Rmu_sc0000907.1_g000019

TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000907.1
OG0015770
Physical Location & Seq
Forward (+)
81389 .. 81664
276 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000907.1_g000019.1.cds

Sequence Viewer

Length: 276 bp
atgtgtctgactgagactttggatgagatggttcagaacgggactctcagtcctgagcttgccattcaggttctagttcagttcgaaaaaggagacccggccataactcctccgtccagccatctctcggcggcgcaccacctgcgttcgactcctcttctcagcgccaacatgcctatggtggtggaccatacatgcacacatagtggggagagattcgaaacccaaaagcctgaagcttttccggcgactctggtcacaattgtcgatgcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000428 GO:0003674 GO:0003712 GO:0003713 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005672 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0016591 GO:0017025 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022607 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051090 GO:0051091 GO:0051123 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0055029 GO:0060255 GO:0061695 GO:0065003 GO:0065004 GO:0065007 GO:0065009 GO:0070013 GO:0070897 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 ko05203 map03022 map05203
Pfam Domains
Protein Families
TFIIA_gamma_C TFIIA_gamma_N

Protein Analysis

91

Amino Acids

9.85

Weight (kDa)

4.9

Isoelectric Point (pI)

35.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 150
Acc36I ACCTGC 1 cut(s) 150
AciI CCGC 1 cut(s) 131
AcoI YGGCCR 1 cut(s) 99
AcuI CTGAAG 1 cut(s) 255
AdeI CACNNNGTG 1 cut(s) 206
AfiI CCNNNNNNNGG 1 cut(s) 127
AhdI GACNNNNNGTC 1 cut(s) 48
AluBI AGCT 2 cut(s) 58, 239
AluI AGCT 2 cut(s) 58, 239
Alw26I GTCTC 2 cut(s) 8, 87
AoxI GGCC 1 cut(s) 99
ArsI GACNNNNNNTTYG 1 cut(s) 33
Asp700I GAANNNNTTC 1 cut(s) 240
AspLEI GCGC 2 cut(s) 136, 167
AspS9I GGNCC 1 cut(s) 187
AsuC2I CCSGG 1 cut(s) 98
AsuII TTCGAA 2 cut(s) 84, 219
AvaII GGWCC 1 cut(s) 187
BccI CCATC 2 cut(s) 22, 129
BcnI CCSGG 1 cut(s) 98
BcoDI GTCTC 2 cut(s) 8, 87
BfaI CTAG 1 cut(s) 74
BfoI RGCGCY 1 cut(s) 168
BfuAI ACCTGC 1 cut(s) 150
BisI GCNGC 1 cut(s) 132
BlsI GCNGC 1 cut(s) 133
Bme1390I CCNGG 1 cut(s) 98
Bme18I GGWCC 1 cut(s) 187
BmeRI GACNNNNNGTC 1 cut(s) 48
BmgT120I GGNCC 1 cut(s) 187
BmrFI CCNGG 1 cut(s) 98
BmsI GCATC 1 cut(s) 259
BoxI GACNNNNGTC 1 cut(s) 254
Bpu10I CCTNAGC 1 cut(s) 54
Bpu14I TTCGAA 2 cut(s) 84, 219
BpuMI CCSGG 1 cut(s) 98
BsaI GGTCTC 1 cut(s) 87
Bsc4I CCNNNNNNNGG 1 cut(s) 127
BseGI GGATG 1 cut(s) 28
BseLI CCNNNNNNNGG 1 cut(s) 127
BseMII CTCAG 3 cut(s) 45, 61, 175
BseRI GAGGAG 2 cut(s) 99, 144
BshFI GGCC 1 cut(s) 101
BsiSI CCGG 2 cut(s) 98, 245
BslFI GGGAC 1 cut(s) 55
BslI CCNNNNNNNGG 1 cut(s) 127
BsmAI GTCTC 2 cut(s) 8, 87
BsmFI GGGAC 1 cut(s) 55
BsnI GGCC 1 cut(s) 101
Bso31I GGTCTC 1 cut(s) 87
Bsp119I TTCGAA 2 cut(s) 84, 219
BspACI CCGC 1 cut(s) 131
BspANI GGCC 1 cut(s) 101
BspCNI CTCAG 4 cut(s) 4, 46, 60, 174
BspMI ACCTGC 1 cut(s) 150
BspT104I TTCGAA 2 cut(s) 84, 219
BspTNI GGTCTC 1 cut(s) 87
Bst6I CTCTTC 1 cut(s) 162
BstAPI GCANNNNNTGC 1 cut(s) 142
BstBI TTCGAA 2 cut(s) 84, 219
BstC8I GCNNGC 1 cut(s) 60
BstDEI CTNAG 4 cut(s) 12, 47, 54, 161
BstF5I GGATG 1 cut(s) 28
BstH2I RGCGCY 1 cut(s) 168
BstHHI GCGC 2 cut(s) 136, 167
BstMAI GTCTC 2 cut(s) 8, 87
BstMWI GCNNNNNNNGC 2 cut(s) 142, 245
BstNSI RCATGY 2 cut(s) 175, 198
BstPAI GACNNNNGTC 1 cut(s) 254
BstSCI CCNGG 1 cut(s) 96
BsuRI GGCC 1 cut(s) 101
BtsCI GGATG 1 cut(s) 28
BveI ACCTGC 1 cut(s) 150
Cac8I GCNNGC 1 cut(s) 60
CfoI GCGC 2 cut(s) 136, 167
Cfr13I GGNCC 1 cut(s) 187
CviAII CATG 2 cut(s) 172, 195
CviJI RGCY 5 cut(s) 58, 101, 120, 232, 239
CviKI_1 RGCY 5 cut(s) 58, 101, 120, 232, 239
DdeI CTNAG 4 cut(s) 12, 47, 54, 161
DraIII CACNNNGTG 1 cut(s) 206
DriI GACNNNNNGTC 1 cut(s) 48
EaeI YGGCCR 1 cut(s) 99
Eam1104I CTCTTC 1 cut(s) 162
Eam1105I GACNNNNNGTC 1 cut(s) 48
EarI CTCTTC 1 cut(s) 162
Eco31I GGTCTC 1 cut(s) 87
Eco47I GGWCC 1 cut(s) 187
Eco57I CTGAAG 1 cut(s) 255
FaeI CATG 2 cut(s) 175, 198
FaiI YATR 6 cut(s) 104, 173, 179, 192, 196, 204
FaqI GGGAC 1 cut(s) 55
FatI CATG 2 cut(s) 171, 194
Fnu4HI GCNGC 1 cut(s) 132
FokI GGATG 1 cut(s) 35
Fsp4HI GCNGC 1 cut(s) 132
FspBI CTAG 1 cut(s) 74
GlaI GCGC 2 cut(s) 135, 166
GluI GCNGC 1 cut(s) 132
HaeII RGCGCY 1 cut(s) 168
HaeIII GGCC 1 cut(s) 101
HapII CCGG 2 cut(s) 98, 245
HhaI GCGC 2 cut(s) 136, 167
Hin1II CATG 2 cut(s) 175, 198
Hin6I GCGC 2 cut(s) 134, 165
HinP1I GCGC 2 cut(s) 134, 165
HindIII AAGCTT 1 cut(s) 237
HinfI GANTC 4 cut(s) 43, 151, 216, 250
HpaII CCGG 2 cut(s) 98, 245
Hpy166II GTNNAC 1 cut(s) 187
Hpy188I TCNGA 2 cut(s) 9, 36
Hpy188III TCNNGA 1 cut(s) 53
Hpy8I GTNNAC 1 cut(s) 187
HpyCH4V TGCA 1 cut(s) 198
HpyF10VI GCNNNNNNNGC 2 cut(s) 142, 245
HpyF3I CTNAG 4 cut(s) 12, 47, 54, 161
Hsp92II CATG 2 cut(s) 175, 198
HspAI GCGC 2 cut(s) 134, 165
LpnPI CCDG 8 cut(s) 53, 66, 111, 130, 155, 239, 246, 258
LweI GCATC 1 cut(s) 259
MaeI CTAG 1 cut(s) 74
MaeIII GTNAC 1 cut(s) 256
MboII GAAGA 1 cut(s) 149
MfeI CAATTG 1 cut(s) 261
MluCI AATT 1 cut(s) 261
MlyI GAGTC 3 cut(s) 37, 145, 244
MnlI CCTC 2 cut(s) 120, 165
MroXI GAANNNNTTC 1 cut(s) 240
MseI TTAA 1 cut(s) 274
MslI CAYNNNNRTG 1 cut(s) 176
MspI CCGG 2 cut(s) 98, 245
MspR9I CCNGG 1 cut(s) 98
MunI CAATTG 1 cut(s) 261
MwoI GCNNNNNNNGC 2 cut(s) 142, 245
NciI CCSGG 1 cut(s) 98
NlaIII CATG 2 cut(s) 175, 198
NmeAIII GCCGAG 1 cut(s) 107
NmuCI GTSAC 1 cut(s) 256
NspI RCATGY 2 cut(s) 175, 198
NspV TTCGAA 2 cut(s) 84, 219
PaqCI CACCTGC 1 cut(s) 150
PdmI GAANNNNTTC 1 cut(s) 240
PfeI GAWTC 1 cut(s) 216
PkrI GCNGC 1 cut(s) 133
PleI GAGTC 3 cut(s) 37, 145, 244
PpsI GAGTC 3 cut(s) 37, 145, 244
PshAI GACNNNNGTC 1 cut(s) 254
PspPI GGNCC 1 cut(s) 187
RseI CAYNNNNRTG 1 cut(s) 176
SaqAI TTAA 1 cut(s) 274
SatI GCNGC 1 cut(s) 132
Sau96I GGNCC 1 cut(s) 187
SchI GAGTC 3 cut(s) 37, 145, 244
ScrFI CCNGG 1 cut(s) 98
SetI ASST 4 cut(s) 60, 72, 144, 241
SfaNI GCATC 1 cut(s) 259
SfuI TTCGAA 2 cut(s) 84, 219
SinI GGWCC 1 cut(s) 187
SmiMI CAYNNNNRTG 1 cut(s) 176
Sse9I AATT 1 cut(s) 261
SsiI CCGC 1 cut(s) 131
SspMI CTAG 1 cut(s) 74
StyD4I CCNGG 1 cut(s) 96
TaqI TCGA 4 cut(s) 84, 149, 219, 267
TasI AATT 1 cut(s) 261
TauI GCSGC 1 cut(s) 134
TfiI GAWTC 1 cut(s) 216
Tru1I TTAA 1 cut(s) 274
Tru9I TTAA 1 cut(s) 274
TseFI GTSAC 1 cut(s) 256
Tsp45I GTSAC 1 cut(s) 256
TspGWI ACGGA 1 cut(s) 102
VpaK11BI GGWCC 1 cut(s) 187
XceI RCATGY 2 cut(s) 175, 198
XcmI CCANNNNNNNNNTGG 1 cut(s) 175
XmnI GAANNNNTTC 1 cut(s) 240
XspI CTAG 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.