Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0015770

Physical Location & Seq

Genomic Coordinates Forward (+)

61243909 .. 61250191

Gene Structure 6283 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009962

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGGAACACCGATTGATGGCTAGTGGAGCTCAATTCATTGAATTGAGTAAAGTGGTGAGCTCGGATACCGAACTGAATAAGAGGAATTGGATGGGCTCTGCTCGACGATCACAGAGCATATCTATGAGTGAGGCTCTGGAAACCCAAGTGAAGGGTAAGGTCTCCATCAAGGAGCTTGGTAATTACAGACATGCTCTTACTGATGCTGAGGAAGCAATTAGGCTCAGAAACACTAATGTCAAGAGGCTCTTTCTGAGGATTTGCAGGTGGGTCTATGAAGGAGTCATTGATGATCGTTATGGTGAATGTTTCATTGCTGAGAACAAATCTCTTCAAAAGATGTTGTTTAAGGGTTTTCCCGATGCTTGTGATTCATTGATGGTTCTGAGGAATGGTGCACTGGACATAAAGACAGAGCCTTTAACTGGTTTGGCTGGATCTCAAGCTAACCCACTTGTCTCAGATTTGGGTGAAAATGAAGGTGGTGGTGTTGGTACTGAGTCTGATGATTTGGGGTTTTCTAAGTGGTTGAACAGCATACAGGGAAAACCAGTGAAAGACGCAGCTGATAGAAGTAATTACAGGGTACCATCTAAATCTAAAGGGGGGCGTGTTCTAAAAGCCATTGCCTCTTTATTGTCATATGATGATCATTTTGTAGATGCCACCTCCCACAAGGGTTGTCAGATTAGAAGGGAGACTGCTCATGGAGAAAGTGTATGTTGCAACAATGTGAGGGCTCTATTTGATGAGCTCCCAACTCCACACCTAGTTATGGAAATCACTCCTTTTCCTACTGGTTCTCTTACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

271

Amino Acids

29.81

Weight (kDa)

7.01

Isoelectric Point (pI)

42.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015770)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000009962
rosa_multiflora	Rmu_sc0000907.1_g000019 Rmu_sc0002176.1_g000021 Rmu_sc0002784.1_g000051 Rmu_ssc0000189.1_g000012
rosa_roxburghii	Rroxscaffold_1G00006240 Rroxscaffold_1G00027140 Rroxscaffold_1G00034790 Rroxscaffold_2G00096640 Rroxscaffold_2G00099810
rosa_rugosa	Rorug07G0130300 Rorug07G0130400
rosa_samantha	Rh4BG038300 Rh5CG419300 Rh6DG247100 Rh7BG237100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	255
Acc36I	ACCTGC	1 cut(s)	255
Acc65I	GGTACC	1 cut(s)	586
AccB1I	GGYRCC	1 cut(s)	586
AclWI	GGATC	1 cut(s)	445
AfaI	GTAC	2 cut(s)	496, 588
AfiI	CCNNNNNNNGG	4 cut(s)	16, 151, 425, 775
AgsI	TTSAA	3 cut(s)	41, 335, 532
AluBI	AGCT	6 cut(s)	29, 60, 175, 446, 566, 754
AluI	AGCT	6 cut(s)	29, 60, 175, 446, 566, 754
Alw21I	GWGCWC	4 cut(s)	31, 62, 400, 756
Alw26I	GTCTC	3 cut(s)	166, 463, 692
Alw44I	GTGCAC	1 cut(s)	396
AlwI	GGATC	1 cut(s)	445
ApaLI	GTGCAC	1 cut(s)	396
ApeKI	GCWGC	1 cut(s)	563
Asp718I	GGTACC	1 cut(s)	586
AsuHPI	GGTGA	3 cut(s)	67, 314, 482
BaeGI	GKGCMC	1 cut(s)	400
BanI	GGYRCC	1 cut(s)	586
BanII	GRGCYC	5 cut(s)	31, 62, 98, 742, 756
Bbv12I	GWGCWC	4 cut(s)	31, 62, 400, 756
BbvCI	CCTCAGC	1 cut(s)	207
BbvI	GCAGC	1 cut(s)	575
BccI	CCATC	5 cut(s)	10, 85, 173, 373, 598
BciVI	GTATCC	1 cut(s)	58
BclI	TGATCA	1 cut(s)	649
BcoDI	GTCTC	3 cut(s)	166, 463, 692
BfaI	CTAG	2 cut(s)	21, 770
BfuAI	ACCTGC	1 cut(s)	255
BfuI	GTATCC	1 cut(s)	58
BisI	GCNGC	1 cut(s)	564
BlsI	GCNGC	1 cut(s)	565
BmiI	GGNNCC	1 cut(s)	588
BmsI	GCATC	3 cut(s)	193, 352, 652
BplI	GAGNNNNNCTC	2 cut(s)	118, 150
Bpu10I	CCTNAGC	1 cut(s)	207
BpuEI	CTTGAG	1 cut(s)	426
BsaI	GGTCTC	1 cut(s)	166
BsaXI	ACNNNNNCTCC	2 cut(s)	702, 732
Bsc4I	CCNNNNNNNGG	4 cut(s)	16, 151, 425, 775
Bse1I	ACTGG	4 cut(s)	405, 430, 551, 802
Bse3DI	GCAATG	2 cut(s)	312, 624
BseGI	GGATG	1 cut(s)	96
BseLI	CCNNNNNNNGG	4 cut(s)	16, 151, 425, 775
BseMI	GCAATG	2 cut(s)	312, 624
BseMII	CTCAG	7 cut(s)	198, 238, 245, 309, 377, 474, 489
BseNI	ACTGG	4 cut(s)	405, 430, 551, 802
BseSI	GKGCMC	1 cut(s)	400
BseXI	GCAGC	1 cut(s)	575
BshNI	GGYRCC	1 cut(s)	586
BsiHKAI	GWGCWC	4 cut(s)	31, 62, 400, 756
BslI	CCNNNNNNNGG	4 cut(s)	16, 151, 425, 775
BsmAI	GTCTC	3 cut(s)	166, 463, 692
Bso31I	GGTCTC	1 cut(s)	166
Bsp1286I	GDGCHC	6 cut(s)	31, 62, 98, 400, 742, 756
Bsp143I	GATC	4 cut(s)	107, 292, 437, 649
BspCNI	CTCAG	7 cut(s)	199, 237, 246, 310, 378, 473, 490
BspLI	GGNNCC	1 cut(s)	588
BspMI	ACCTGC	1 cut(s)	255
BspPI	GGATC	1 cut(s)	445
BspT107I	GGYRCC	1 cut(s)	586
BspTNI	GGTCTC	1 cut(s)	166
BsrDI	GCAATG	2 cut(s)	312, 624
BsrI	ACTGG	4 cut(s)	405, 430, 551, 802
BssMI	GATC	4 cut(s)	107, 292, 437, 649
Bst6I	CTCTTC	1 cut(s)	336
BstDEI	CTNAG	8 cut(s)	207, 224, 254, 318, 386, 460, 498, 522
BstF5I	GGATG	1 cut(s)	96
BstKTI	GATC	4 cut(s)	110, 295, 440, 652
BstMAI	GTCTC	3 cut(s)	166, 463, 692
BstMBI	GATC	4 cut(s)	107, 292, 437, 649
BstMWI	GCNNNNNNNGC	2 cut(s)	26, 212
BstNSI	RCATGY	1 cut(s)	194
BstSLI	GKGCMC	1 cut(s)	400
BstV1I	GCAGC	1 cut(s)	575
BstX2I	RGATCY	1 cut(s)	437
BstYI	RGATCY	1 cut(s)	437
BsuI	GTATCC	1 cut(s)	58
BtsCI	GGATG	1 cut(s)	96
BtsIMutI	CAGTG	2 cut(s)	398, 558
BveI	ACCTGC	1 cut(s)	255
CseI	GACGC	1 cut(s)	569
Csp6I	GTAC	2 cut(s)	495, 587
CspCI	CAANNNNNGTGG	2 cut(s)	662, 697
CviAII	CATG	2 cut(s)	191, 707
CviQI	GTAC	2 cut(s)	495, 587
DdeI	CTNAG	8 cut(s)	207, 224, 254, 318, 386, 460, 498, 522
DpnI	GATC	4 cut(s)	109, 294, 439, 651
DpnII	GATC	4 cut(s)	107, 292, 437, 649
Eam1104I	CTCTTC	1 cut(s)	336
EarI	CTCTTC	1 cut(s)	336
Ecl136II	GAGCTC	3 cut(s)	29, 60, 754
Eco24I	GRGCYC	5 cut(s)	31, 62, 98, 742, 756
Eco31I	GGTCTC	1 cut(s)	166
Eco53kI	GAGCTC	3 cut(s)	29, 60, 754
EcoICRI	GAGCTC	3 cut(s)	29, 60, 754
EcoT38I	GRGCYC	5 cut(s)	31, 62, 98, 742, 756
FaeI	CATG	2 cut(s)	194, 710
FalI	AAGNNNNNCTT	2 cut(s)	233, 265
FatI	CATG	2 cut(s)	190, 706
FauNDI	CATATG	1 cut(s)	643
FbaI	TGATCA	1 cut(s)	649
Fnu4HI	GCNGC	1 cut(s)	564
FokI	GGATG	1 cut(s)	103
FriOI	GRGCYC	5 cut(s)	31, 62, 98, 742, 756
Fsp4HI	GCNGC	1 cut(s)	564
FspBI	CTAG	2 cut(s)	21, 770
GluI	GCNGC	1 cut(s)	564
HgaI	GACGC	1 cut(s)	569
Hin1II	CATG	2 cut(s)	194, 710
HinfI	GANTC	3 cut(s)	282, 371, 500
HphI	GGTGA	3 cut(s)	67, 314, 482
Hpy166II	GTNNAC	1 cut(s)	398
Hpy188I	TCNGA	7 cut(s)	64, 227, 255, 387, 463, 505, 687
Hpy188III	TCNNGA	3 cut(s)	137, 241, 359
Hpy8I	GTNNAC	1 cut(s)	398
Hpy99I	CGWCG	1 cut(s)	108
HpyAV	CCTTC	4 cut(s)	145, 272, 473, 687
HpyCH4V	TGCA	3 cut(s)	264, 398, 726
HpyF10VI	GCNNNNNNNGC	2 cut(s)	26, 212
HpyF3I	CTNAG	8 cut(s)	207, 224, 254, 318, 386, 460, 498, 522
Hsp92II	CATG	2 cut(s)	194, 710
KpnI	GGTACC	1 cut(s)	590
Ksp22I	TGATCA	1 cut(s)	649
Kzo9I	GATC	4 cut(s)	107, 292, 437, 649
LmnI	GCTCC	3 cut(s)	26, 172, 759
LpnPI	CCDG	9 cut(s)	122, 250, 386, 411, 420, 527, 564, 568, 783
Lsp1109I	GCAGC	1 cut(s)	575
LweI	GCATC	3 cut(s)	193, 352, 652
MaeI	CTAG	2 cut(s)	21, 770
MalI	GATC	4 cut(s)	109, 294, 439, 651
MboI	GATC	4 cut(s)	107, 292, 437, 649
MboII	GAAGA	1 cut(s)	323
MflI	RGATCY	1 cut(s)	437
MhlI	GDGCHC	6 cut(s)	31, 62, 98, 400, 742, 756
MluCI	AATT	6 cut(s)	32, 41, 85, 181, 216, 577
MlyI	GAGTC	2 cut(s)	291, 509
MnlI	CCTC	9 cut(s)	75, 124, 202, 237, 249, 381, 640, 679, 729
MseI	TTAA	2 cut(s)	348, 422
MslI	CAYNNNNRTG	1 cut(s)	122
MspA1I	CMGCKG	1 cut(s)	566
MwoI	GCNNNNNNNGC	2 cut(s)	26, 212
NdeI	CATATG	1 cut(s)	643
NdeII	GATC	4 cut(s)	107, 292, 437, 649
NlaIII	CATG	2 cut(s)	194, 710
NlaIV	GGNNCC	1 cut(s)	588
NspI	RCATGY	1 cut(s)	194
PaqCI	CACCTGC	1 cut(s)	255
PfeI	GAWTC	1 cut(s)	371
PkrI	GCNGC	1 cut(s)	565
PleI	GAGTC	2 cut(s)	290, 508
PpsI	GAGTC	2 cut(s)	290, 508
Psp124BI	GAGCTC	3 cut(s)	31, 62, 756
PspN4I	GGNNCC	1 cut(s)	588
PsuI	RGATCY	1 cut(s)	437
PvuII	CAGCTG	1 cut(s)	566
RsaI	GTAC	2 cut(s)	496, 588
RsaNI	GTAC	2 cut(s)	495, 587
RseI	CAYNNNNRTG	1 cut(s)	122
SacI	GAGCTC	3 cut(s)	31, 62, 756
SaqAI	TTAA	2 cut(s)	348, 422
SatI	GCNGC	1 cut(s)	564
Sau3AI	GATC	4 cut(s)	107, 292, 437, 649
SchI	GAGTC	2 cut(s)	291, 509
SduI	GDGCHC	6 cut(s)	31, 62, 98, 400, 742, 756
SfaNI	GCATC	3 cut(s)	193, 352, 652
SmiMI	CAYNNNNRTG	1 cut(s)	122
SmlI	CTYRAG	1 cut(s)	441
SmoI	CTYRAG	1 cut(s)	441
Sse9I	AATT	6 cut(s)	32, 41, 85, 181, 216, 577
SspMI	CTAG	2 cut(s)	21, 770
SstI	GAGCTC	3 cut(s)	31, 62, 756
TaqI	TCGA	1 cut(s)	103
TasI	AATT	6 cut(s)	32, 41, 85, 181, 216, 577
TfiI	GAWTC	1 cut(s)	371
Tru1I	TTAA	2 cut(s)	348, 422
Tru9I	TTAA	2 cut(s)	348, 422
TscAI	CASTG	2 cut(s)	405, 558
TseI	GCWGC	1 cut(s)	563
TspDTI	ATGAA	5 cut(s)	25, 291, 301, 363, 492
TspRI	CASTG	2 cut(s)	405, 558
VneI	GTGCAC	1 cut(s)	396
XceI	RCATGY	1 cut(s)	194
XspI	CTAG	2 cut(s)	21, 770

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.