Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000189.1

Orthogroup ID

OG0015770

Physical Location & Seq

Genomic Coordinates Forward (+)

96121 .. 98624

Gene Structure 2504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000189.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

atgtgtctgactgagactttggatgagatggttcagaacgggactctcagtcctgagcttgccattcaggttctggttcagttcgaaaaaggagacccggccataactcctccgtccagccatctctcggcggcgcaccaccggcgttcgactcctcttctcagtgccaacatgcctatggctgctgggttcatttttgaagtcgtggaacaccgattgatggctagtggagctcaattcattgaattgagtaaagtggtgagctcggataccgaactgaataagaggaattggatgggctctgctcgacgatcacagagcatagtagctgcaagttatgcttgttcaagatctctgtgggtctatgaaggagtcattgatgatcgttatggtgaatgtttcattgctgagaacaaatctcttcaaaagatgttgtttaagggttttcccgatgcttgtgattcattgatggttctgaggaatggtgcactggacataaagatagagcctttagtaagcacatttagttgcttcaaattggagacacttctccttgcactcttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003712 GO:0003713 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005672 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0016591 GO:0017025 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022607 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051090 GO:0051091 GO:0051123 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0055029 GO:0060255 GO:0061695 GO:0065003 GO:0065004 GO:0065007 GO:0065009 GO:0070013 GO:0070897 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 ko05203 map03022 map05203

Pfam Domains

Protein Families

TFIIA_gamma_C TFIIA_gamma_N

Protein Analysis

188

Amino Acids

20.81

Weight (kDa)

5.57

Isoelectric Point (pI)

59.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015770)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000009962
rosa_multiflora	Rmu_sc0000907.1_g000019 Rmu_sc0002176.1_g000021 Rmu_sc0002784.1_g000051 Rmu_ssc0000189.1_g000012
rosa_roxburghii	Rroxscaffold_1G00006240 Rroxscaffold_1G00027140 Rroxscaffold_1G00034790 Rroxscaffold_2G00096640 Rroxscaffold_2G00099810
rosa_rugosa	Rorug07G0130300 Rorug07G0130400
rosa_samantha	Rh4BG038300 Rh5CG419300 Rh6DG247100 Rh7BG237100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	131
AcoI	YGGCCR	1 cut(s)	99
AfiI	CCNNNNNNNGG	2 cut(s)	127, 220
AgsI	TTSAA	5 cut(s)	200, 245, 348, 425, 535
AhdI	GACNNNNNGTC	1 cut(s)	48
AluBI	AGCT	4 cut(s)	58, 233, 264, 329
AluI	AGCT	4 cut(s)	58, 233, 264, 329
Alw21I	GWGCWC	3 cut(s)	235, 266, 490
Alw26I	GTCTC	3 cut(s)	8, 87, 536
Alw44I	GTGCAC	1 cut(s)	486
AlwNI	CAGNNNCTG	1 cut(s)	73
AoxI	GGCC	1 cut(s)	99
ApaLI	GTGCAC	1 cut(s)	486
ApeKI	GCWGC	2 cut(s)	182, 329
ArsI	GACNNNNNNTTYG	1 cut(s)	33
AspLEI	GCGC	1 cut(s)	136
AsuC2I	CCSGG	1 cut(s)	98
AsuHPI	GGTGA	2 cut(s)	271, 404
AsuII	TTCGAA	1 cut(s)	84
BaeGI	GKGCMC	1 cut(s)	490
BanII	GRGCYC	3 cut(s)	235, 266, 302
Bbv12I	GWGCWC	3 cut(s)	235, 266, 490
BbvI	GCAGC	2 cut(s)	169, 316
BccI	CCATC	5 cut(s)	22, 129, 214, 289, 463
BciVI	GTATCC	1 cut(s)	262
BcnI	CCSGG	1 cut(s)	98
BcoDI	GTCTC	3 cut(s)	8, 87, 536
BfaI	CTAG	1 cut(s)	225
BfuI	GTATCC	1 cut(s)	262
BglII	AGATCT	1 cut(s)	350
BisI	GCNGC	3 cut(s)	132, 183, 330
BlsI	GCNGC	3 cut(s)	133, 184, 331
Bme1390I	CCNGG	1 cut(s)	98
BmeRI	GACNNNNNGTC	1 cut(s)	48
BmrFI	CCNGG	1 cut(s)	98
BmsI	GCATC	1 cut(s)	442
Bpu10I	CCTNAGC	1 cut(s)	54
Bpu14I	TTCGAA	1 cut(s)	84
BpuMI	CCSGG	1 cut(s)	98
BsaI	GGTCTC	1 cut(s)	87
Bsc4I	CCNNNNNNNGG	2 cut(s)	127, 220
Bse118I	RCCGGY	1 cut(s)	141
Bse1I	ACTGG	1 cut(s)	495
Bse3DI	GCAATG	1 cut(s)	402
BseGI	GGATG	2 cut(s)	28, 300
BseLI	CCNNNNNNNGG	2 cut(s)	127, 220
BseMI	GCAATG	1 cut(s)	402
BseMII	CTCAG	5 cut(s)	45, 61, 175, 399, 467
BseNI	ACTGG	1 cut(s)	495
BseRI	GAGGAG	2 cut(s)	99, 144
BseSI	GKGCMC	1 cut(s)	490
BseXI	GCAGC	2 cut(s)	169, 316
BseYI	CCCAGC	1 cut(s)	185
BshFI	GGCC	1 cut(s)	101
BsiHKAI	GWGCWC	3 cut(s)	235, 266, 490
BsiSI	CCGG	2 cut(s)	98, 142
BslFI	GGGAC	1 cut(s)	55
BslI	CCNNNNNNNGG	2 cut(s)	127, 220
BsmAI	GTCTC	3 cut(s)	8, 87, 536
BsmFI	GGGAC	1 cut(s)	55
BsnI	GGCC	1 cut(s)	101
Bso31I	GGTCTC	1 cut(s)	87
Bsp119I	TTCGAA	1 cut(s)	84
Bsp1286I	GDGCHC	4 cut(s)	235, 266, 302, 490
Bsp143I	GATC	3 cut(s)	311, 350, 382
BspACI	CCGC	1 cut(s)	131
BspANI	GGCC	1 cut(s)	101
BspCNI	CTCAG	6 cut(s)	4, 46, 60, 174, 400, 468
BspT104I	TTCGAA	1 cut(s)	84
BspTNI	GGTCTC	1 cut(s)	87
BsrDI	GCAATG	1 cut(s)	402
BsrFI	RCCGGY	1 cut(s)	141
BsrI	ACTGG	1 cut(s)	495
BssAI	RCCGGY	1 cut(s)	141
BssMI	GATC	3 cut(s)	311, 350, 382
Bst6I	CTCTTC	2 cut(s)	162, 426
BstAPI	GCANNNNNTGC	1 cut(s)	338
BstBI	TTCGAA	1 cut(s)	84
BstC8I	GCNNGC	1 cut(s)	60
BstDEI	CTNAG	6 cut(s)	12, 47, 54, 161, 408, 476
BstF5I	GGATG	2 cut(s)	28, 300
BstHHI	GCGC	1 cut(s)	136
BstKTI	GATC	3 cut(s)	314, 353, 385
BstMAI	GTCTC	3 cut(s)	8, 87, 536
BstMBI	GATC	3 cut(s)	311, 350, 382
BstMWI	GCNNNNNNNGC	3 cut(s)	142, 230, 338
BstNSI	RCATGY	1 cut(s)	175
BstSCI	CCNGG	1 cut(s)	96
BstSLI	GKGCMC	1 cut(s)	490
BstV1I	GCAGC	2 cut(s)	169, 316
BstX2I	RGATCY	1 cut(s)	350
BstYI	RGATCY	1 cut(s)	350
BsuI	GTATCC	1 cut(s)	262
BsuRI	GGCC	1 cut(s)	101
BtsCI	GGATG	2 cut(s)	28, 300
BtsIMutI	CAGTG	2 cut(s)	169, 488
Cac8I	GCNNGC	1 cut(s)	60
CaiI	CAGNNNCTG	1 cut(s)	73
CfoI	GCGC	1 cut(s)	136
Cfr10I	RCCGGY	1 cut(s)	141
CviAII	CATG	1 cut(s)	172
DdeI	CTNAG	6 cut(s)	12, 47, 54, 161, 408, 476
DpnI	GATC	3 cut(s)	313, 352, 384
DpnII	GATC	3 cut(s)	311, 350, 382
DriI	GACNNNNNGTC	1 cut(s)	48
EaeI	YGGCCR	1 cut(s)	99
Eam1104I	CTCTTC	2 cut(s)	162, 426
Eam1105I	GACNNNNNGTC	1 cut(s)	48
EarI	CTCTTC	2 cut(s)	162, 426
Ecl136II	GAGCTC	2 cut(s)	233, 264
Eco24I	GRGCYC	3 cut(s)	235, 266, 302
Eco31I	GGTCTC	1 cut(s)	87
Eco53kI	GAGCTC	2 cut(s)	233, 264
EcoICRI	GAGCTC	2 cut(s)	233, 264
EcoT38I	GRGCYC	3 cut(s)	235, 266, 302
FaeI	CATG	1 cut(s)	175
FaiI	YATR	8 cut(s)	104, 173, 179, 323, 339, 366, 390, 497
FalI	AAGNNNNNCTT	2 cut(s)	325, 357
FaqI	GGGAC	1 cut(s)	55
FatI	CATG	1 cut(s)	171
Fnu4HI	GCNGC	3 cut(s)	132, 183, 330
FokI	GGATG	2 cut(s)	35, 307
FriOI	GRGCYC	3 cut(s)	235, 266, 302
Fsp4HI	GCNGC	3 cut(s)	132, 183, 330
FspBI	CTAG	1 cut(s)	225
GlaI	GCGC	1 cut(s)	135
GluI	GCNGC	3 cut(s)	132, 183, 330
GsaI	CCCAGC	1 cut(s)	189
HaeIII	GGCC	1 cut(s)	101
HapII	CCGG	2 cut(s)	98, 142
HhaI	GCGC	1 cut(s)	136
Hin1II	CATG	1 cut(s)	175
Hin6I	GCGC	1 cut(s)	134
HinP1I	GCGC	1 cut(s)	134
HinfI	GANTC	4 cut(s)	43, 151, 372, 461
HpaII	CCGG	2 cut(s)	98, 142
HphI	GGTGA	2 cut(s)	271, 404
Hpy166II	GTNNAC	1 cut(s)	488
Hpy188I	TCNGA	4 cut(s)	9, 36, 268, 477
Hpy188III	TCNNGA	3 cut(s)	53, 348, 449
Hpy8I	GTNNAC	1 cut(s)	488
Hpy99I	CGWCG	1 cut(s)	312
HpyAV	CCTTC	1 cut(s)	362
HpyCH4V	TGCA	3 cut(s)	332, 488, 557
HpyF10VI	GCNNNNNNNGC	3 cut(s)	142, 230, 338
HpyF3I	CTNAG	6 cut(s)	12, 47, 54, 161, 408, 476
Hsp92II	CATG	1 cut(s)	175
HspAI	GCGC	1 cut(s)	134
Kzo9I	GATC	3 cut(s)	311, 350, 382
LmnI	GCTCC	1 cut(s)	230
LpnPI	CCDG	8 cut(s)	53, 59, 66, 111, 130, 155, 171, 476
Lsp1109I	GCAGC	2 cut(s)	169, 316
LweI	GCATC	1 cut(s)	442
MaeI	CTAG	1 cut(s)	225
MalI	GATC	3 cut(s)	313, 352, 384
MboI	GATC	3 cut(s)	311, 350, 382
MboII	GAAGA	2 cut(s)	149, 413
MflI	RGATCY	1 cut(s)	350
MhlI	GDGCHC	4 cut(s)	235, 266, 302, 490
MluCI	AATT	4 cut(s)	236, 245, 289, 536
MlyI	GAGTC	3 cut(s)	37, 145, 381
MnlI	CCTC	4 cut(s)	120, 165, 279, 471
MseI	TTAA	2 cut(s)	438, 565
MslI	CAYNNNNRTG	1 cut(s)	176
MspI	CCGG	2 cut(s)	98, 142
MspR9I	CCNGG	1 cut(s)	98
MwoI	GCNNNNNNNGC	3 cut(s)	142, 230, 338
NciI	CCSGG	1 cut(s)	98
NdeII	GATC	3 cut(s)	311, 350, 382
NlaIII	CATG	1 cut(s)	175
NmeAIII	GCCGAG	1 cut(s)	107
NspI	RCATGY	1 cut(s)	175
NspV	TTCGAA	1 cut(s)	84
PfeI	GAWTC	1 cut(s)	461
PkrI	GCNGC	3 cut(s)	133, 184, 331
PleI	GAGTC	3 cut(s)	37, 145, 380
PpsI	GAGTC	3 cut(s)	37, 145, 380
Psp124BI	GAGCTC	2 cut(s)	235, 266
PspFI	CCCAGC	1 cut(s)	185
PstNI	CAGNNNCTG	1 cut(s)	73
PsuI	RGATCY	1 cut(s)	350
RseI	CAYNNNNRTG	1 cut(s)	176
SacI	GAGCTC	2 cut(s)	235, 266
SaqAI	TTAA	2 cut(s)	438, 565
SatI	GCNGC	3 cut(s)	132, 183, 330
Sau3AI	GATC	3 cut(s)	311, 350, 382
SchI	GAGTC	3 cut(s)	37, 145, 381
ScrFI	CCNGG	1 cut(s)	98
SduI	GDGCHC	4 cut(s)	235, 266, 302, 490
SetI	ASST	5 cut(s)	60, 72, 235, 266, 331
SfaNI	GCATC	1 cut(s)	442
SfuI	TTCGAA	1 cut(s)	84
SgrAI	CRCCGGYG	1 cut(s)	141
SmiMI	CAYNNNNRTG	1 cut(s)	176
Sse9I	AATT	4 cut(s)	236, 245, 289, 536
SsiI	CCGC	1 cut(s)	131
SspMI	CTAG	1 cut(s)	225
SstI	GAGCTC	2 cut(s)	235, 266
StyD4I	CCNGG	1 cut(s)	96
TaqI	TCGA	3 cut(s)	84, 149, 307
TasI	AATT	4 cut(s)	236, 245, 289, 536
TauI	GCSGC	1 cut(s)	134
TfiI	GAWTC	1 cut(s)	461
Tru1I	TTAA	2 cut(s)	438, 565
Tru9I	TTAA	2 cut(s)	438, 565
TscAI	CASTG	2 cut(s)	169, 495
TseI	GCWGC	2 cut(s)	182, 329
TspDTI	ATGAA	5 cut(s)	181, 229, 381, 391, 453
TspGWI	ACGGA	1 cut(s)	102
TspRI	CASTG	2 cut(s)	169, 495
VneI	GTGCAC	1 cut(s)	486
XceI	RCATGY	1 cut(s)	175
XcmI	CCANNNNNNNNNTGG	2 cut(s)	70, 175
XspI	CTAG	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.