Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0011627

Physical Location & Seq

Genomic Coordinates Reverse (-)

2137244 .. 2175535

Gene Structure 38292 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG023700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGCAATCAAATACAAAATACATGAAAACTCCATGACTATTAAGTATACTGTAACATTGGTTAGGGAAGGGAGGGGCCCGTATAGTGATCCTCAATGTCCCTATTTCTATGAAGATGAAGATGTTTGGATGGCACCAGGCTTCATAAACCAATTCTATGAACTGCATCCCTCTGTCGATTTCAACAGCCCATGTTCCACTTCCCAAGTCGAGGTGCTAAAAATCAATTGGTTTCAGGAGCAATCAAATGGGAACGATGAGTGCGTTTCAAAAAATTCATACAAGAGACTCTTTTTTCTACGATGCCTGGCAGAACCCGCAACATCGTGCGAGTCTCCTTTCAACACAAGAACAGTCAATCGAAGAGATAAGTTTTGCAGCAGAATCTCAGCCAAAACAGAAAACAGAAGAAGTGTTGCTGGGTTTGGGATTTCAGTGATTGAAGATTTCACCGAGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006886 GO:0006996 GO:0007275 GO:0008104 GO:0008150 GO:0008565 GO:0009507 GO:0009526 GO:0009528 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009658 GO:0009706 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0009987 GO:0010154 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019866 GO:0022414 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0033036 GO:0033365 GO:0034357 GO:0034613 GO:0042170 GO:0042651 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055035 GO:0055085 GO:0061458 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072596 GO:0072598

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MORN

Protein Analysis

153

Amino Acids

17.74

Weight (kDa)

5.74

Isoelectric Point (pI)

56.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011627)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000009658 RLG00000012960
rosa_multiflora	Rmu_sc0000613.1_g000035
rosa_roxburghii	Rroxscaffold_3G00251250
rosa_rugosa	Rorug02G0653900
rosa_samantha	Rh1BG296900 Rh1CG313100 Rh2AG328500 Rh2AG504700 Rh3BG308200 Rh4BG209000 Rh4BG262000 Rh4DG045400 Rh4DG124300 Rh5CG367300 Rh5DG414400 Rh6CG017900 Rh6CG023700 Rh6DG018900 Rh7DG292100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	133
AccI	GTMKAC	1 cut(s)	47
AciI	CCGC	1 cut(s)	318
AclWI	GGATC	1 cut(s)	83
AcsI	RAATTY	1 cut(s)	274
AfiI	CCNNNNNNNGG	1 cut(s)	211
AgsI	TTSAA	4 cut(s)	184, 270, 343, 443
AjnI	CCWGG	2 cut(s)	136, 306
Alw26I	GTCTC	2 cut(s)	280, 339
AlwI	GGATC	1 cut(s)	83
AoxI	GGCC	1 cut(s)	76
ApaI	GGGCCC	1 cut(s)	80
ApeKI	GCWGC	1 cut(s)	378
ApoI	RAATTY	1 cut(s)	274
AspS9I	GGNCC	2 cut(s)	76, 77
AsuHPI	GGTGA	1 cut(s)	442
BaeGI	GKGCMC	1 cut(s)	80
BanI	GGYRCC	1 cut(s)	133
BanII	GRGCYC	1 cut(s)	80
BbvI	GCAGC	1 cut(s)	390
BccI	CCATC	1 cut(s)	124
BciT130I	CCWGG	2 cut(s)	138, 308
BcoDI	GTCTC	2 cut(s)	280, 339
BisI	GCNGC	1 cut(s)	379
BlsI	GCNGC	1 cut(s)	380
Bme1390I	CCNGG	2 cut(s)	138, 308
BmgT120I	GGNCC	2 cut(s)	76, 77
BmiI	GGNNCC	3 cut(s)	77, 78, 135
BmrFI	CCNGG	2 cut(s)	138, 308
BmsI	GCATC	2 cut(s)	175, 293
Bsc4I	CCNNNNNNNGG	1 cut(s)	211
BseBI	CCWGG	2 cut(s)	138, 308
BseGI	GGATG	2 cut(s)	135, 166
BseLI	CCNNNNNNNGG	1 cut(s)	211
BseMII	CTCAG	1 cut(s)	402
BseSI	GKGCMC	1 cut(s)	80
BseXI	GCAGC	1 cut(s)	390
BseYI	CCCAGC	1 cut(s)	419
BshFI	GGCC	1 cut(s)	78
BshNI	GGYRCC	1 cut(s)	133
BslFI	GGGAC	1 cut(s)	84
BslI	CCNNNNNNNGG	1 cut(s)	211
BsmAI	GTCTC	2 cut(s)	280, 339
BsmFI	GGGAC	1 cut(s)	84
BsnI	GGCC	1 cut(s)	78
Bsp120I	GGGCCC	1 cut(s)	76
Bsp1286I	GDGCHC	1 cut(s)	80
Bsp143I	GATC	1 cut(s)	88
BspACI	CCGC	1 cut(s)	318
BspANI	GGCC	1 cut(s)	78
BspCNI	CTCAG	1 cut(s)	401
BspLI	GGNNCC	3 cut(s)	77, 78, 135
BspPI	GGATC	1 cut(s)	83
BspT107I	GGYRCC	1 cut(s)	133
BssMI	GATC	1 cut(s)	88
BssNAI	GTATAC	1 cut(s)	48
Bst1107I	GTATAC	1 cut(s)	48
Bst2UI	CCWGG	2 cut(s)	138, 308
Bst4CI	ACNGT	2 cut(s)	52, 355
Bst6I	CTCTTC	1 cut(s)	358
BstDEI	CTNAG	1 cut(s)	388
BstF5I	GGATG	2 cut(s)	135, 166
BstKTI	GATC	1 cut(s)	91
BstMAI	GTCTC	2 cut(s)	280, 339
BstMBI	GATC	1 cut(s)	88
BstMWI	GCNNNNNNNGC	1 cut(s)	317
BstNI	CCWGG	2 cut(s)	138, 308
BstSCI	CCNGG	2 cut(s)	136, 306
BstSLI	GKGCMC	1 cut(s)	80
BstV1I	GCAGC	1 cut(s)	390
BstZ17I	GTATAC	1 cut(s)	48
BsuRI	GGCC	1 cut(s)	78
BtsCI	GGATG	2 cut(s)	135, 166
BtsIMutI	CAGTG	1 cut(s)	441
Cfr13I	GGNCC	2 cut(s)	76, 77
CviAII	CATG	3 cut(s)	23, 34, 192
CviJI	RGCY	4 cut(s)	78, 141, 189, 392
CviKI_1	RGCY	4 cut(s)	78, 141, 189, 392
DdeI	CTNAG	1 cut(s)	388
DpnI	GATC	1 cut(s)	90
DpnII	GATC	1 cut(s)	88
Eam1104I	CTCTTC	1 cut(s)	358
EarI	CTCTTC	1 cut(s)	358
Eco24I	GRGCYC	1 cut(s)	80
EcoO109I	RGGNCCY	1 cut(s)	76
EcoRII	CCWGG	2 cut(s)	136, 306
EcoT38I	GRGCYC	1 cut(s)	80
FaeI	CATG	3 cut(s)	26, 37, 195
FaiI	YATR	9 cut(s)	24, 35, 48, 84, 111, 146, 159, 193, 280
FalI	AAGNNNNNCTT	2 cut(s)	275, 307
FaqI	GGGAC	1 cut(s)	84
FatI	CATG	3 cut(s)	22, 33, 191
FauI	CCCGC	1 cut(s)	325
FblI	GTMKAC	1 cut(s)	47
Fnu4HI	GCNGC	1 cut(s)	379
FokI	GGATG	2 cut(s)	142, 153
FriOI	GRGCYC	1 cut(s)	80
Fsp4HI	GCNGC	1 cut(s)	379
GluI	GCNGC	1 cut(s)	379
GsaI	CCCAGC	1 cut(s)	423
HaeIII	GGCC	1 cut(s)	78
Hin1II	CATG	3 cut(s)	26, 37, 195
HinfI	GANTC	3 cut(s)	288, 332, 384
HphI	GGTGA	1 cut(s)	442
Hpy166II	GTNNAC	1 cut(s)	48
Hpy188III	TCNNGA	1 cut(s)	236
Hpy8I	GTNNAC	1 cut(s)	48
HpyAV	CCTTC	1 cut(s)	62
HpyCH4III	ACNGT	2 cut(s)	52, 355
HpyCH4V	TGCA	2 cut(s)	166, 378
HpyF10VI	GCNNNNNNNGC	1 cut(s)	317
HpyF3I	CTNAG	1 cut(s)	388
Hsp92II	CATG	3 cut(s)	26, 37, 195
Kzo9I	GATC	1 cut(s)	88
LmnI	GCTCC	1 cut(s)	238
LpnPI	CCDG	6 cut(s)	123, 150, 221, 293, 320, 405
Lsp1109I	GCAGC	1 cut(s)	390
LweI	GCATC	2 cut(s)	175, 293
MaeIII	GTNAC	1 cut(s)	52
MalI	GATC	1 cut(s)	90
MboI	GATC	1 cut(s)	88
MboII	GAAGA	5 cut(s)	125, 131, 375, 420, 455
MfeI	CAATTG	1 cut(s)	226
MhlI	GDGCHC	1 cut(s)	80
MluCI	AATT	3 cut(s)	152, 226, 274
MlyI	GAGTC	2 cut(s)	282, 341
MnlI	CCTC	4 cut(s)	66, 102, 181, 205
MseI	TTAA	1 cut(s)	42
MspR9I	CCNGG	2 cut(s)	138, 308
MunI	CAATTG	1 cut(s)	226
MvaI	CCWGG	2 cut(s)	138, 308
MwoI	GCNNNNNNNGC	1 cut(s)	317
NdeII	GATC	1 cut(s)	88
NlaIII	CATG	3 cut(s)	26, 37, 195
NlaIV	GGNNCC	3 cut(s)	77, 78, 135
PcsI	WCGNNNNNNNCGW	1 cut(s)	261
PfeI	GAWTC	1 cut(s)	384
PkrI	GCNGC	1 cut(s)	380
PleI	GAGTC	2 cut(s)	282, 340
PpsI	GAGTC	2 cut(s)	282, 340
Psp6I	CCWGG	2 cut(s)	136, 306
PspFI	CCCAGC	1 cut(s)	419
PspGI	CCWGG	2 cut(s)	136, 306
PspN4I	GGNNCC	3 cut(s)	77, 78, 135
PspOMI	GGGCCC	1 cut(s)	76
PspPI	GGNCC	2 cut(s)	76, 77
SaqAI	TTAA	1 cut(s)	42
SatI	GCNGC	1 cut(s)	379
Sau3AI	GATC	1 cut(s)	88
Sau96I	GGNCC	2 cut(s)	76, 77
SchI	GAGTC	2 cut(s)	282, 341
ScrFI	CCNGG	2 cut(s)	138, 308
SduI	GDGCHC	1 cut(s)	80
SetI	ASST	1 cut(s)	216
SfaNI	GCATC	2 cut(s)	175, 293
Sse9I	AATT	3 cut(s)	152, 226, 274
SsiI	CCGC	1 cut(s)	318
StyD4I	CCNGG	2 cut(s)	136, 306
TaaI	ACNGT	2 cut(s)	52, 355
TaqI	TCGA	3 cut(s)	177, 210, 361
TasI	AATT	3 cut(s)	152, 226, 274
TfiI	GAWTC	1 cut(s)	384
Tru1I	TTAA	1 cut(s)	42
Tru9I	TTAA	1 cut(s)	42
TscAI	CASTG	1 cut(s)	441
TseI	GCWGC	1 cut(s)	378
TspDTI	ATGAA	6 cut(s)	39, 126, 132, 133, 174, 267
TspRI	CASTG	1 cut(s)	441
XapI	RAATTY	1 cut(s)	274
XmiI	GTMKAC	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.