)	194
ScrFI	CCNGG	2 cut(s)	29, 219
SduI	GDGCHC	1 cut(s)	180
SetI	ASST	8 cut(s)	30, 64, 68, 107, 148, 212, 220, 300
SexAI	ACCWGGT	1 cut(s)	27
SfaNI	GCATC	1 cut(s)	89
SfcI	CTRYAG	1 cut(s)	379
SinI	GGWCC	2 cut(s)	4, 25
SmiMI	CAYNNNNRTG	1 cut(s)	195
Sse9I	AATT	2 cut(s)	131, 281
SseBI	AGGCCT	2 cut(s)	242, 355
SspMI	CTAG	1 cut(s)	63
StuI	AGGCCT	2 cut(s)	242, 355
StyD4I	CCNGG	2 cut(s)	27, 217
StyI	CCWWGG	1 cut(s)	172
TaqI	TCGA	2 cut(s)	41, 237
TasI	AATT	2 cut(s)	131, 281
TfiI	GAWTC	1 cut(s)	264
TseI	GCWGC	4 cut(s)	77, 277, 292, 295
TspDTI	ATGAA	3 cut(s)	32, 244, 348
TspGWI	ACGGA	2 cut(s)	84, 175
Tth111I	GACNNNGTC	1 cut(s)	29
VpaK11BI	GGWCC	2 cut(s)	4, 25
XmiI	GTMKAC	1 cut(s)	378
XspI	CTAG	1 cut(s)	63
Zsp2I	ATGCAT	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.