Rh4BG262000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0011627
Physical Location & Seq
Reverse (-)
43522416 .. 43525073
2658 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG262000.1

Sequence Viewer

Length: 426 bp
ATGGCATCACGCCCGAAGGAAAAGATTTCTCAGGAATTCAAAGACATCTCCATCGAGGATGAAAAAGGCAAGCGCTTAGTGGCGCCACCACAGCCTGCTTCTGAGAACGGCGAAGGTGAGCGAAAGAAGGACGGCATAGGTGAGCAAAAGAAAAACGGCAAAGGCTCGCCTTTTTTTTTCCTTCTTTCGCCTTCCTCCACTCTCTCAAATTCAGAAGAATTAGAAAGTCAACTCTGTTTTCGCGATCCAAAAGAAAGAAAGAAAATCCAATTCCAAACAACTCCGATCGTCTTCTTCAGCTTACAAGTTGGTGGAAGAGGTTTTGTTGGTGTGATAGAAAGGGGAAGAAGAGGGATTGAAATCGGCAGTGTTGGAAAGTTTGAAGCTTTGATCGGTAATGGCAGCAAAAACTGGAAAGACAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

141

Amino Acids

15.69

Weight (kDa)

9.55

Isoelectric Point (pI)

45.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 82
AccII CGCG 1 cut(s) 243
AclWI GGATC 1 cut(s) 239
AcsI RAATTY 2 cut(s) 35, 208
AcuI CTGAAG 1 cut(s) 280
AcyI GRCGYC 1 cut(s) 83
AfeI AGCGCT 1 cut(s) 74
AgsI TTSAA 3 cut(s) 40, 359, 383
AluBI AGCT 2 cut(s) 300, 386
AluI AGCT 2 cut(s) 300, 386
AlwI GGATC 1 cut(s) 239
Aor51HI AGCGCT 1 cut(s) 74
ApeKI GCWGC 1 cut(s) 402
ApoI RAATTY 2 cut(s) 35, 208
AspLEI GCGC 2 cut(s) 75, 85
AsuHPI GGTGA 2 cut(s) 128, 152
BanI GGYRCC 1 cut(s) 82
BbsI GAAGAC 1 cut(s) 283
BbvI GCAGC 1 cut(s) 414
BccI CCATC 1 cut(s) 59
BceAI ACGGC 3 cut(s) 124, 148, 172
BfoI RGCGCY 2 cut(s) 76, 86
BisI GCNGC 1 cut(s) 403
BlsI GCNGC 1 cut(s) 404
BmiI GGNNCC 1 cut(s) 84
BmsI GCATC 1 cut(s) 14
BpiI GAAGAC 1 cut(s) 283
BsaBI GATNNNNATC 1 cut(s) 359
BsaHI GRCGYC 1 cut(s) 83
Bse1I ACTGG 1 cut(s) 416
Bse8I GATNNNNATC 1 cut(s) 359
BseGI GGATG 1 cut(s) 64
BseJI GATNNNNATC 1 cut(s) 359
BseMII CTCAG 2 cut(s) 44, 93
BseNI ACTGG 1 cut(s) 416
BseXI GCAGC 1 cut(s) 414
Bsh1236I CGCG 1 cut(s) 243
Bsh1285I CGRYCG 1 cut(s) 288
BshNI GGYRCC 1 cut(s) 82
BsiEI CGRYCG 1 cut(s) 288
Bsp143I GATC 3 cut(s) 244, 285, 390
Bsp68I TCGCGA 1 cut(s) 243
BspCNI CTCAG 2 cut(s) 43, 94
BspFNI CGCG 1 cut(s) 243
BspLI GGNNCC 1 cut(s) 84
BspPI GGATC 1 cut(s) 239
BspT107I GGYRCC 1 cut(s) 82
BsrI ACTGG 1 cut(s) 416
BssMI GATC 3 cut(s) 244, 285, 390
BssNI GRCGYC 1 cut(s) 83
Bst6I CTCTTC 2 cut(s) 310, 343
BstACI GRCGYC 1 cut(s) 83
BstC8I GCNNGC 3 cut(s) 71, 96, 167
BstDEI CTNAG 3 cut(s) 30, 76, 102
BstF5I GGATG 1 cut(s) 64
BstFNI CGCG 1 cut(s) 243
BstH2I RGCGCY 2 cut(s) 76, 86
BstHHI GCGC 2 cut(s) 75, 85
BstKTI GATC 3 cut(s) 247, 288, 393
BstMBI GATC 3 cut(s) 244, 285, 390
BstMCI CGRYCG 1 cut(s) 288
BstMWI GCNNNNNNNGC 1 cut(s) 91
BstUI CGCG 1 cut(s) 243
BstV1I GCAGC 1 cut(s) 414
BstV2I GAAGAC 1 cut(s) 283
BtsCI GGATG 1 cut(s) 64
BtsI GCAGTG 1 cut(s) 373
BtsIMutI CAGTG 1 cut(s) 373
BtuMI TCGCGA 1 cut(s) 243
Cac8I GCNNGC 3 cut(s) 71, 96, 167
CfoI GCGC 2 cut(s) 75, 85
CviJI RGCY 4 cut(s) 94, 165, 300, 386
CviKI_1 RGCY 4 cut(s) 94, 165, 300, 386
DdeI CTNAG 3 cut(s) 30, 76, 102
DinI GGCGCC 1 cut(s) 84
DpnI GATC 3 cut(s) 246, 287, 392
DpnII GATC 3 cut(s) 244, 285, 390
Eam1104I CTCTTC 2 cut(s) 310, 343
EarI CTCTTC 2 cut(s) 310, 343
Eco47III AGCGCT 1 cut(s) 74
Eco57I CTGAAG 1 cut(s) 280
EcoRI GAATTC 1 cut(s) 35
EgeI GGCGCC 1 cut(s) 84
EheI GGCGCC 1 cut(s) 84
FaiI YATR 1 cut(s) 137
Fnu4HI GCNGC 1 cut(s) 403
FokI GGATG 1 cut(s) 71
Fsp4HI GCNGC 1 cut(s) 403
GlaI GCGC 2 cut(s) 74, 84
GluI GCNGC 1 cut(s) 403
HaeII RGCGCY 2 cut(s) 76, 86
HhaI GCGC 2 cut(s) 75, 85
Hin1I GRCGYC 1 cut(s) 83
Hin6I GCGC 2 cut(s) 73, 83
HinP1I GCGC 2 cut(s) 73, 83
HincII GTYRAC 1 cut(s) 230
HindII GTYRAC 1 cut(s) 230
HindIII AAGCTT 1 cut(s) 384
HphI GGTGA 2 cut(s) 128, 152
Hpy166II GTNNAC 1 cut(s) 230
Hpy188I TCNGA 3 cut(s) 103, 214, 285
Hpy188III TCNNGA 2 cut(s) 32, 242
Hpy8I GTNNAC 1 cut(s) 230
HpyAV CCTTC 5 cut(s) 10, 107, 121, 191, 201
HpyF10VI GCNNNNNNNGC 1 cut(s) 91
HpyF3I CTNAG 3 cut(s) 30, 76, 102
Hsp92I GRCGYC 1 cut(s) 83
HspAI GCGC 2 cut(s) 73, 83
KasI GGCGCC 1 cut(s) 82
Kzo9I GATC 3 cut(s) 244, 285, 390
LpnPI CCDG 3 cut(s) 17, 108, 397
Lsp1109I GCAGC 1 cut(s) 414
LweI GCATC 1 cut(s) 14
MalI GATC 3 cut(s) 246, 287, 392
MboI GATC 3 cut(s) 244, 285, 390
MboII GAAGA 6 cut(s) 227, 283, 286, 327, 357, 360
MluCI AATT 4 cut(s) 35, 208, 218, 269
Mly113I GGCGCC 1 cut(s) 83
MmeI TCCRAC 1 cut(s) 352
MnlI CCTC 4 cut(s) 49, 205, 311, 344
MvnI CGCG 1 cut(s) 243
MwoI GCNNNNNNNGC 1 cut(s) 91
NarI GGCGCC 1 cut(s) 83
NdeII GATC 3 cut(s) 244, 285, 390
NlaIV GGNNCC 1 cut(s) 84
NruI TCGCGA 1 cut(s) 243
PkrI GCNGC 1 cut(s) 404
Ple19I CGATCG 1 cut(s) 288
PluTI GGCGCC 1 cut(s) 86
PspN4I GGNNCC 1 cut(s) 84
PvuI CGATCG 1 cut(s) 288
RruI TCGCGA 1 cut(s) 243
SatI GCNGC 1 cut(s) 403
Sau3AI GATC 3 cut(s) 244, 285, 390
SetI ASST 5 cut(s) 118, 142, 302, 322, 388
SfaNI GCATC 1 cut(s) 14
SfoI GGCGCC 1 cut(s) 84
SgeI CNNG 9 cut(s) 21, 25, 44, 67, 82, 107, 178, 254, 317
Sse9I AATT 4 cut(s) 35, 208, 218, 269
SspDI GGCGCC 1 cut(s) 82
TaqI TCGA 1 cut(s) 54
TasI AATT 4 cut(s) 35, 208, 218, 269
TscAI CASTG 1 cut(s) 373
TseI GCWGC 1 cut(s) 402
TspDTI ATGAA 1 cut(s) 75
TspRI CASTG 1 cut(s) 373
XapI RAATTY 2 cut(s) 35, 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.