Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0011627

Physical Location & Seq

Genomic Coordinates Forward (+)

24333749 .. 24335871

Gene Structure 2123 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012960

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGACCATCGCTGCCATAGACCCAAAAGCCGTGAAATCAGACTTGGTCCTCATCCTCGACTATGGCTCCCATACACCCACCTCATCACTCTCCGCATTCGATCTCTCTACTCCCCACTCCGTCCGCACCGACGACTCCCCCAGCTTCCCCGCCGGGTTCACCGAGTGGGCCGAGGTCCATGGCTTCTTCGTCCTCGGAATCTGCTACGGCTTGCAGCTGATTGTGCAGAGGCTTGGCGGGGTGGTTAGGGTTGGGGAGAAGCAGGAAGCCAGCAGGGAGTGGTGGCCGCCATTGAAAGCCCTGAAAGGAGGTTCTATGGGCTGCAGTACCACCCTGAGAGCCAATGCTTTGCTCACCTTCGCAGTCACAATTCTCGCCCTCATGTGCGCCATGGCCTCCATGTCTGACAATTTCAACACCCCATCTCCCACTTCTCAAGTCCAGGTGCTGAATATCAATTGGTTTCAGAAGCAACCAAATGGGAACGACGAGAAGAACCGGCCATGTTTCACATTTCTATCAACTCGATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003921 GO:0003922 GO:0006139 GO:0006163 GO:0006164 GO:0006177 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009167 GO:0009168 GO:0009259 GO:0009260 GO:0009987 GO:0016874 GO:0016879 GO:0016884 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0034404 GO:0034641 GO:0034654 GO:0042278 GO:0042451 GO:0042455 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0046037 GO:0046128 GO:0046129 GO:0046390 GO:0046483 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901068 GO:1901070 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00230 ko00983 ko01100 map00230 map00983 map01100

Pfam Domains

Protein Families

GATase GMP_synt_C NAD_synthase

Protein Analysis

178

Amino Acids

19.31

Weight (kDa)

6.81

Isoelectric Point (pI)

32.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPC22	PF04573	109 - 164	5.6e-06	Signal peptidase subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011627)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000009658 RLG00000012960
rosa_multiflora	Rmu_sc0000613.1_g000035
rosa_roxburghii	Rroxscaffold_3G00251250
rosa_rugosa	Rorug02G0653900
rosa_samantha	Rh1BG296900 Rh1CG313100 Rh2AG328500 Rh2AG504700 Rh3BG308200 Rh4BG209000 Rh4BG262000 Rh4DG045400 Rh4DG124300 Rh5CG367300 Rh5DG414400 Rh6CG017900 Rh6CG023700 Rh6DG018900 Rh7DG292100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	93, 124, 150, 237, 287
AcoI	YGGCCR	2 cut(s)	284, 500
AdeI	CACNNNGTG	1 cut(s)	165
AfaI	GTAC	1 cut(s)	328
AgsI	TTSAA	2 cut(s)	295, 415
AjnI	CCWGG	1 cut(s)	441
AjuI	GAANNNNNNNTTGG	2 cut(s)	26, 58
AluBI	AGCT	2 cut(s)	144, 217
AluI	AGCT	2 cut(s)	144, 217
AlwNI	CAGNNNCTG	1 cut(s)	448
AoxI	GGCC	4 cut(s)	168, 284, 393, 500
ApeKI	GCWGC	3 cut(s)	11, 214, 321
AspLEI	GCGC	1 cut(s)	389
AspS9I	GGNCC	3 cut(s)	46, 168, 175
AsuC2I	CCSGG	1 cut(s)	154
AsuHPI	GGTGA	2 cut(s)	151, 346
AvaII	GGWCC	2 cut(s)	46, 175
BbvI	GCAGC	2 cut(s)	226, 308
BccI	CCATC	2 cut(s)	14, 430
BceAI	ACGGC	2 cut(s)	14, 223
BciT130I	CCWGG	1 cut(s)	443
BcnI	CCSGG	1 cut(s)	154
BfmI	CTRYAG	1 cut(s)	322
BisI	GCNGC	4 cut(s)	12, 215, 287, 322
BlsI	GCNGC	4 cut(s)	13, 216, 288, 323
Bme1390I	CCNGG	2 cut(s)	154, 443
Bme18I	GGWCC	2 cut(s)	46, 175
BmgT120I	GGNCC	3 cut(s)	46, 168, 175
BmiI	GGNNCC	1 cut(s)	67
BmrFI	CCNGG	2 cut(s)	154, 443
BpuEI	CTTGAG	1 cut(s)	420
BpuMI	CCSGG	1 cut(s)	154
BsaJI	CCNNGG	4 cut(s)	171, 178, 193, 390
BsaXI	ACNNNNNCTCC	4 cut(s)	50, 80, 409, 439
Bse118I	RCCGGY	1 cut(s)	498
BseBI	CCWGG	1 cut(s)	443
BseDI	CCNNGG	4 cut(s)	171, 178, 193, 390
BseGI	GGATG	1 cut(s)	51
BseMII	CTCAG	1 cut(s)	326
BseXI	GCAGC	2 cut(s)	226, 308
BseYI	CCCAGC	1 cut(s)	140
BsgI	GTGCAG	1 cut(s)	245
BshFI	GGCC	4 cut(s)	170, 286, 395, 502
BsiSI	CCGG	2 cut(s)	153, 499
BsmI	GAATGC	1 cut(s)	95
BsnI	GGCC	4 cut(s)	170, 286, 395, 502
Bsp143I	GATC	1 cut(s)	100
Bsp19I	CCATGG	2 cut(s)	178, 390
BspACI	CCGC	5 cut(s)	93, 124, 150, 237, 287
BspANI	GGCC	4 cut(s)	170, 286, 395, 502
BspCNI	CTCAG	1 cut(s)	327
BspLI	GGNNCC	1 cut(s)	67
BspMAI	CTGCAG	1 cut(s)	326
BsrFI	RCCGGY	1 cut(s)	498
BssAI	RCCGGY	1 cut(s)	498
BssECI	CCNNGG	4 cut(s)	171, 178, 193, 390
BssMI	GATC	1 cut(s)	100
BssT1I	CCWWGG	2 cut(s)	178, 390
Bst2UI	CCWGG	1 cut(s)	443
BstC8I	GCNNGC	2 cut(s)	212, 271
BstDEI	CTNAG	1 cut(s)	335
BstDSI	CCRYGG	2 cut(s)	178, 390
BstF5I	GGATG	1 cut(s)	51
BstHHI	GCGC	1 cut(s)	389
BstKTI	GATC	1 cut(s)	103
BstMBI	GATC	1 cut(s)	100
BstMWI	GCNNNNNNNGC	1 cut(s)	223
BstNI	CCWGG	1 cut(s)	443
BstSCI	CCNGG	2 cut(s)	152, 441
BstSFI	CTRYAG	1 cut(s)	322
BstV1I	GCAGC	2 cut(s)	226, 308
BsuRI	GGCC	4 cut(s)	170, 286, 395, 502
BtgI	CCRYGG	2 cut(s)	178, 390
BtsCI	GGATG	1 cut(s)	51
Cac8I	GCNNGC	2 cut(s)	212, 271
CaiI	CAGNNNCTG	1 cut(s)	448
CfoI	GCGC	1 cut(s)	389
Cfr10I	RCCGGY	1 cut(s)	498
Cfr13I	GGNCC	3 cut(s)	46, 168, 175
Csp6I	GTAC	1 cut(s)	327
CviAII	CATG	5 cut(s)	179, 382, 391, 400, 504
CviQI	GTAC	1 cut(s)	327
DdeI	CTNAG	1 cut(s)	335
DpnI	GATC	1 cut(s)	102
DpnII	GATC	1 cut(s)	100
DraIII	CACNNNGTG	1 cut(s)	165
EaeI	YGGCCR	2 cut(s)	284, 500
Eco130I	CCWWGG	2 cut(s)	178, 390
Eco47I	GGWCC	2 cut(s)	46, 175
EcoRII	CCWGG	1 cut(s)	441
EcoT14I	CCWWGG	2 cut(s)	178, 390
ErhI	CCWWGG	2 cut(s)	178, 390
FaeI	CATG	5 cut(s)	182, 385, 394, 403, 507
FaiI	YATR	9 cut(s)	17, 63, 72, 180, 317, 383, 392, 401, 505
FatI	CATG	5 cut(s)	178, 381, 390, 399, 503
FauI	CCCGC	2 cut(s)	157, 230
Fnu4HI	GCNGC	4 cut(s)	12, 215, 287, 322
FokI	GGATG	1 cut(s)	38
Fsp4HI	GCNGC	4 cut(s)	12, 215, 287, 322
GlaI	GCGC	1 cut(s)	388
GluI	GCNGC	4 cut(s)	12, 215, 287, 322
GsaI	CCCAGC	1 cut(s)	144
HaeIII	GGCC	4 cut(s)	170, 286, 395, 502
HapII	CCGG	2 cut(s)	153, 499
HhaI	GCGC	1 cut(s)	389
Hin1II	CATG	5 cut(s)	182, 385, 394, 403, 507
Hin6I	GCGC	1 cut(s)	387
HinP1I	GCGC	1 cut(s)	387
HinfI	GANTC	2 cut(s)	134, 198
HpaII	CCGG	2 cut(s)	153, 499
HphI	GGTGA	2 cut(s)	151, 346
Hpy166II	GTNNAC	1 cut(s)	159
Hpy188I	TCNGA	4 cut(s)	40, 197, 406, 468
Hpy8I	GTNNAC	1 cut(s)	159
Hpy99I	CGWCG	2 cut(s)	134, 491
HpyAV	CCTTC	1 cut(s)	367
HpyCH4V	TGCA	3 cut(s)	214, 226, 324
HpyF10VI	GCNNNNNNNGC	1 cut(s)	223
HpyF3I	CTNAG	1 cut(s)	335
Hsp92II	CATG	5 cut(s)	182, 385, 394, 403, 507
HspAI	GCGC	1 cut(s)	387
Kzo9I	GATC	1 cut(s)	100
LmnI	GCTCC	1 cut(s)	71
Lsp1109I	GCAGC	2 cut(s)	226, 308
MaeIII	GTNAC	1 cut(s)	364
MalI	GATC	1 cut(s)	102
MboI	GATC	1 cut(s)	100
MboII	GAAGA	2 cut(s)	178, 505
MfeI	CAATTG	1 cut(s)	457
MluCI	AATT	3 cut(s)	369, 409, 457
MlyI	GAGTC	1 cut(s)	128
MnlI	CCTC	9 cut(s)	59, 65, 91, 166, 203, 222, 302, 389, 406
MspA1I	CMGCKG	1 cut(s)	217
MspI	CCGG	2 cut(s)	153, 499
MspR9I	CCNGG	2 cut(s)	154, 443
MunI	CAATTG	1 cut(s)	457
Mva1269I	GAATGC	1 cut(s)	95
MvaI	CCWGG	1 cut(s)	443
MwoI	GCNNNNNNNGC	1 cut(s)	223
NciI	CCSGG	1 cut(s)	154
NcoI	CCATGG	2 cut(s)	178, 390
NdeII	GATC	1 cut(s)	100
NlaIII	CATG	5 cut(s)	182, 385, 394, 403, 507
NlaIV	GGNNCC	1 cut(s)	67
NmeAIII	GCCGAG	1 cut(s)	196
NmuCI	GTSAC	1 cut(s)	364
PctI	GAATGC	1 cut(s)	95
PfeI	GAWTC	1 cut(s)	198
PflFI	GACNNNGTC	1 cut(s)	44
PkrI	GCNGC	4 cut(s)	13, 216, 288, 323
PleI	GAGTC	1 cut(s)	128
PpsI	GAGTC	1 cut(s)	128
Psp6I	CCWGG	1 cut(s)	441
PspFI	CCCAGC	1 cut(s)	140
PspGI	CCWGG	1 cut(s)	441
PspN4I	GGNNCC	1 cut(s)	67
PspPI	GGNCC	3 cut(s)	46, 168, 175
PstI	CTGCAG	1 cut(s)	326
PstNI	CAGNNNCTG	1 cut(s)	448
PsyI	GACNNNGTC	1 cut(s)	44
PvuII	CAGCTG	1 cut(s)	217
RsaI	GTAC	1 cut(s)	328
RsaNI	GTAC	1 cut(s)	327
SatI	GCNGC	4 cut(s)	12, 215, 287, 322
Sau3AI	GATC	1 cut(s)	100
Sau96I	GGNCC	3 cut(s)	46, 168, 175
SchI	GAGTC	1 cut(s)	128
ScrFI	CCNGG	2 cut(s)	154, 443
SetI	ASST	7 cut(s)	83, 146, 177, 219, 313, 359, 447
SfcI	CTRYAG	1 cut(s)	322
SinI	GGWCC	2 cut(s)	46, 175
SmlI	CTYRAG	1 cut(s)	435
SmoI	CTYRAG	1 cut(s)	435
Sse9I	AATT	3 cut(s)	369, 409, 457
SsiI	CCGC	5 cut(s)	93, 124, 150, 237, 287
StyD4I	CCNGG	2 cut(s)	152, 441
StyI	CCWWGG	2 cut(s)	178, 390
TaqI	TCGA	3 cut(s)	57, 99, 526
TasI	AATT	3 cut(s)	369, 409, 457
TauI	GCSGC	1 cut(s)	289
TfiI	GAWTC	1 cut(s)	198
TseFI	GTSAC	1 cut(s)	364
TseI	GCWGC	3 cut(s)	11, 214, 321
Tsp45I	GTSAC	1 cut(s)	364
TspGWI	ACGGA	1 cut(s)	109
Tth111I	GACNNNGTC	1 cut(s)	44
VpaK11BI	GGWCC	2 cut(s)	46, 175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.