Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0011627

Physical Location & Seq

Genomic Coordinates Reverse (-)

45200532 .. 45204854

Gene Structure 4323 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00251250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGAGATTGTGGTGGAGAGCAATTCGGGATTTTCCAGGCCCAAGAGGGTTGGGAATAGGCAGGTGGTATGGATGAGCCAATGCTTTGCTCACCTTCGCAGTCACAATTCTCGCCCTCATGTGCGCCGTGGCCTCCATGTCCGACAATTTCAACACCCCATCTCCCACTTCTCAAGTCCAGGTGCTGAATATCAATTGGTTTCAGAAGCAACCAAATGGGAACGACGAGATAAATTTCGGAGTTTATTTTCACGCTACACATTCACTCCATTCGTAGGAAGTCATGCTGCAGTTATAGTAGAAATTTTGACAACTATGGCTTGTTGCAGTCTTGGGCTTAGCTTGAATACTAGTAATTTTAGTTTGAAGAAACCCCTTGTAAACTCATTACCAACTGGGGCTTTGGTGGAAGGCTTCCCTATGTTTGGTTCCAAAAGCATCAGCATTATTCGAAAGGGAAGAATGAATGTGAACATCAAAGAATGGCAAGAGAAAACTTATGTGTCATCTGAAATACAAGGCAACAACAAACTTGAAAAACAATATGTTGTTGGAACAGCTGAGAAACAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009719 GO:0009725 GO:0009735 GO:0009743 GO:0009744 GO:0009941 GO:0010033 GO:0010319 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034285 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055035 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

190

Amino Acids

21.57

Weight (kDa)

10.11

Isoelectric Point (pI)

47.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011627)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000009658 RLG00000012960
rosa_multiflora	Rmu_sc0000613.1_g000035
rosa_roxburghii	Rroxscaffold_3G00251250
rosa_rugosa	Rorug02G0653900
rosa_samantha	Rh1BG296900 Rh1CG313100 Rh2AG328500 Rh2AG504700 Rh3BG308200 Rh4BG209000 Rh4BG262000 Rh4DG045400 Rh4DG124300 Rh5CG367300 Rh5DG414400 Rh6CG017900 Rh6CG023700 Rh6DG018900 Rh7DG292100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	52
Acc36I	ACCTGC	1 cut(s)	52
AcsI	RAATTY	2 cut(s)	233, 303
AfiI	CCNNNNNNNGG	2 cut(s)	275, 425
AgsI	TTSAA	4 cut(s)	152, 346, 367, 536
AhlI	ACTAGT	1 cut(s)	350
AjnI	CCWGG	2 cut(s)	35, 178
AluBI	AGCT	2 cut(s)	342, 560
AluI	AGCT	2 cut(s)	342, 560
AlwNI	CAGNNNCTG	1 cut(s)	185
AoxI	GGCC	2 cut(s)	38, 130
ApeKI	GCWGC	1 cut(s)	287
ApoI	RAATTY	2 cut(s)	233, 303
AspLEI	GCGC	1 cut(s)	126
AspS9I	GGNCC	1 cut(s)	39
AsuHPI	GGTGA	1 cut(s)	83
AsuII	TTCGAA	1 cut(s)	451
BbvI	GCAGC	1 cut(s)	274
BccI	CCATC	1 cut(s)	167
BceAI	ACGGC	1 cut(s)	111
BciT130I	CCWGG	2 cut(s)	37, 180
BcuI	ACTAGT	1 cut(s)	350
BfaI	CTAG	1 cut(s)	351
BfmI	CTRYAG	1 cut(s)	288
BfuAI	ACCTGC	1 cut(s)	52
BisI	GCNGC	1 cut(s)	288
BlpI	GCTNAGC	1 cut(s)	338
BlsI	GCNGC	1 cut(s)	289
Bme1390I	CCNGG	2 cut(s)	37, 180
BmgT120I	GGNCC	1 cut(s)	39
BmiI	GGNNCC	1 cut(s)	430
BmrFI	CCNGG	2 cut(s)	37, 180
BmrI	ACTGGG	1 cut(s)	405
BmsI	GCATC	1 cut(s)	447
BmuI	ACTGGG	1 cut(s)	405
Bpu1102I	GCTNAGC	1 cut(s)	338
Bpu14I	TTCGAA	1 cut(s)	451
BpuEI	CTTGAG	1 cut(s)	157
BsaJI	CCNNGG	1 cut(s)	127
BsaXI	ACNNNNNCTCC	4 cut(s)	146, 176, 250, 280
Bsc4I	CCNNNNNNNGG	2 cut(s)	275, 425
Bse1I	ACTGG	1 cut(s)	400
BseBI	CCWGG	2 cut(s)	37, 180
BseDI	CCNNGG	1 cut(s)	127
BseGI	GGATG	1 cut(s)	78
BseLI	CCNNNNNNNGG	2 cut(s)	275, 425
BseMII	CTCAG	1 cut(s)	552
BseNI	ACTGG	1 cut(s)	400
BseXI	GCAGC	1 cut(s)	274
BshFI	GGCC	2 cut(s)	40, 132
BslI	CCNNNNNNNGG	2 cut(s)	275, 425
BsnI	GGCC	2 cut(s)	40, 132
Bsp119I	TTCGAA	1 cut(s)	451
Bsp1720I	GCTNAGC	1 cut(s)	338
BspANI	GGCC	2 cut(s)	40, 132
BspCNI	CTCAG	1 cut(s)	553
BspLI	GGNNCC	1 cut(s)	430
BspMAI	CTGCAG	1 cut(s)	292
BspMI	ACCTGC	1 cut(s)	52
BspT104I	TTCGAA	1 cut(s)	451
BsrI	ACTGG	1 cut(s)	400
BssECI	CCNNGG	1 cut(s)	127
Bst2UI	CCWGG	2 cut(s)	37, 180
BstBI	TTCGAA	1 cut(s)	451
BstDEI	CTNAG	2 cut(s)	338, 561
BstDSI	CCRYGG	1 cut(s)	127
BstF5I	GGATG	1 cut(s)	78
BstHHI	GCGC	1 cut(s)	126
BstNI	CCWGG	2 cut(s)	37, 180
BstSCI	CCNGG	2 cut(s)	35, 178
BstSFI	CTRYAG	1 cut(s)	288
BstV1I	GCAGC	1 cut(s)	274
BsuRI	GGCC	2 cut(s)	40, 132
BtgI	CCRYGG	1 cut(s)	127
BtsCI	GGATG	1 cut(s)	78
BveI	ACCTGC	1 cut(s)	52
CaiI	CAGNNNCTG	1 cut(s)	185
CfoI	GCGC	1 cut(s)	126
Cfr13I	GGNCC	1 cut(s)	39
CviAII	CATG	3 cut(s)	119, 137, 284
CviJI	RGCY	9 cut(s)	40, 78, 132, 320, 337, 342, 401, 414, 560
CviKI_1	RGCY	9 cut(s)	40, 78, 132, 320, 337, 342, 401, 414, 560
DdeI	CTNAG	2 cut(s)	338, 561
EcoRII	CCWGG	2 cut(s)	35, 178
FaeI	CATG	3 cut(s)	122, 140, 287
FaiI	YATR	9 cut(s)	70, 120, 138, 285, 296, 317, 422, 501, 546
FatI	CATG	3 cut(s)	118, 136, 283
Fnu4HI	GCNGC	1 cut(s)	288
FokI	GGATG	1 cut(s)	85
Fsp4HI	GCNGC	1 cut(s)	288
FspBI	CTAG	1 cut(s)	351
GlaI	GCGC	1 cut(s)	125
GluI	GCNGC	1 cut(s)	288
HaeIII	GGCC	2 cut(s)	40, 132
HhaI	GCGC	1 cut(s)	126
Hin1II	CATG	3 cut(s)	122, 140, 287
Hin6I	GCGC	1 cut(s)	124
HinP1I	GCGC	1 cut(s)	124
HphI	GGTGA	1 cut(s)	83
Hpy166II	GTNNAC	2 cut(s)	382, 472
Hpy188I	TCNGA	4 cut(s)	143, 205, 240, 511
Hpy188III	TCNNGA	1 cut(s)	27
Hpy8I	GTNNAC	2 cut(s)	382, 472
Hpy99I	CGWCG	1 cut(s)	228
HpyAV	CCTTC	2 cut(s)	104, 404
HpyCH4V	TGCA	2 cut(s)	290, 327
HpyF3I	CTNAG	2 cut(s)	338, 561
Hsp92II	CATG	3 cut(s)	122, 140, 287
HspAI	GCGC	1 cut(s)	124
LpnPI	CCDG	6 cut(s)	22, 47, 49, 165, 192, 381
Lsp1109I	GCAGC	1 cut(s)	274
LweI	GCATC	1 cut(s)	447
MaeI	CTAG	1 cut(s)	351
MaeIII	GTNAC	1 cut(s)	101
MboII	GAAGA	2 cut(s)	379, 471
MfeI	CAATTG	1 cut(s)	194
MluCI	AATT	7 cut(s)	22, 106, 146, 194, 233, 303, 355
MmeI	TCCRAC	2 cut(s)	166, 532
MnlI	CCTC	3 cut(s)	39, 126, 143
MspA1I	CMGCKG	1 cut(s)	560
MspR9I	CCNGG	2 cut(s)	37, 180
MunI	CAATTG	1 cut(s)	194
MvaI	CCWGG	2 cut(s)	37, 180
NlaIII	CATG	3 cut(s)	122, 140, 287
NlaIV	GGNNCC	1 cut(s)	430
NmuCI	GTSAC	1 cut(s)	101
NspV	TTCGAA	1 cut(s)	451
PaqCI	CACCTGC	1 cut(s)	52
PkrI	GCNGC	1 cut(s)	289
Psp6I	CCWGG	2 cut(s)	35, 178
PspGI	CCWGG	2 cut(s)	35, 178
PspN4I	GGNNCC	1 cut(s)	430
PspPI	GGNCC	1 cut(s)	39
PstI	CTGCAG	1 cut(s)	292
PstNI	CAGNNNCTG	1 cut(s)	185
PvuII	CAGCTG	1 cut(s)	560
SatI	GCNGC	1 cut(s)	288
Sau96I	GGNCC	1 cut(s)	39
ScrFI	CCNGG	2 cut(s)	37, 180
SetI	ASST	5 cut(s)	66, 96, 184, 344, 562
SfaNI	GCATC	1 cut(s)	447
SfcI	CTRYAG	1 cut(s)	288
SfuI	TTCGAA	1 cut(s)	451
SmlI	CTYRAG	1 cut(s)	172
SmoI	CTYRAG	1 cut(s)	172
SpeI	ACTAGT	1 cut(s)	350
Sse9I	AATT	7 cut(s)	22, 106, 146, 194, 233, 303, 355
SspMI	CTAG	1 cut(s)	351
StyD4I	CCNGG	2 cut(s)	35, 178
TaqI	TCGA	1 cut(s)	451
TasI	AATT	7 cut(s)	22, 106, 146, 194, 233, 303, 355
TseFI	GTSAC	1 cut(s)	101
TseI	GCWGC	1 cut(s)	287
Tsp45I	GTSAC	1 cut(s)	101
TspDTI	ATGAA	1 cut(s)	479
XapI	RAATTY	2 cut(s)	233, 303
XspI	CTAG	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.