Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0011627

Physical Location & Seq

Genomic Coordinates Reverse (-)

65872815 .. 65873433

Gene Structure 619 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG414400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGGGCTGCAGTACCACCCTGAGAGCCAATGCTTTGCTCACCTTCGCAGTCACAATTCTCGCCCTCATGTGCGCCATGACCTCCATGTCTGACAATTTCAACACCCCATCTCCCACTTCTCAAGTCCAGGTGCTGAATATCAATTGGTTTCAGAAGCAACCAAATGGGAACGACGAGGTTAAATGGGTTTTCGATTTTGATTGGTTTAGTCTCATCAAGTTATTAGTTGTCTGTTCTGAATTGAGTTTAAAGGTTGAAACTTTGAGGTTTATTATCTATGGGAATGGTGGTTTTGGGTTCCAAAACCACCACTCTATGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005787 GO:0005789 GO:0006465 GO:0006508 GO:0006518 GO:0006605 GO:0006807 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008152 GO:0008233 GO:0009987 GO:0010467 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016485 GO:0016787 GO:0019538 GO:0030312 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0034641 GO:0042175 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045047 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051604 GO:0051641 GO:0051649 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0071944 GO:0072594 GO:0072599 GO:0098796 GO:0098827 GO:0140096 GO:1901564 GO:1902494 GO:1905368

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

SPC22

Protein Analysis

107

Amino Acids

12.09

Weight (kDa)

6.01

Isoelectric Point (pI)

25.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPC22	PF04573	4 - 67	5e-08	Signal peptidase subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0011627)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000009658 RLG00000012960
rosa_multiflora	Rmu_sc0000613.1_g000035
rosa_roxburghii	Rroxscaffold_3G00251250
rosa_rugosa	Rorug02G0653900
rosa_samantha	Rh1BG296900 Rh1CG313100 Rh2AG328500 Rh2AG504700 Rh3BG308200 Rh4BG209000 Rh4BG262000 Rh4DG045400 Rh4DG124300 Rh5CG367300 Rh5DG414400 Rh6CG017900 Rh6CG023700 Rh6DG018900 Rh7DG292100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	85
AfaI	GTAC	1 cut(s)	13
AgsI	TTSAA	2 cut(s)	100, 257
AjnI	CCWGG	1 cut(s)	126
Alw26I	GTCTC	1 cut(s)	215
AlwNI	CAGNNNCTG	1 cut(s)	133
ApeKI	GCWGC	1 cut(s)	6
AspLEI	GCGC	1 cut(s)	74
AsuHPI	GGTGA	1 cut(s)	31
BccI	CCATC	1 cut(s)	115
BciT130I	CCWGG	1 cut(s)	128
BcoDI	GTCTC	1 cut(s)	215
BfmI	CTRYAG	1 cut(s)	7
BisI	GCNGC	1 cut(s)	7
BlsI	GCNGC	1 cut(s)	8
Bme1390I	CCNGG	1 cut(s)	128
BmiI	GGNNCC	1 cut(s)	299
BmrFI	CCNGG	1 cut(s)	128
BpuEI	CTTGAG	1 cut(s)	105
BsaXI	ACNNNNNCTCC	2 cut(s)	94, 124
BseBI	CCWGG	1 cut(s)	128
BseMII	CTCAG	1 cut(s)	11
BsmAI	GTCTC	1 cut(s)	215
BspCNI	CTCAG	1 cut(s)	12
BspLI	GGNNCC	1 cut(s)	299
BspMAI	CTGCAG	1 cut(s)	11
Bst2UI	CCWGG	1 cut(s)	128
BstDEI	CTNAG	1 cut(s)	20
BstHHI	GCGC	1 cut(s)	74
BstMAI	GTCTC	1 cut(s)	215
BstNI	CCWGG	1 cut(s)	128
BstSCI	CCNGG	1 cut(s)	126
BstSFI	CTRYAG	1 cut(s)	7
CaiI	CAGNNNCTG	1 cut(s)	133
CfoI	GCGC	1 cut(s)	74
Csp6I	GTAC	1 cut(s)	12
CviAII	CATG	3 cut(s)	67, 76, 85
CviJI	RGCY	2 cut(s)	6, 26
CviKI_1	RGCY	2 cut(s)	6, 26
CviQI	GTAC	1 cut(s)	12
DdeI	CTNAG	1 cut(s)	20
DraI	TTTAAA	1 cut(s)	249
DrdI	GACNNNNNNGTC	1 cut(s)	85
DseDI	GACNNNNNNGTC	1 cut(s)	85
EcoRII	CCWGG	1 cut(s)	126
FaeI	CATG	3 cut(s)	70, 79, 88
FaiI	YATR	5 cut(s)	68, 77, 86, 279, 317
FatI	CATG	3 cut(s)	66, 75, 84
Fnu4HI	GCNGC	1 cut(s)	7
Fsp4HI	GCNGC	1 cut(s)	7
GlaI	GCGC	1 cut(s)	73
GluI	GCNGC	1 cut(s)	7
HhaI	GCGC	1 cut(s)	74
Hin1II	CATG	3 cut(s)	70, 79, 88
Hin6I	GCGC	1 cut(s)	72
HinP1I	GCGC	1 cut(s)	72
HphI	GGTGA	1 cut(s)	31
Hpy188I	TCNGA	3 cut(s)	91, 153, 238
Hpy99I	CGWCG	1 cut(s)	176
HpyAV	CCTTC	1 cut(s)	52
HpyCH4V	TGCA	1 cut(s)	9
HpyF3I	CTNAG	1 cut(s)	20
Hsp92II	CATG	3 cut(s)	70, 79, 88
HspAI	GCGC	1 cut(s)	72
LpnPI	CCDG	3 cut(s)	32, 113, 140
MaeIII	GTNAC	1 cut(s)	49
MfeI	CAATTG	1 cut(s)	142
MluCI	AATT	4 cut(s)	54, 94, 142, 239
MnlI	CCTC	4 cut(s)	74, 91, 169, 258
MseI	TTAA	3 cut(s)	180, 248, 322
MspR9I	CCNGG	1 cut(s)	128
MunI	CAATTG	1 cut(s)	142
MvaI	CCWGG	1 cut(s)	128
NlaIII	CATG	3 cut(s)	70, 79, 88
NlaIV	GGNNCC	1 cut(s)	299
NmuCI	GTSAC	1 cut(s)	49
PkrI	GCNGC	1 cut(s)	8
Psp6I	CCWGG	1 cut(s)	126
PspGI	CCWGG	1 cut(s)	126
PspN4I	GGNNCC	1 cut(s)	299
PstI	CTGCAG	1 cut(s)	11
PstNI	CAGNNNCTG	1 cut(s)	133
RsaI	GTAC	1 cut(s)	13
RsaNI	GTAC	1 cut(s)	12
SaqAI	TTAA	3 cut(s)	180, 248, 322
SatI	GCNGC	1 cut(s)	7
ScrFI	CCNGG	1 cut(s)	128
SetI	ASST	6 cut(s)	44, 83, 132, 180, 255, 269
SfcI	CTRYAG	1 cut(s)	7
SmlI	CTYRAG	1 cut(s)	120
SmoI	CTYRAG	1 cut(s)	120
Sse9I	AATT	4 cut(s)	54, 94, 142, 239
StyD4I	CCNGG	1 cut(s)	126
TaqI	TCGA	1 cut(s)	192
TasI	AATT	4 cut(s)	54, 94, 142, 239
Tru1I	TTAA	3 cut(s)	180, 248, 322
Tru9I	TTAA	3 cut(s)	180, 248, 322
TseFI	GTSAC	1 cut(s)	49
TseI	GCWGC	1 cut(s)	6
Tsp45I	GTSAC	1 cut(s)	49

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.