Rroxscaffold_1G00006240

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0015770
Physical Location & Seq
Reverse (-)
8312171 .. 8315095
2925 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00006240.1

Sequence Viewer

Length: 411 bp
ATGGCGTTTTCCGGCGGCGAGTCTAGGGCCGCTGGGTTCGTTTATGAAGTCGTGGAACACCGATTGATGGCTAGTGGAGCTCAATTCATTGAATTGAGTAAAGTGGTGAGCTCGGATACCGAACTGAATAAGAGGAATTGGATGGGCTCGCTCGACGATCACGAGCATAGTAGCTGCAACGTGGTTCCCGACTTCTGTGATGTGTTGATGTTATCGAAGGAGCTTGGTAATTACGGACATGCTCTTACGATGCTTGAGGAAGCAATTAGGCTCGAAACACTAATGTCAAGTTTCGAGGCTCTTTCCGAGGATTTGCAGTGGGAGAGGAGAGGCAACAGTCAATATACTCAAGCAGACATAGATATGATGCGAAATGAATGGGCAAAGTATGTCGTGAAGGCGTATGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

15.45

Weight (kDa)

4.73

Isoelectric Point (pI)

38.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 15, 30
AfiI CCNNNNNNNGG 1 cut(s) 67
AgsI TTSAA 1 cut(s) 92
AluBI AGCT 4 cut(s) 80, 111, 174, 223
AluI AGCT 4 cut(s) 80, 111, 174, 223
Alw21I GWGCWC 2 cut(s) 82, 113
AoxI GGCC 1 cut(s) 27
ApeKI GCWGC 1 cut(s) 174
AspS9I GGNCC 1 cut(s) 27
AsuHPI GGTGA 1 cut(s) 118
BanII GRGCYC 3 cut(s) 82, 113, 149
BauI CACGAG 1 cut(s) 161
Bbv12I GWGCWC 2 cut(s) 82, 113
BbvI GCAGC 1 cut(s) 161
BccI CCATC 2 cut(s) 61, 136
BciVI GTATCC 1 cut(s) 109
BfaI CTAG 2 cut(s) 24, 72
BfuI GTATCC 1 cut(s) 109
BisI GCNGC 3 cut(s) 16, 30, 175
BlsI GCNGC 3 cut(s) 17, 31, 176
BmgT120I GGNCC 1 cut(s) 27
BmiI GGNNCC 1 cut(s) 186
BmsI GCATC 2 cut(s) 240, 357
BpuEI CTTGAG 2 cut(s) 275, 333
BsaJI CCNNGG 1 cut(s) 306
Bsc4I CCNNNNNNNGG 1 cut(s) 67
BseDI CCNNGG 1 cut(s) 306
BseGI GGATG 1 cut(s) 147
BseLI CCNNNNNNNGG 1 cut(s) 67
BseRI GAGGAG 1 cut(s) 340
BseXI GCAGC 1 cut(s) 161
BseYI CCCAGC 1 cut(s) 32
BshFI GGCC 1 cut(s) 29
BsiHKAI GWGCWC 2 cut(s) 82, 113
BsiSI CCGG 1 cut(s) 12
BslI CCNNNNNNNGG 1 cut(s) 67
BsnI GGCC 1 cut(s) 29
Bsp1286I GDGCHC 3 cut(s) 82, 113, 149
Bsp143I GATC 1 cut(s) 157
BspACI CCGC 2 cut(s) 15, 30
BspANI GGCC 1 cut(s) 29
BspLI GGNNCC 1 cut(s) 186
BssECI CCNNGG 1 cut(s) 306
BssMI GATC 1 cut(s) 157
BssSI CACGAG 1 cut(s) 161
Bst2BI CACGAG 1 cut(s) 161
Bst4CI ACNGT 1 cut(s) 338
BstC8I GCNNGC 1 cut(s) 149
BstF5I GGATG 1 cut(s) 147
BstKTI GATC 1 cut(s) 160
BstMBI GATC 1 cut(s) 157
BstMWI GCNNNNNNNGC 1 cut(s) 77
BstNSI RCATGY 1 cut(s) 242
BstV1I GCAGC 1 cut(s) 161
BsuI GTATCC 1 cut(s) 109
BsuRI GGCC 1 cut(s) 29
BtsCI GGATG 1 cut(s) 147
BtsI GCAGTG 1 cut(s) 323
BtsIMutI CAGTG 1 cut(s) 323
Cac8I GCNNGC 1 cut(s) 149
Cfr13I GGNCC 1 cut(s) 27
CviAII CATG 1 cut(s) 239
CviJI RGCY 9 cut(s) 29, 71, 80, 111, 147, 174, 223, 271, 299
CviKI_1 RGCY 9 cut(s) 29, 71, 80, 111, 147, 174, 223, 271, 299
DpnI GATC 1 cut(s) 159
DpnII GATC 1 cut(s) 157
Ecl136II GAGCTC 2 cut(s) 80, 111
Eco24I GRGCYC 3 cut(s) 82, 113, 149
Eco53kI GAGCTC 2 cut(s) 80, 111
EcoICRI GAGCTC 2 cut(s) 80, 111
EcoT38I GRGCYC 3 cut(s) 82, 113, 149
FaeI CATG 1 cut(s) 242
FaiI YATR 8 cut(s) 45, 168, 240, 345, 359, 365, 390, 405
FatI CATG 1 cut(s) 238
Fnu4HI GCNGC 3 cut(s) 16, 30, 175
FokI GGATG 1 cut(s) 154
FriOI GRGCYC 3 cut(s) 82, 113, 149
Fsp4HI GCNGC 3 cut(s) 16, 30, 175
FspBI CTAG 2 cut(s) 24, 72
GluI GCNGC 3 cut(s) 16, 30, 175
GsaI CCCAGC 1 cut(s) 36
HaeIII GGCC 1 cut(s) 29
HapII CCGG 1 cut(s) 12
Hin1II CATG 1 cut(s) 242
HinfI GANTC 1 cut(s) 20
HpaII CCGG 1 cut(s) 12
HphI GGTGA 1 cut(s) 118
Hpy188I TCNGA 2 cut(s) 115, 307
Hpy188III TCNNGA 3 cut(s) 161, 188, 394
Hpy99I CGWCG 1 cut(s) 158
HpyAV CCTTC 2 cut(s) 211, 391
HpyCH4III ACNGT 1 cut(s) 338
HpyCH4IV ACGT 1 cut(s) 180
HpyCH4V TGCA 2 cut(s) 177, 316
HpyF10VI GCNNNNNNNGC 1 cut(s) 77
HpySE526I ACGT 1 cut(s) 180
Hsp92II CATG 1 cut(s) 242
Kzo9I GATC 1 cut(s) 157
LmnI GCTCC 2 cut(s) 77, 220
LpnPI CCDG 2 cut(s) 18, 25
Lsp1109I GCAGC 1 cut(s) 161
LweI GCATC 2 cut(s) 240, 357
MaeI CTAG 2 cut(s) 24, 72
MaeII ACGT 1 cut(s) 180
MalI GATC 1 cut(s) 159
MboI GATC 1 cut(s) 157
MhlI GDGCHC 3 cut(s) 82, 113, 149
MluCI AATT 5 cut(s) 83, 92, 136, 229, 264
MlyI GAGTC 1 cut(s) 29
MnlI CCTC 6 cut(s) 126, 250, 289, 301, 318, 323
MslI CAYNNNNRTG 1 cut(s) 362
MspA1I CMGCKG 1 cut(s) 32
MspI CCGG 1 cut(s) 12
MwoI GCNNNNNNNGC 1 cut(s) 77
NdeII GATC 1 cut(s) 157
NlaIII CATG 1 cut(s) 242
NlaIV GGNNCC 1 cut(s) 186
NspI RCATGY 1 cut(s) 242
PcsI WCGNNNNNNNCGW 2 cut(s) 159, 186
PkrI GCNGC 3 cut(s) 17, 31, 176
PleI GAGTC 1 cut(s) 28
PpsI GAGTC 1 cut(s) 28
Psp124BI GAGCTC 2 cut(s) 82, 113
PspFI CCCAGC 1 cut(s) 32
PspN4I GGNNCC 1 cut(s) 186
PspPI GGNCC 1 cut(s) 27
RseI CAYNNNNRTG 1 cut(s) 362
SacI GAGCTC 2 cut(s) 82, 113
SatI GCNGC 3 cut(s) 16, 30, 175
Sau3AI GATC 1 cut(s) 157
Sau96I GGNCC 1 cut(s) 27
SchI GAGTC 1 cut(s) 29
SduI GDGCHC 3 cut(s) 82, 113, 149
SetI ASST 5 cut(s) 82, 113, 176, 183, 225
SfaNI GCATC 2 cut(s) 240, 357
SmiMI CAYNNNNRTG 1 cut(s) 362
SmlI CTYRAG 2 cut(s) 254, 348
SmoI CTYRAG 2 cut(s) 254, 348
Sse9I AATT 5 cut(s) 83, 92, 136, 229, 264
SsiI CCGC 2 cut(s) 15, 30
SspMI CTAG 2 cut(s) 24, 72
SstI GAGCTC 2 cut(s) 82, 113
TaaI ACNGT 1 cut(s) 338
TaiI ACGT 1 cut(s) 183
TaqI TCGA 4 cut(s) 153, 215, 273, 294
TasI AATT 5 cut(s) 83, 92, 136, 229, 264
TauI GCSGC 2 cut(s) 18, 32
TscAI CASTG 1 cut(s) 323
TseI GCWGC 1 cut(s) 174
TspDTI ATGAA 3 cut(s) 60, 76, 390
TspGWI ACGGA 1 cut(s) 249
TspRI CASTG 1 cut(s) 323
XceI RCATGY 1 cut(s) 242
XspI CTAG 2 cut(s) 24, 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.