Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0015770

Physical Location & Seq

Genomic Coordinates Forward (+)

34187227 .. 34207714

Gene Structure 20488 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00027140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1755 bp

ATGAAAGAAGGGATTAAATCTTTCGGTTGGAAGAAAAGATTCGAGAGAGAAGTATTGAAGATTGGGGAGGAAAAGATCGGAGATTGGAGAAGAGGAAGGACTGGAGGGTTGGGAGAGAAAGGCAAAAGCTCGAAGAAATTCTCTTCCTTTGGAGTGAACAAAAAGATTCGAGAGAGAAGTATTGAAGATTGGGGAGGAAAAGATCGGAGATTGGAGAAGAGGAAGGACCGGAGGGTTGGGAGAGAAAGGCAAAAGCTCGAAGAAATTCTCTTCCTTTGGAGTGAACGTACTCCTACTCATCACTACAAACAAGTTGTAAGAAGAGCCGAAATGGGAGCTTTGGGACAGCCAAGGCCTTATTGGCTCATTTCGGTGTTTTATGCACCCTCCACACCATTACAAGTCACCACCACCCCGCCACCGCCGGAGCATGTGATACATCCTCCGTATCACTACAAGTCTCCCCCGCCACCCTCACCTTCACCTCCACATCCTTATGTCTACAAGTCTCCACCACCACCATCATCTTCACCGCCACCTCCCTATGTATACAAGTCTCCACCACCTCCATCACCTTCACCTCCTCCTCCCTATGTCTACAAGTCTCCACCACCCCCATCACCTTCACCACCACCTCCCTATGTCTACAAGTCTCCACCACCCCCATCACCTTCACCACCACCACCATACATTTATAAATCACCACCACCACCATCTCCATCACCTCCTCCTCCTTATGTCTACAAGTCTCCACCTCCACCATCACCGTCACCGCCTCCACCATATGTCTACAAGTCCCCACCTCCTCCTTCTCCATCACCGCCACCTCCTTCTGTTTACAAATCTCCACCACCACCTTTTCCATCACCGCCTCCACCATATGTCTACAAGTCCCCACCTCCTCCTTCTCCATCACCGCCACCTCCTTATGTTTACAAATCTCCACCACCACCTTCTCCATCACCGCCTCCACCATATGTCTACAAGTCCCCACCTCCTCCTTCTCCATCACCGCCACCTCGTTATGTTTACAAATCTCCACCACCACCGTCTCCATCACCGCCTCCACCATACGTCTACAAGTCCCCACCTCCTCCATCTCCATCACCGCCTCCTCCATACGTCTACAAGTCACCACCACCTCCTTCCCCATCACCCCCTCCTCCCTATATTTATAAATCACCTCCACCACCCTCACCGTCACCTCCTCCTCCTTATGTATACAAGTCCCCACCTCCACCTTCCCCATCGCCGCCACCTCCATATGTCTATAAGTCTCCCCCTCCACCATCTCCCTCACCTCCTCCTCCTTATCTCTACAAGTCTCCTCCTCCCCCATCTCACTCTCCACCACCATACTACTACAACTCAACATTCACAAAGAGCTCGACTCGGACCCCCAACAATCTCCTCTACGGCGTCGCCACCAATCCCGTGGTTCCCGACTTCCGTGATGTGTTGATGTTATCGAAGGAGCTTGGTAATTACGTACATGCTCTTACCGATGCCGAGGAAGCAATTAGGCTCGAAACACTAATGTCAAGGTGGGTCTATGAAGGAGTCATTGATGATCGTTATGGTGAATGTTTCATTGCTGAGAACAAATCTCTTCAAAAGATGCTGTTTAAGGGTTTTCCCGATGCTTGTGATTCATTGATGGTTCCGAGGAATGGTGCACTGGACATAAAGACAGAGCCTTTAGTAAGCACGTTTAGTTGCTTCAAATTGGAGACACTTCTCCTTGCACTCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0000278 GO:0000280 GO:0000923 GO:0000930 GO:0003674 GO:0005198 GO:0005200 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005654 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0005874 GO:0005881 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0007020 GO:0007049 GO:0007051 GO:0007052 GO:0007098 GO:0007275 GO:0008092 GO:0008104 GO:0008150 GO:0008275 GO:0009987 GO:0010638 GO:0010968 GO:0012505 GO:0015630 GO:0015631 GO:0016043 GO:0022402 GO:0022414 GO:0022607 GO:0030863 GO:0030981 GO:0031023 GO:0031109 GO:0031110 GO:0031112 GO:0031113 GO:0031116 GO:0031122 GO:0031334 GO:0031503 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032153 GO:0032155 GO:0032271 GO:0032273 GO:0032501 GO:0032502 GO:0032886 GO:0032991 GO:0033036 GO:0033043 GO:0033566 GO:0034613 GO:0034622 GO:0034629 GO:0043015 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044450 GO:0044464 GO:0046785 GO:0048229 GO:0048285 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051179 GO:0051225 GO:0051258 GO:0051298 GO:0051321 GO:0051415 GO:0051418 GO:0051493 GO:0051495 GO:0051641 GO:0055028 GO:0065003 GO:0065007 GO:0070013 GO:0070507 GO:0070727 GO:0070925 GO:0071840 GO:0071944 GO:0090063 GO:0090307 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0140014 GO:1902850 GO:1902903 GO:1902905 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Spc97_Spc98

Protein Analysis

584

Amino Acids

64.67

Weight (kDa)

9.66

Isoelectric Point (pI)

119.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015770)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000009962
rosa_multiflora	Rmu_sc0000907.1_g000019 Rmu_sc0002176.1_g000021 Rmu_sc0002784.1_g000051 Rmu_ssc0000189.1_g000012
rosa_roxburghii	Rroxscaffold_1G00006240 Rroxscaffold_1G00027140 Rroxscaffold_1G00034790 Rroxscaffold_2G00096640 Rroxscaffold_2G00099810
rosa_rugosa	Rorug07G0130300 Rorug07G0130400
rosa_samantha	Rh4BG038300 Rh5CG419300 Rh6DG247100 Rh7BG237100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	696, 1176
AcsI	RAATTY	2 cut(s)	137, 264
AcyI	GRCGYC	1 cut(s)	1419
AfaI	GTAC	2 cut(s)	289, 1491
AfiI	CCNNNNNNNGG	1 cut(s)	1670
AgsI	TTSAA	4 cut(s)	58, 185, 1613, 1723
AluBI	AGCT	5 cut(s)	129, 256, 338, 1386, 1477
AluI	AGCT	5 cut(s)	129, 256, 338, 1386, 1477
Alw21I	GWGCWC	2 cut(s)	1388, 1678
Alw44I	GTGCAC	1 cut(s)	1674
AoxI	GGCC	1 cut(s)	353
ApaLI	GTGCAC	1 cut(s)	1674
ApoI	RAATTY	2 cut(s)	137, 264
Asp700I	GAANNNNTTC	3 cut(s)	38, 137, 264
AspS9I	GGNCC	2 cut(s)	226, 1395
AvaII	GGWCC	2 cut(s)	226, 1395
BaeGI	GKGCMC	1 cut(s)	1678
BanII	GRGCYC	1 cut(s)	1388
Bbv12I	GWGCWC	2 cut(s)	1388, 1678
BceAI	ACGGC	1 cut(s)	1432
BglI	GCCNNNNNGGC	1 cut(s)	361
BisI	GCNGC	1 cut(s)	1253
BlsI	GCNGC	1 cut(s)	1254
Bme18I	GGWCC	2 cut(s)	226, 1395
BmgT120I	GGNCC	2 cut(s)	226, 1395
BmiI	GGNNCC	3 cut(s)	1397, 1440, 1662
BmsI	GCATC	3 cut(s)	1495, 1608, 1630
BplI	GAGNNNNNCTC	2 cut(s)	1375, 1407
BpmI	CTGGAG	1 cut(s)	123
BsaAI	YACGTR	1 cut(s)	1489
BsaHI	GRCGYC	1 cut(s)	1419
BsaJI	CCNNGG	4 cut(s)	350, 1434, 1509, 1664
BsaWI	WCCGGW	1 cut(s)	228
BsaXI	ACNNNNNCTCC	2 cut(s)	271, 301
Bsc4I	CCNNNNNNNGG	1 cut(s)	1670
Bse1I	ACTGG	2 cut(s)	106, 1683
Bse3DI	GCAATG	1 cut(s)	1590
BseDI	CCNNGG	4 cut(s)	350, 1434, 1509, 1664
BseGI	GGATG	2 cut(s)	439, 490
BseLI	CCNNNNNNNGG	1 cut(s)	1670
BseMI	GCAATG	1 cut(s)	1590
BseMII	CTCAG	1 cut(s)	1587
BseNI	ACTGG	2 cut(s)	106, 1683
BseSI	GKGCMC	1 cut(s)	1678
BshFI	GGCC	1 cut(s)	355
BsiHKAI	GWGCWC	2 cut(s)	1388, 1678
BsiSI	CCGG	2 cut(s)	229, 425
BslFI	GGGAC	6 cut(s)	357, 781, 877, 973, 1069, 1213
BslI	CCNNNNNNNGG	1 cut(s)	1670
BsmBI	CGTCTC	1 cut(s)	1056
BsmFI	GGGAC	6 cut(s)	357, 781, 877, 973, 1069, 1213
BsnI	GGCC	1 cut(s)	355
Bsp1286I	GDGCHC	2 cut(s)	1388, 1678
Bsp143I	GATC	3 cut(s)	75, 202, 1570
BspANI	GGCC	1 cut(s)	355
BspCNI	CTCAG	1 cut(s)	1588
BspLI	GGNNCC	3 cut(s)	1397, 1440, 1662
BspQI	GCTCTTC	1 cut(s)	316
BsrDI	GCAATG	1 cut(s)	1590
BsrI	ACTGG	2 cut(s)	106, 1683
BssECI	CCNNGG	4 cut(s)	350, 1434, 1509, 1664
BssMI	GATC	3 cut(s)	75, 202, 1570
BssNAI	GTATAC	2 cut(s)	550, 1222
BssNI	GRCGYC	1 cut(s)	1419
BssT1I	CCWWGG	1 cut(s)	350
Bst1107I	GTATAC	2 cut(s)	550, 1222
Bst4CI	ACNGT	3 cut(s)	768, 1050, 1200
Bst6I	CTCTTC	6 cut(s)	85, 148, 212, 275, 316, 1614
BstACI	GRCGYC	1 cut(s)	1419
BstBAI	YACGTR	1 cut(s)	1489
BstDEI	CTNAG	1 cut(s)	1596
BstDSI	CCRYGG	1 cut(s)	1434
BstF5I	GGATG	2 cut(s)	439, 490
BstKTI	GATC	3 cut(s)	78, 205, 1573
BstMBI	GATC	3 cut(s)	75, 202, 1570
BstMWI	GCNNNNNNNGC	2 cut(s)	361, 1514
BstNSI	RCATGY	2 cut(s)	434, 1496
BstSLI	GKGCMC	1 cut(s)	1678
BstSNI	TACGTA	1 cut(s)	1489
BstXI	CCANNNNNNTGG	1 cut(s)	1435
BstZ17I	GTATAC	2 cut(s)	550, 1222
BsuRI	GGCC	1 cut(s)	355
BtgI	CCRYGG	1 cut(s)	1434
BtgZI	GCGATG	1 cut(s)	1233
BtsCI	GGATG	2 cut(s)	439, 490
BtsIMutI	CAGTG	1 cut(s)	1676
Cfr13I	GGNCC	2 cut(s)	226, 1395
CseI	GACGC	1 cut(s)	1408
Csp6I	GTAC	2 cut(s)	288, 1490
CviAII	CATG	2 cut(s)	431, 1493
CviQI	GTAC	2 cut(s)	288, 1490
DdeI	CTNAG	1 cut(s)	1596
DpnI	GATC	3 cut(s)	77, 204, 1572
DpnII	GATC	3 cut(s)	75, 202, 1570
Eam1104I	CTCTTC	6 cut(s)	85, 148, 212, 275, 316, 1614
EarI	CTCTTC	6 cut(s)	85, 148, 212, 275, 316, 1614
Ecl136II	GAGCTC	1 cut(s)	1386
Eco105I	TACGTA	1 cut(s)	1489
Eco130I	CCWWGG	1 cut(s)	350
Eco147I	AGGCCT	1 cut(s)	355
Eco24I	GRGCYC	1 cut(s)	1388
Eco47I	GGWCC	2 cut(s)	226, 1395
Eco53kI	GAGCTC	1 cut(s)	1386
EcoICRI	GAGCTC	1 cut(s)	1386
EcoT14I	CCWWGG	1 cut(s)	350
EcoT38I	GRGCYC	1 cut(s)	1388
ErhI	CCWWGG	1 cut(s)	350
Esp3I	CGTCTC	1 cut(s)	1056
FaeI	CATG	2 cut(s)	434, 1496
FaqI	GGGAC	6 cut(s)	357, 781, 877, 973, 1069, 1213
FatI	CATG	2 cut(s)	430, 1492
FauI	CCCGC	2 cut(s)	423, 474
FauNDI	CATATG	4 cut(s)	784, 880, 976, 1264
Fnu4HI	GCNGC	1 cut(s)	1253
FokI	GGATG	2 cut(s)	426, 477
FriOI	GRGCYC	1 cut(s)	1388
Fsp4HI	GCNGC	1 cut(s)	1253
GluI	GCNGC	1 cut(s)	1253
GsuI	CTGGAG	1 cut(s)	123
HaeIII	GGCC	1 cut(s)	355
HapII	CCGG	2 cut(s)	229, 425
HgaI	GACGC	1 cut(s)	1408
Hin1I	GRCGYC	1 cut(s)	1419
Hin1II	CATG	2 cut(s)	434, 1496
HinfI	GANTC	5 cut(s)	39, 166, 1390, 1560, 1649
HpaII	CCGG	2 cut(s)	229, 425
Hpy188I	TCNGA	4 cut(s)	80, 207, 1395, 1665
Hpy188III	TCNNGA	4 cut(s)	43, 170, 1442, 1637
Hpy99I	CGWCG	1 cut(s)	1424
HpyCH4III	ACNGT	3 cut(s)	768, 1050, 1200
HpyCH4IV	ACGT	5 cut(s)	286, 1074, 1122, 1488, 1709
HpyCH4V	TGCA	3 cut(s)	383, 1676, 1745
HpyF10VI	GCNNNNNNNGC	2 cut(s)	361, 1514
HpyF3I	CTNAG	1 cut(s)	1596
HpySE526I	ACGT	5 cut(s)	286, 1074, 1122, 1488, 1709
Hsp92I	GRCGYC	1 cut(s)	1419
Hsp92II	CATG	2 cut(s)	434, 1496
Kzo9I	GATC	3 cut(s)	75, 202, 1570
LguI	GCTCTTC	1 cut(s)	316
LmnI	GCTCC	3 cut(s)	335, 427, 1474
LpnPI	CCDG	4 cut(s)	87, 242, 438, 1664
LweI	GCATC	3 cut(s)	1495, 1608, 1630
MaeII	ACGT	5 cut(s)	286, 1074, 1122, 1488, 1709
MaeIII	GTNAC	4 cut(s)	403, 768, 1131, 1200
MalI	GATC	3 cut(s)	77, 204, 1572
MboI	GATC	3 cut(s)	75, 202, 1570
MhlI	GDGCHC	2 cut(s)	1388, 1678
MluCI	AATT	5 cut(s)	137, 264, 1483, 1518, 1724
MlyI	GAGTC	2 cut(s)	1384, 1569
MmeI	TCCRAC	1 cut(s)	8
MroXI	GAANNNNTTC	3 cut(s)	38, 137, 264
MseI	TTAA	3 cut(s)	15, 1626, 1753
MslI	CAYNNNNRTG	2 cut(s)	371, 495
MspI	CCGG	2 cut(s)	229, 425
MwoI	GCNNNNNNNGC	2 cut(s)	361, 1514
NdeI	CATATG	4 cut(s)	784, 880, 976, 1264
NdeII	GATC	3 cut(s)	75, 202, 1570
NlaIII	CATG	2 cut(s)	434, 1496
NlaIV	GGNNCC	3 cut(s)	1397, 1440, 1662
NmeAIII	GCCGAG	1 cut(s)	1534
NmuCI	GTSAC	4 cut(s)	403, 768, 1131, 1200
NspI	RCATGY	2 cut(s)	434, 1496
PceI	AGGCCT	1 cut(s)	355
PciSI	GCTCTTC	1 cut(s)	316
PdmI	GAANNNNTTC	3 cut(s)	38, 137, 264
PfeI	GAWTC	3 cut(s)	39, 166, 1649
PkrI	GCNGC	1 cut(s)	1254
PleI	GAGTC	2 cut(s)	1384, 1568
PpsI	GAGTC	2 cut(s)	1384, 1568
Ppu21I	YACGTR	1 cut(s)	1489
PsiI	TTATAA	2 cut(s)	696, 1176
Psp124BI	GAGCTC	1 cut(s)	1388
PspN4I	GGNNCC	3 cut(s)	1397, 1440, 1662
PspPI	GGNCC	2 cut(s)	226, 1395
RsaI	GTAC	2 cut(s)	289, 1491
RsaNI	GTAC	2 cut(s)	288, 1490
RseI	CAYNNNNRTG	2 cut(s)	371, 495
SacI	GAGCTC	1 cut(s)	1388
SapI	GCTCTTC	1 cut(s)	316
SaqAI	TTAA	3 cut(s)	15, 1626, 1753
SatI	GCNGC	1 cut(s)	1253
Sau3AI	GATC	3 cut(s)	75, 202, 1570
Sau96I	GGNCC	2 cut(s)	226, 1395
SchI	GAGTC	2 cut(s)	1384, 1569
SduI	GDGCHC	2 cut(s)	1388, 1678
SfaNI	GCATC	3 cut(s)	1495, 1608, 1630
SinI	GGWCC	2 cut(s)	226, 1395
SmiMI	CAYNNNNRTG	2 cut(s)	371, 495
SnaBI	TACGTA	1 cut(s)	1489
Sse9I	AATT	5 cut(s)	137, 264, 1483, 1518, 1724
SseBI	AGGCCT	1 cut(s)	355
SstI	GAGCTC	1 cut(s)	1388
StuI	AGGCCT	1 cut(s)	355
StyI	CCWWGG	1 cut(s)	350
TaaI	ACNGT	3 cut(s)	768, 1050, 1200
TaiI	ACGT	5 cut(s)	289, 1077, 1125, 1491, 1712
TaqI	TCGA	7 cut(s)	42, 131, 169, 258, 1388, 1469, 1527
TasI	AATT	5 cut(s)	137, 264, 1483, 1518, 1724
TauI	GCSGC	1 cut(s)	1255
TfiI	GAWTC	3 cut(s)	39, 166, 1649
Tru1I	TTAA	3 cut(s)	15, 1626, 1753
Tru9I	TTAA	3 cut(s)	15, 1626, 1753
TscAI	CASTG	1 cut(s)	1683
TseFI	GTSAC	4 cut(s)	403, 768, 1131, 1200
Tsp45I	GTSAC	4 cut(s)	403, 768, 1131, 1200
TspDTI	ATGAA	4 cut(s)	17, 1569, 1579, 1641
TspGWI	ACGGA	2 cut(s)	435, 1439
TspRI	CASTG	1 cut(s)	1683
VneI	GTGCAC	1 cut(s)	1674
VpaK11BI	GGWCC	2 cut(s)	226, 1395
XapI	RAATTY	2 cut(s)	137, 264
XceI	RCATGY	2 cut(s)	434, 1496
XcmI	CCANNNNNNNNNTGG	2 cut(s)	357, 1432
XmnI	GAANNNNTTC	3 cut(s)	38, 137, 264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.