Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0011627

Physical Location & Seq

Genomic Coordinates Forward (+)

76098989 .. 76101303

Gene Structure 2315 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0653900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGAGCTTTCAAGATGTGCAGAATGGCGGAGGAGGAAAGGGAAAGAAGGCATCTGCATCTCCGTCGCAGGCGGTGGCTGCCGGCATATTCCAGATCAACACTGCCGTTGCCACTTTCCGTCGACTGGTTGATGCCATCGGAACTGTCAAGGACACTCCCGATCACCGCCAAAAGCTGCACAATACGAGGCAACGGATACTGGAGGTTGTCAAAGATACTTCTGCTAAACTCAAATCCCTAAGCGAATCTGATCGCCACAGCAATGTCAATCCCCGTAAGCAGATTGAAGATGCCAAGCTTGCAAGAGATTTTCAAACCACATTGCAAGAATTCCAGAAAGTTCAACAGCTTGCCTCTGAGCGCGAGTCTACTTACATGCCTTCCTTACCAGCAACAGCAACCTCTGCTGCCTCTGCCTCTGGGGAATATTTGGAACCAACCAGGGATGAGTACCGTCAACCTTTCATTCAGGAGCAAAAGAGACAGGAAGTAGTGCTGCTGGATAATGAGATTGGTTTTAATGAGGCAATAATTGAGGAAAGGGAACAGGGTATTAAAGATATAGAAGAACAAATTGGAGAAGCTAGTGAAATATTCAGGGACCTTGCTGTTCTTGTTCATGAGCAAGGTGTAGTCATTGATGACATTCATTCAAACATTGACAACTCTTCTGCTGCAACGACCCAAGCTAGAGTTCAGCTAGCTAAGGCTTCCAAAGGTGTTAAAACGAGATCTTCGTGGTGTTGGTGGGTGATGGCAATTGTCGTAGTGGTGATTGTAGTTGTCCTCATCATCCTTATCATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005787 GO:0005789 GO:0006465 GO:0006508 GO:0006518 GO:0006605 GO:0006807 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008152 GO:0008233 GO:0009987 GO:0010467 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016485 GO:0016787 GO:0019538 GO:0030312 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0034641 GO:0042175 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045047 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051604 GO:0051641 GO:0051649 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0071944 GO:0072594 GO:0072599 GO:0098796 GO:0098827 GO:0140096 GO:1901564 GO:1902494 GO:1905368

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

SPC22

Protein Analysis

268

Amino Acids

29.72

Weight (kDa)

5.82

Isoelectric Point (pI)

50.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Syntaxin_2	PF14523	22 - 161	1.2e-30	Syntaxin-like protein
SNARE	PF05739	212 - 263	3.7e-10	SNARE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011627)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000009658 RLG00000012960
rosa_multiflora	Rmu_sc0000613.1_g000035
rosa_roxburghii	Rroxscaffold_3G00251250
rosa_rugosa	Rorug02G0653900
rosa_samantha	Rh1BG296900 Rh1CG313100 Rh2AG328500 Rh2AG504700 Rh3BG308200 Rh4BG209000 Rh4BG262000 Rh4DG045400 Rh4DG124300 Rh5CG367300 Rh5DG414400 Rh6CG017900 Rh6CG023700 Rh6DG018900 Rh7DG292100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	121, 368
AccII	CGCG	1 cut(s)	363
AciI	CCGC	3 cut(s)	27, 71, 166
AcsI	RAATTY	1 cut(s)	329
AfaI	GTAC	1 cut(s)	452
AfiI	CCNNNNNNNGG	1 cut(s)	124
AgsI	TTSAA	5 cut(s)	11, 287, 314, 344, 654
AjnI	CCWGG	1 cut(s)	440
AjuI	GAANNNNNNNTTGG	4 cut(s)	558, 590, 678, 710
AluBI	AGCT	8 cut(s)	6, 175, 298, 349, 584, 689, 700, 704
AluI	AGCT	8 cut(s)	6, 175, 298, 349, 584, 689, 700, 704
Alw26I	GTCTC	1 cut(s)	475
ApeKI	GCWGC	5 cut(s)	77, 175, 407, 496, 674
ApoI	RAATTY	1 cut(s)	329
AspLEI	GCGC	1 cut(s)	363
AspS9I	GGNCC	1 cut(s)	601
AsuHPI	GGTGA	3 cut(s)	155, 763, 784
AsuNHI	GCTAGC	1 cut(s)	700
AvaII	GGWCC	1 cut(s)	601
BbvI	GCAGC	5 cut(s)	64, 162, 394, 483, 661
BccI	CCATC	2 cut(s)	143, 748
BceAI	ACGGC	1 cut(s)	89
BcgI	CGANNNNNNTGC	2 cut(s)	45, 79
BciT130I	CCWGG	1 cut(s)	442
BciVI	GTATCC	1 cut(s)	189
BcoDI	GTCTC	1 cut(s)	475
BfaI	CTAG	3 cut(s)	585, 690, 701
BfuI	GTATCC	1 cut(s)	189
BglII	AGATCT	1 cut(s)	731
BisI	GCNGC	5 cut(s)	78, 176, 408, 497, 675
BlsI	GCNGC	5 cut(s)	79, 177, 409, 498, 676
Bme1390I	CCNGG	1 cut(s)	442
Bme18I	GGWCC	1 cut(s)	601
BmgT120I	GGNCC	1 cut(s)	601
BmiI	GGNNCC	2 cut(s)	435, 602
BmrFI	CCNGG	1 cut(s)	442
BmsI	GCATC	4 cut(s)	59, 65, 121, 280
BmtI	GCTAGC	1 cut(s)	704
BpmI	CTGGAG	1 cut(s)	221
Bpu10I	CCTNAGC	2 cut(s)	239, 705
BsaJI	CCNNGG	1 cut(s)	441
Bsc4I	CCNNNNNNNGG	1 cut(s)	124
Bse118I	RCCGGY	1 cut(s)	80
Bse1I	ACTGG	2 cut(s)	129, 204
Bse3DI	GCAATG	2 cut(s)	268, 320
BseBI	CCWGG	1 cut(s)	442
BseDI	CCNNGG	1 cut(s)	441
BseGI	GGATG	2 cut(s)	451, 792
BseLI	CCNNNNNNNGG	1 cut(s)	124
BseMI	GCAATG	2 cut(s)	268, 320
BseMII	CTCAG	1 cut(s)	348
BseNI	ACTGG	2 cut(s)	129, 204
BseRI	GAGGAG	1 cut(s)	45
BseXI	GCAGC	5 cut(s)	64, 162, 394, 483, 661
BsgI	GTGCAG	2 cut(s)	38, 161
Bsh1236I	CGCG	1 cut(s)	363
BsiSI	CCGG	1 cut(s)	81
BslFI	GGGAC	1 cut(s)	614
BslI	CCNNNNNNNGG	1 cut(s)	124
BsmAI	GTCTC	1 cut(s)	475
BsmFI	GGGAC	1 cut(s)	614
Bsp143I	GATC	4 cut(s)	93, 160, 250, 731
BspACI	CCGC	3 cut(s)	27, 71, 166
BspCNI	CTCAG	1 cut(s)	349
BspFNI	CGCG	1 cut(s)	363
BspHI	TCATGA	1 cut(s)	619
BspLI	GGNNCC	2 cut(s)	435, 602
BspOI	GCTAGC	1 cut(s)	704
BsrDI	GCAATG	2 cut(s)	268, 320
BsrFI	RCCGGY	1 cut(s)	80
BsrI	ACTGG	2 cut(s)	129, 204
BssAI	RCCGGY	1 cut(s)	80
BssECI	CCNNGG	1 cut(s)	441
BssMI	GATC	4 cut(s)	93, 160, 250, 731
Bst2UI	CCWGG	1 cut(s)	442
Bst4CI	ACNGT	2 cut(s)	145, 455
Bst6I	CTCTTC	1 cut(s)	673
BstAPI	GCANNNNNTGC	1 cut(s)	404
BstC8I	GCNNGC	5 cut(s)	69, 82, 300, 351, 702
BstDEI	CTNAG	3 cut(s)	239, 357, 705
BstF5I	GGATG	2 cut(s)	451, 792
BstFNI	CGCG	1 cut(s)	363
BstHHI	GCGC	1 cut(s)	363
BstKTI	GATC	4 cut(s)	96, 163, 253, 734
BstMAI	GTCTC	1 cut(s)	475
BstMBI	GATC	4 cut(s)	93, 160, 250, 731
BstMWI	GCNNNNNNNGC	4 cut(s)	77, 299, 404, 413
BstNI	CCWGG	1 cut(s)	442
BstNSI	RCATGY	1 cut(s)	379
BstSCI	CCNGG	1 cut(s)	440
BstUI	CGCG	1 cut(s)	363
BstV1I	GCAGC	5 cut(s)	64, 162, 394, 483, 661
BstX2I	RGATCY	1 cut(s)	731
BstYI	RGATCY	1 cut(s)	731
BsuI	GTATCC	1 cut(s)	189
BtsCI	GGATG	2 cut(s)	451, 792
BtsI	GCAGTG	1 cut(s)	99
BtsIMutI	CAGTG	1 cut(s)	99
Cac8I	GCNNGC	5 cut(s)	69, 82, 300, 351, 702
CciI	TCATGA	1 cut(s)	619
CfoI	GCGC	1 cut(s)	363
Cfr10I	RCCGGY	1 cut(s)	80
Cfr13I	GGNCC	1 cut(s)	601
Csp6I	GTAC	1 cut(s)	451
CviAII	CATG	2 cut(s)	376, 620
CviQI	GTAC	1 cut(s)	451
DdeI	CTNAG	3 cut(s)	239, 357, 705
DpnI	GATC	4 cut(s)	95, 162, 252, 733
DpnII	GATC	4 cut(s)	93, 160, 250, 731
Eam1104I	CTCTTC	1 cut(s)	673
EarI	CTCTTC	1 cut(s)	673
EciI	GGCGGA	1 cut(s)	42
Eco47I	GGWCC	1 cut(s)	601
EcoO109I	RGGNCCY	1 cut(s)	601
EcoRI	GAATTC	1 cut(s)	329
EcoRII	CCWGG	1 cut(s)	440
FaeI	CATG	2 cut(s)	379, 623
FaiI	YATR	6 cut(s)	86, 377, 563, 621, 803, 805
FaqI	GGGAC	1 cut(s)	614
FatI	CATG	2 cut(s)	375, 619
FblI	GTMKAC	2 cut(s)	121, 368
Fnu4HI	GCNGC	5 cut(s)	78, 176, 408, 497, 675
FokI	GGATG	2 cut(s)	458, 779
Fsp4HI	GCNGC	5 cut(s)	78, 176, 408, 497, 675
FspBI	CTAG	3 cut(s)	585, 690, 701
GlaI	GCGC	1 cut(s)	362
GluI	GCNGC	5 cut(s)	78, 176, 408, 497, 675
GsuI	CTGGAG	1 cut(s)	221
HapII	CCGG	1 cut(s)	81
HhaI	GCGC	1 cut(s)	363
Hin1II	CATG	2 cut(s)	379, 623
Hin6I	GCGC	1 cut(s)	361
HinP1I	GCGC	1 cut(s)	361
HincII	GTYRAC	2 cut(s)	122, 458
HindII	GTYRAC	2 cut(s)	122, 458
HindIII	AAGCTT	1 cut(s)	296
HinfI	GANTC	2 cut(s)	245, 365
HpaII	CCGG	1 cut(s)	81
HphI	GGTGA	3 cut(s)	155, 763, 784
Hpy166II	GTNNAC	3 cut(s)	122, 369, 458
Hpy188I	TCNGA	3 cut(s)	140, 250, 358
Hpy188III	TCNNGA	6 cut(s)	11, 91, 158, 334, 470, 620
Hpy8I	GTNNAC	3 cut(s)	122, 369, 458
Hpy99I	CGWCG	2 cut(s)	67, 123
HpyAV	CCTTC	2 cut(s)	40, 390
HpyCH4III	ACNGT	2 cut(s)	145, 455
HpyCH4V	TGCA	6 cut(s)	19, 56, 178, 302, 325, 677
HpyF10VI	GCNNNNNNNGC	4 cut(s)	77, 299, 404, 413
HpyF3I	CTNAG	3 cut(s)	239, 357, 705
Hsp92II	CATG	2 cut(s)	379, 623
HspAI	GCGC	1 cut(s)	361
KroI	GCCGGC	1 cut(s)	80
KroNI	GCCGGC	1 cut(s)	82
Kzo9I	GATC	4 cut(s)	93, 160, 250, 731
LmnI	GCTCC	1 cut(s)	472
Lsp1109I	GCAGC	5 cut(s)	64, 162, 394, 483, 661
LweI	GCATC	4 cut(s)	59, 65, 121, 280
MaeI	CTAG	3 cut(s)	585, 690, 701
MalI	GATC	4 cut(s)	95, 162, 252, 733
MboI	GATC	4 cut(s)	93, 160, 250, 731
MboII	GAAGA	4 cut(s)	299, 578, 660, 726
MfeI	CAATTG	1 cut(s)	759
MflI	RGATCY	1 cut(s)	731
MluCI	AATT	4 cut(s)	329, 531, 573, 759
MlyI	GAGTC	1 cut(s)	374
MroNI	GCCGGC	1 cut(s)	80
MseI	TTAA	3 cut(s)	519, 555, 723
MslI	CAYNNNNRTG	1 cut(s)	261
MspI	CCGG	1 cut(s)	81
MspR9I	CCNGG	1 cut(s)	442
MunI	CAATTG	1 cut(s)	759
MvaI	CCWGG	1 cut(s)	442
MvnI	CGCG	1 cut(s)	363
MwoI	GCNNNNNNNGC	4 cut(s)	77, 299, 404, 413
NaeI	GCCGGC	1 cut(s)	82
NdeII	GATC	4 cut(s)	93, 160, 250, 731
NgoMIV	GCCGGC	1 cut(s)	80
NheI	GCTAGC	1 cut(s)	700
NlaIII	CATG	2 cut(s)	379, 623
NlaIV	GGNNCC	2 cut(s)	435, 602
NspI	RCATGY	1 cut(s)	379
PagI	TCATGA	1 cut(s)	619
PcsI	WCGNNNNNNNCGW	1 cut(s)	734
PdiI	GCCGGC	1 cut(s)	82
PfeI	GAWTC	1 cut(s)	245
PkrI	GCNGC	5 cut(s)	79, 177, 409, 498, 676
PleI	GAGTC	1 cut(s)	373
PpsI	GAGTC	1 cut(s)	373
PpuMI	RGGWCCY	1 cut(s)	601
Psp5II	RGGWCCY	1 cut(s)	601
Psp6I	CCWGG	1 cut(s)	440
PspGI	CCWGG	1 cut(s)	440
PspN4I	GGNNCC	2 cut(s)	435, 602
PspPI	GGNCC	1 cut(s)	601
PspPPI	RGGWCCY	1 cut(s)	601
PsuI	RGATCY	1 cut(s)	731
RsaI	GTAC	1 cut(s)	452
RsaNI	GTAC	1 cut(s)	451
RseI	CAYNNNNRTG	1 cut(s)	261
SalI	GTCGAC	1 cut(s)	120
SaqAI	TTAA	3 cut(s)	519, 555, 723
SatI	GCNGC	5 cut(s)	78, 176, 408, 497, 675
Sau3AI	GATC	4 cut(s)	93, 160, 250, 731
Sau96I	GGNCC	1 cut(s)	601
SchI	GAGTC	1 cut(s)	374
ScrFI	CCNGG	1 cut(s)	442
SfaNI	GCATC	4 cut(s)	59, 65, 121, 280
SinI	GGWCC	1 cut(s)	601
SmiMI	CAYNNNNRTG	1 cut(s)	261
Sse9I	AATT	4 cut(s)	329, 531, 573, 759
SsiI	CCGC	3 cut(s)	27, 71, 166
SspI	AATATT	2 cut(s)	428, 594
SspMI	CTAG	3 cut(s)	585, 690, 701
StyD4I	CCNGG	1 cut(s)	440
TaaI	ACNGT	2 cut(s)	145, 455
TaqI	TCGA	1 cut(s)	121
TasI	AATT	4 cut(s)	329, 531, 573, 759
TfiI	GAWTC	1 cut(s)	245
Tru1I	TTAA	3 cut(s)	519, 555, 723
Tru9I	TTAA	3 cut(s)	519, 555, 723
TscAI	CASTG	1 cut(s)	106
TseI	GCWGC	5 cut(s)	77, 175, 407, 496, 674
TspDTI	ATGAA	3 cut(s)	454, 608, 638
TspGWI	ACGGA	3 cut(s)	51, 107, 208
TspRI	CASTG	1 cut(s)	106
VpaK11BI	GGWCC	1 cut(s)	601
XapI	RAATTY	1 cut(s)	329
XceI	RCATGY	1 cut(s)	379
XmiI	GTMKAC	2 cut(s)	121, 368
XspI	CTAG	3 cut(s)	585, 690, 701

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.