Rh5CG367300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0011627
Physical Location & Seq
Reverse (-)
44844357 .. 44846465
2109 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG367300.1

Sequence Viewer

Length: 297 bp
ATGGCCAAGGCGTTGACGGGAGGATTGAACATGGTGATGACGGTGACGCCGTCGCTTCCAACCTCCAAGGTGACCTTGACGCCCGCCATGGATCCACGAACCAGAAGCAACCTGGGGTTTTGTGATGAGGATAAGAAAATGGAGGAGAAAGCAAAAACGAAGATGATTGAGTATGAGATCACACTACTACGAGTATGGTGCACTCATATATTAGTGTTGAAGTTACTAGGTTTGGAGACTGTACTATTAGTAGCCGGGACATTGCTGCCTATCACCAATGCAGTGCTTGACAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

98

Amino Acids

10.79

Weight (kDa)

8.64

Isoelectric Point (pI)

45.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 84
AclWI GGATC 2 cut(s) 86, 99
AcoI YGGCCR 1 cut(s) 3
AcyI GRCGYC 2 cut(s) 47, 80
AfaI GTAC 1 cut(s) 243
AgsI TTSAA 2 cut(s) 28, 220
AjnI CCWGG 1 cut(s) 111
Alw21I GWGCWC 1 cut(s) 203
Alw26I GTCTC 1 cut(s) 230
Alw44I GTGCAC 1 cut(s) 199
AlwI GGATC 2 cut(s) 86, 99
AoxI GGCC 1 cut(s) 3
ApaLI GTGCAC 1 cut(s) 199
ApeKI GCWGC 1 cut(s) 265
AsuC2I CCSGG 1 cut(s) 256
AsuHPI GGTGA 4 cut(s) 46, 55, 82, 265
BaeGI GKGCMC 1 cut(s) 203
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 1 cut(s) 91
Bbv12I GWGCWC 1 cut(s) 203
BbvI GCAGC 1 cut(s) 252
BceAI ACGGC 1 cut(s) 34
BcgI CGANNNNNNTGC 2 cut(s) 180, 214
BciT130I CCWGG 1 cut(s) 113
BcnI CCSGG 1 cut(s) 256
BcoDI GTCTC 1 cut(s) 230
BfaI CTAG 1 cut(s) 227
BisI GCNGC 1 cut(s) 266
BlsI GCNGC 1 cut(s) 267
Bme1390I CCNGG 2 cut(s) 113, 256
BmiI GGNNCC 1 cut(s) 93
BmrFI CCNGG 2 cut(s) 113, 256
BpuMI CCSGG 1 cut(s) 256
BsaHI GRCGYC 2 cut(s) 47, 80
BsaJI CCNNGG 4 cut(s) 6, 66, 87, 112
Bse3DI GCAATG 1 cut(s) 260
BseBI CCWGG 1 cut(s) 113
BseDI CCNNGG 4 cut(s) 6, 66, 87, 112
BseMI GCAATG 1 cut(s) 260
BseRI GAGGAG 1 cut(s) 158
BseSI GKGCMC 1 cut(s) 203
BseXI GCAGC 1 cut(s) 252
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 1 cut(s) 203
BsiSI CCGG 1 cut(s) 255
BslFI GGGAC 1 cut(s) 271
BsmAI GTCTC 1 cut(s) 230
BsmFI GGGAC 1 cut(s) 271
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 203
Bsp143I GATC 2 cut(s) 91, 177
Bsp19I CCATGG 1 cut(s) 87
BspACI CCGC 1 cut(s) 84
BspANI GGCC 1 cut(s) 5
BspLI GGNNCC 1 cut(s) 93
BspPI GGATC 2 cut(s) 86, 99
BsrDI GCAATG 1 cut(s) 260
BssECI CCNNGG 4 cut(s) 6, 66, 87, 112
BssMI GATC 2 cut(s) 91, 177
BssNI GRCGYC 2 cut(s) 47, 80
BssT1I CCWWGG 3 cut(s) 6, 66, 87
Bst2UI CCWGG 1 cut(s) 113
Bst4CI ACNGT 2 cut(s) 43, 241
BstACI GRCGYC 2 cut(s) 47, 80
BstC8I GCNNGC 1 cut(s) 84
BstDSI CCRYGG 1 cut(s) 87
BstEII GGTNACC 1 cut(s) 70
BstKTI GATC 2 cut(s) 94, 180
BstMAI GTCTC 1 cut(s) 230
BstMBI GATC 2 cut(s) 91, 177
BstNI CCWGG 1 cut(s) 113
BstPI GGTNACC 1 cut(s) 70
BstSCI CCNGG 2 cut(s) 111, 254
BstSLI GKGCMC 1 cut(s) 203
BstV1I GCAGC 1 cut(s) 252
BstX2I RGATCY 1 cut(s) 91
BstYI RGATCY 1 cut(s) 91
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 1 cut(s) 87
BtsI GCAGTG 1 cut(s) 288
BtsIMutI CAGTG 1 cut(s) 288
Cac8I GCNNGC 1 cut(s) 84
CseI GACGC 2 cut(s) 55, 88
Csp6I GTAC 1 cut(s) 242
CviAII CATG 2 cut(s) 31, 88
CviJI RGCY 2 cut(s) 5, 254
CviKI_1 RGCY 2 cut(s) 5, 254
CviQI GTAC 1 cut(s) 242
DpnI GATC 2 cut(s) 93, 179
DpnII GATC 2 cut(s) 91, 177
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 3 cut(s) 6, 66, 87
Eco91I GGTNACC 1 cut(s) 70
EcoO65I GGTNACC 1 cut(s) 70
EcoRII CCWGG 1 cut(s) 111
EcoT14I CCWWGG 3 cut(s) 6, 66, 87
ErhI CCWWGG 3 cut(s) 6, 66, 87
FaeI CATG 2 cut(s) 34, 91
FaiI YATR 6 cut(s) 32, 89, 174, 196, 207, 209
FalI AAGNNNNNCTT 2 cut(s) 59, 91
FaqI GGGAC 1 cut(s) 271
FatI CATG 2 cut(s) 30, 87
FauI CCCGC 1 cut(s) 91
Fnu4HI GCNGC 1 cut(s) 266
Fsp4HI GCNGC 1 cut(s) 266
FspBI CTAG 1 cut(s) 227
GluI GCNGC 1 cut(s) 266
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 255
HgaI GACGC 2 cut(s) 55, 88
Hin1I GRCGYC 2 cut(s) 47, 80
Hin1II CATG 2 cut(s) 34, 91
HincII GTYRAC 1 cut(s) 15
HindII GTYRAC 1 cut(s) 15
HpaII CCGG 1 cut(s) 255
HphI GGTGA 4 cut(s) 46, 55, 82, 265
Hpy166II GTNNAC 2 cut(s) 15, 201
Hpy8I GTNNAC 2 cut(s) 15, 201
Hpy99I CGWCG 1 cut(s) 55
HpyCH4III ACNGT 2 cut(s) 43, 241
HpyCH4V TGCA 2 cut(s) 201, 281
Hsp92I GRCGYC 2 cut(s) 47, 80
Hsp92II CATG 2 cut(s) 34, 91
Kzo9I GATC 2 cut(s) 91, 177
LpnPI CCDG 4 cut(s) 98, 115, 125, 268
Lsp1109I GCAGC 1 cut(s) 252
MaeI CTAG 1 cut(s) 227
MaeIII GTNAC 3 cut(s) 43, 70, 222
MalI GATC 2 cut(s) 93, 179
MboI GATC 2 cut(s) 91, 177
MboII GAAGA 1 cut(s) 172
MflI RGATCY 1 cut(s) 91
MhlI GDGCHC 1 cut(s) 203
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 83
MnlI CCTC 4 cut(s) 14, 73, 121, 136
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MslI CAYNNNNRTG 1 cut(s) 35
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 255
MspR9I CCNGG 2 cut(s) 113, 256
MvaI CCWGG 1 cut(s) 113
NciI CCSGG 1 cut(s) 256
NcoI CCATGG 1 cut(s) 87
NdeII GATC 2 cut(s) 91, 177
NlaIII CATG 2 cut(s) 34, 91
NlaIV GGNNCC 1 cut(s) 93
NmuCI GTSAC 2 cut(s) 43, 70
PcsI WCGNNNNNNNCGW 1 cut(s) 47
PflFI GACNNNGTC 1 cut(s) 49
PkrI GCNGC 1 cut(s) 267
Psp6I CCWGG 1 cut(s) 111
PspEI GGTNACC 1 cut(s) 70
PspGI CCWGG 1 cut(s) 111
PspN4I GGNNCC 1 cut(s) 93
PsuI RGATCY 1 cut(s) 91
PsyI GACNNNGTC 1 cut(s) 49
RsaI GTAC 1 cut(s) 243
RsaNI GTAC 1 cut(s) 242
RseI CAYNNNNRTG 1 cut(s) 35
SatI GCNGC 1 cut(s) 266
Sau3AI GATC 2 cut(s) 91, 177
ScrFI CCNGG 2 cut(s) 113, 256
SduI GDGCHC 1 cut(s) 203
SetI ASST 5 cut(s) 65, 72, 77, 114, 232
SmiMI CAYNNNNRTG 1 cut(s) 35
SsiI CCGC 1 cut(s) 84
SspMI CTAG 1 cut(s) 227
StyD4I CCNGG 2 cut(s) 111, 254
StyI CCWWGG 3 cut(s) 6, 66, 87
TaaI ACNGT 2 cut(s) 43, 241
TatI WGTACW 1 cut(s) 241
TscAI CASTG 1 cut(s) 288
TseFI GTSAC 2 cut(s) 43, 70
TseI GCWGC 1 cut(s) 265
Tsp45I GTSAC 2 cut(s) 43, 70
TspRI CASTG 1 cut(s) 288
Tth111I GACNNNGTC 1 cut(s) 49
VneI GTGCAC 1 cut(s) 199
XcmI CCANNNNNNNNNTGG 1 cut(s) 109
XspI CTAG 1 cut(s) 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.