Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0011627

Physical Location & Seq

Genomic Coordinates Forward (+)

1805523 .. 1809585

Gene Structure 4063 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG017900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 511 bp

ATGATCACTCTCATCAGTAATAGCACTAGCATACTCAGAATTGTGCTTCATGCTGTATATGGGATCATTCCTGTCATGCATATTATACGTTGCCGTTGGTGTCGGCCTCACCTTTTGTTTTTGTCTCTCACCTTCCTCCACTCTCAAATTCAGAAGCATCAGAAAGTCAGCTCTGTCTCTGTTTTCGCGATCGTCTTCTTCAGCTTACAAGGTGGTGGAAGAGGTTTTGCTGGTGTGATAGAAGGGGGAAGAAGAGGGATTGAAATCGGCAGTGTTGGAAAGTTTGAAGCTTTGATCGGTTACTTGATTTGTTTTCAGCTGCATCCCTCTGTCGATTTCAACAGCCCATGTTCCACTTCCCAAGTCGAGGTGCTAAAAATCAATTGGTTTCAGAAGCAATCAAATGGGAACGATGAGTGCGTTTCAAAAAATTCATACAAGAGACTCTTTTTTCTACGATGCCTGGCAGAACCCGCAACATCGTGCGAGTCTCCTTTCAACACAAGAACAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

SPC22

Protein Analysis

170

Amino Acids

19.04

Weight (kDa)

9.4

Isoelectric Point (pI)

52.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011627)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000009658 RLG00000012960
rosa_multiflora	Rmu_sc0000613.1_g000035
rosa_roxburghii	Rroxscaffold_3G00251250
rosa_rugosa	Rorug02G0653900
rosa_samantha	Rh1BG296900 Rh1CG313100 Rh2AG328500 Rh2AG504700 Rh3BG308200 Rh4BG209000 Rh4BG262000 Rh4DG045400 Rh4DG124300 Rh5CG367300 Rh5DG414400 Rh6CG017900 Rh6CG023700 Rh6DG018900 Rh7DG292100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	188
AciI	CCGC	1 cut(s)	474
AclWI	GGATC	1 cut(s)	71
AcsI	RAATTY	2 cut(s)	147, 430
AcuI	CTGAAG	1 cut(s)	184
AfiI	CCNNNNNNNGG	1 cut(s)	367
AgsI	TTSAA	5 cut(s)	263, 287, 340, 426, 499
AjnI	CCWGG	1 cut(s)	462
AluBI	AGCT	4 cut(s)	171, 204, 290, 319
AluI	AGCT	4 cut(s)	171, 204, 290, 319
Alw26I	GTCTC	4 cut(s)	129, 181, 436, 495
AlwI	GGATC	1 cut(s)	71
AoxI	GGCC	1 cut(s)	104
ApeKI	GCWGC	1 cut(s)	319
ApoI	RAATTY	2 cut(s)	147, 430
AsuHPI	GGTGA	2 cut(s)	101, 121
BbsI	GAAGAC	1 cut(s)	187
BbvI	GCAGC	1 cut(s)	306
BceAI	ACGGC	1 cut(s)	78
BciT130I	CCWGG	1 cut(s)	464
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	4 cut(s)	129, 181, 436, 495
BfaI	CTAG	1 cut(s)	27
BisI	GCNGC	1 cut(s)	320
BlsI	GCNGC	1 cut(s)	321
Bme1390I	CCNGG	1 cut(s)	464
BmrFI	CCNGG	1 cut(s)	464
BmsI	GCATC	3 cut(s)	166, 331, 449
BpiI	GAAGAC	1 cut(s)	187
BsaBI	GATNNNNATC	1 cut(s)	263
Bsc4I	CCNNNNNNNGG	1 cut(s)	367
Bse8I	GATNNNNATC	1 cut(s)	263
BseBI	CCWGG	1 cut(s)	464
BseGI	GGATG	1 cut(s)	322
BseJI	GATNNNNATC	1 cut(s)	263
BseLI	CCNNNNNNNGG	1 cut(s)	367
BseMII	CTCAG	1 cut(s)	49
BseXI	GCAGC	1 cut(s)	306
Bsh1236I	CGCG	1 cut(s)	188
Bsh1285I	CGRYCG	1 cut(s)	192
BshFI	GGCC	1 cut(s)	106
BsiEI	CGRYCG	1 cut(s)	192
BslI	CCNNNNNNNGG	1 cut(s)	367
BsmAI	GTCTC	4 cut(s)	129, 181, 436, 495
BsnI	GGCC	1 cut(s)	106
Bsp143I	GATC	4 cut(s)	3, 63, 189, 294
Bsp68I	TCGCGA	1 cut(s)	188
BspACI	CCGC	1 cut(s)	474
BspANI	GGCC	1 cut(s)	106
BspCNI	CTCAG	1 cut(s)	48
BspFNI	CGCG	1 cut(s)	188
BspPI	GGATC	1 cut(s)	71
BssMI	GATC	4 cut(s)	3, 63, 189, 294
Bst2UI	CCWGG	1 cut(s)	464
Bst6I	CTCTTC	2 cut(s)	214, 247
BstDEI	CTNAG	1 cut(s)	35
BstF5I	GGATG	1 cut(s)	322
BstFNI	CGCG	1 cut(s)	188
BstKTI	GATC	4 cut(s)	6, 66, 192, 297
BstMAI	GTCTC	4 cut(s)	129, 181, 436, 495
BstMBI	GATC	4 cut(s)	3, 63, 189, 294
BstMCI	CGRYCG	1 cut(s)	192
BstMWI	GCNNNNNNNGC	1 cut(s)	473
BstNI	CCWGG	1 cut(s)	464
BstSCI	CCNGG	1 cut(s)	462
BstUI	CGCG	1 cut(s)	188
BstV1I	GCAGC	1 cut(s)	306
BstV2I	GAAGAC	1 cut(s)	187
BsuRI	GGCC	1 cut(s)	106
BtsCI	GGATG	1 cut(s)	322
BtsI	GCAGTG	1 cut(s)	277
BtsIMutI	CAGTG	1 cut(s)	277
BtuMI	TCGCGA	1 cut(s)	188
CviAII	CATG	3 cut(s)	50, 76, 348
CviJI	RGCY	6 cut(s)	106, 171, 204, 290, 319, 345
CviKI_1	RGCY	6 cut(s)	106, 171, 204, 290, 319, 345
DdeI	CTNAG	1 cut(s)	35
DpnI	GATC	4 cut(s)	5, 65, 191, 296
DpnII	GATC	4 cut(s)	3, 63, 189, 294
Eam1104I	CTCTTC	2 cut(s)	214, 247
EarI	CTCTTC	2 cut(s)	214, 247
Eco57I	CTGAAG	1 cut(s)	184
EcoRII	CCWGG	1 cut(s)	462
EcoT22I	ATGCAT	1 cut(s)	81
FaeI	CATG	3 cut(s)	53, 79, 351
FaiI	YATR	9 cut(s)	32, 51, 58, 60, 77, 81, 86, 349, 436
FalI	AAGNNNNNCTT	2 cut(s)	431, 463
FatI	CATG	3 cut(s)	49, 75, 347
FauI	CCCGC	1 cut(s)	481
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	1 cut(s)	320
FokI	GGATG	1 cut(s)	309
Fsp4HI	GCNGC	1 cut(s)	320
FspBI	CTAG	1 cut(s)	27
GluI	GCNGC	1 cut(s)	320
HaeIII	GGCC	1 cut(s)	106
Hin1II	CATG	3 cut(s)	53, 79, 351
HindIII	AAGCTT	1 cut(s)	288
HinfI	GANTC	2 cut(s)	444, 488
HphI	GGTGA	2 cut(s)	101, 121
Hpy188I	TCNGA	4 cut(s)	38, 153, 162, 393
Hpy188III	TCNNGA	1 cut(s)	187
HpyAV	CCTTC	2 cut(s)	142, 236
HpyCH4IV	ACGT	1 cut(s)	88
HpyCH4V	TGCA	2 cut(s)	79, 322
HpyF10VI	GCNNNNNNNGC	1 cut(s)	473
HpyF3I	CTNAG	1 cut(s)	35
HpySE526I	ACGT	1 cut(s)	88
Hsp92II	CATG	3 cut(s)	53, 79, 351
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	4 cut(s)	3, 63, 189, 294
LpnPI	CCDG	4 cut(s)	84, 216, 449, 476
Lsp1109I	GCAGC	1 cut(s)	306
LweI	GCATC	3 cut(s)	166, 331, 449
MaeI	CTAG	1 cut(s)	27
MaeII	ACGT	1 cut(s)	88
MaeIII	GTNAC	1 cut(s)	299
MalI	GATC	4 cut(s)	5, 65, 191, 296
MboI	GATC	4 cut(s)	3, 63, 189, 294
MboII	GAAGA	5 cut(s)	187, 190, 231, 261, 264
MfeI	CAATTG	1 cut(s)	382
MluCI	AATT	4 cut(s)	39, 147, 382, 430
MlyI	GAGTC	2 cut(s)	438, 497
MmeI	TCCRAC	1 cut(s)	256
MnlI	CCTC	6 cut(s)	117, 146, 215, 248, 337, 361
Mph1103I	ATGCAT	1 cut(s)	81
MspA1I	CMGCKG	1 cut(s)	319
MspR9I	CCNGG	1 cut(s)	464
MunI	CAATTG	1 cut(s)	382
MvaI	CCWGG	1 cut(s)	464
MvnI	CGCG	1 cut(s)	188
MwoI	GCNNNNNNNGC	1 cut(s)	473
NdeII	GATC	4 cut(s)	3, 63, 189, 294
NlaIII	CATG	3 cut(s)	53, 79, 351
NruI	TCGCGA	1 cut(s)	188
NsiI	ATGCAT	1 cut(s)	81
PcsI	WCGNNNNNNNCGW	1 cut(s)	417
PkrI	GCNGC	1 cut(s)	321
Ple19I	CGATCG	1 cut(s)	192
PleI	GAGTC	2 cut(s)	438, 496
PpsI	GAGTC	2 cut(s)	438, 496
Psp6I	CCWGG	1 cut(s)	462
PspGI	CCWGG	1 cut(s)	462
PvuI	CGATCG	1 cut(s)	192
PvuII	CAGCTG	1 cut(s)	319
RruI	TCGCGA	1 cut(s)	188
SatI	GCNGC	1 cut(s)	320
Sau3AI	GATC	4 cut(s)	3, 63, 189, 294
SchI	GAGTC	2 cut(s)	438, 497
ScrFI	CCNGG	1 cut(s)	464
SfaNI	GCATC	3 cut(s)	166, 331, 449
Sse9I	AATT	4 cut(s)	39, 147, 382, 430
SsiI	CCGC	1 cut(s)	474
SspMI	CTAG	1 cut(s)	27
StyD4I	CCNGG	1 cut(s)	462
TaiI	ACGT	1 cut(s)	91
TaqI	TCGA	2 cut(s)	333, 366
TasI	AATT	4 cut(s)	39, 147, 382, 430
TscAI	CASTG	1 cut(s)	277
TseI	GCWGC	1 cut(s)	319
TspDTI	ATGAA	2 cut(s)	38, 423
TspRI	CASTG	1 cut(s)	277
XapI	RAATTY	2 cut(s)	147, 430
XspI	CTAG	1 cut(s)	27
Zsp2I	ATGCAT	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.