Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002784.1

Orthogroup ID

OG0015770

Physical Location & Seq

Genomic Coordinates Forward (+)

217227 .. 218940

Gene Structure 1714 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002784.1_g000051.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

atgtgtctgattgagactttggatgagatggttcagaacgggactctaagtcctgagcttgccattcaagttctggttcagttcgaaaaaggagacccggccataactcctccgtccagccatctctcggcggcgcaccactggcgttcgactcctcttctcagtgccaacatgcctatggtggtggaccatacatgcacacatagtggggagagattcaaaacccaaaagcctgaagcttttccggcgactctggctgctgggttcgtttctgaagtcgtggaacaccgattgatggctagtggagctcaattcattgaattgagtaaagtggtgagctcggataccgaactgaataagaggaattggatgggctctgctcgacgatcacagagcatagtagctgcaagttatgcttgttcaagatctctgtgggtctatgaaggagtcattgatgatcgttatggtgaatgtttcattgctgagaacaaatctcttcaaaaggtattgtctgctctaaatgtgaaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003712 GO:0003713 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005672 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0016591 GO:0017025 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022607 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051090 GO:0051091 GO:0051123 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0055029 GO:0060255 GO:0061695 GO:0065003 GO:0065004 GO:0065007 GO:0065009 GO:0070013 GO:0070897 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 ko05203 map03022 map05203

Pfam Domains

Protein Families

TFIIA_gamma_C TFIIA_gamma_N

Protein Analysis

176

Amino Acids

19.38

Weight (kDa)

6.06

Isoelectric Point (pI)

52.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015770)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000009962
rosa_multiflora	Rmu_sc0000907.1_g000019 Rmu_sc0002176.1_g000021 Rmu_sc0002784.1_g000051 Rmu_ssc0000189.1_g000012
rosa_roxburghii	Rroxscaffold_1G00006240 Rroxscaffold_1G00027140 Rroxscaffold_1G00034790 Rroxscaffold_2G00096640 Rroxscaffold_2G00099810
rosa_rugosa	Rorug07G0130300 Rorug07G0130400
rosa_samantha	Rh4BG038300 Rh5CG419300 Rh6DG247100 Rh7BG237100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	131
AcoI	YGGCCR	1 cut(s)	99
AcuI	CTGAAG	2 cut(s)	255, 294
AdeI	CACNNNGTG	1 cut(s)	206
AfiI	CCNNNNNNNGG	2 cut(s)	127, 295
AgsI	TTSAA	5 cut(s)	68, 220, 320, 423, 500
AhdI	GACNNNNNGTC	1 cut(s)	48
AluBI	AGCT	5 cut(s)	58, 239, 308, 339, 404
AluI	AGCT	5 cut(s)	58, 239, 308, 339, 404
Alw21I	GWGCWC	2 cut(s)	310, 341
Alw26I	GTCTC	2 cut(s)	8, 87
AoxI	GGCC	1 cut(s)	99
ApeKI	GCWGC	2 cut(s)	257, 404
Asp700I	GAANNNNTTC	1 cut(s)	240
AspLEI	GCGC	1 cut(s)	136
AspS9I	GGNCC	1 cut(s)	187
AsuC2I	CCSGG	1 cut(s)	98
AsuHPI	GGTGA	2 cut(s)	346, 479
AsuII	TTCGAA	1 cut(s)	84
AvaII	GGWCC	1 cut(s)	187
BanII	GRGCYC	3 cut(s)	310, 341, 377
Bbv12I	GWGCWC	2 cut(s)	310, 341
BbvI	GCAGC	2 cut(s)	244, 391
BccI	CCATC	4 cut(s)	22, 129, 289, 364
BciVI	GTATCC	1 cut(s)	337
BcnI	CCSGG	1 cut(s)	98
BcoDI	GTCTC	2 cut(s)	8, 87
BfaI	CTAG	1 cut(s)	300
BfuI	GTATCC	1 cut(s)	337
BglII	AGATCT	1 cut(s)	425
BisI	GCNGC	3 cut(s)	132, 258, 405
BlsI	GCNGC	3 cut(s)	133, 259, 406
Bme1390I	CCNGG	1 cut(s)	98
Bme18I	GGWCC	1 cut(s)	187
BmeRI	GACNNNNNGTC	1 cut(s)	48
BmgT120I	GGNCC	1 cut(s)	187
BmrFI	CCNGG	1 cut(s)	98
Bpu10I	CCTNAGC	1 cut(s)	54
Bpu14I	TTCGAA	1 cut(s)	84
BpuMI	CCSGG	1 cut(s)	98
BsaI	GGTCTC	1 cut(s)	87
Bsc4I	CCNNNNNNNGG	2 cut(s)	127, 295
Bse1I	ACTGG	1 cut(s)	146
Bse3DI	GCAATG	1 cut(s)	477
BseGI	GGATG	2 cut(s)	28, 375
BseLI	CCNNNNNNNGG	2 cut(s)	127, 295
BseMI	GCAATG	1 cut(s)	477
BseMII	CTCAG	3 cut(s)	45, 175, 474
BseNI	ACTGG	1 cut(s)	146
BseRI	GAGGAG	2 cut(s)	99, 144
BseXI	GCAGC	2 cut(s)	244, 391
BseYI	CCCAGC	1 cut(s)	260
BshFI	GGCC	1 cut(s)	101
BsiHKAI	GWGCWC	2 cut(s)	310, 341
BsiSI	CCGG	2 cut(s)	98, 245
BslFI	GGGAC	1 cut(s)	55
BslI	CCNNNNNNNGG	2 cut(s)	127, 295
BsmAI	GTCTC	2 cut(s)	8, 87
BsmFI	GGGAC	1 cut(s)	55
BsnI	GGCC	1 cut(s)	101
Bso31I	GGTCTC	1 cut(s)	87
Bsp119I	TTCGAA	1 cut(s)	84
Bsp1286I	GDGCHC	3 cut(s)	310, 341, 377
Bsp143I	GATC	3 cut(s)	386, 425, 457
BspACI	CCGC	1 cut(s)	131
BspANI	GGCC	1 cut(s)	101
BspCNI	CTCAG	3 cut(s)	46, 174, 475
BspT104I	TTCGAA	1 cut(s)	84
BspTNI	GGTCTC	1 cut(s)	87
BsrDI	GCAATG	1 cut(s)	477
BsrI	ACTGG	1 cut(s)	146
BssMI	GATC	3 cut(s)	386, 425, 457
Bst6I	CTCTTC	2 cut(s)	162, 501
BstAPI	GCANNNNNTGC	1 cut(s)	413
BstBI	TTCGAA	1 cut(s)	84
BstC8I	GCNNGC	1 cut(s)	60
BstDEI	CTNAG	4 cut(s)	47, 54, 161, 483
BstF5I	GGATG	2 cut(s)	28, 375
BstHHI	GCGC	1 cut(s)	136
BstKTI	GATC	3 cut(s)	389, 428, 460
BstMAI	GTCTC	2 cut(s)	8, 87
BstMBI	GATC	3 cut(s)	386, 425, 457
BstMWI	GCNNNNNNNGC	5 cut(s)	142, 245, 254, 305, 413
BstNSI	RCATGY	2 cut(s)	175, 198
BstSCI	CCNGG	1 cut(s)	96
BstV1I	GCAGC	2 cut(s)	244, 391
BstX2I	RGATCY	1 cut(s)	425
BstYI	RGATCY	1 cut(s)	425
BsuI	GTATCC	1 cut(s)	337
BsuRI	GGCC	1 cut(s)	101
BtsCI	GGATG	2 cut(s)	28, 375
BtsIMutI	CAGTG	2 cut(s)	139, 169
Cac8I	GCNNGC	1 cut(s)	60
CfoI	GCGC	1 cut(s)	136
Cfr13I	GGNCC	1 cut(s)	187
CviAII	CATG	2 cut(s)	172, 195
DdeI	CTNAG	4 cut(s)	47, 54, 161, 483
DpnI	GATC	3 cut(s)	388, 427, 459
DpnII	GATC	3 cut(s)	386, 425, 457
DraIII	CACNNNGTG	1 cut(s)	206
DriI	GACNNNNNGTC	1 cut(s)	48
EaeI	YGGCCR	1 cut(s)	99
Eam1104I	CTCTTC	2 cut(s)	162, 501
Eam1105I	GACNNNNNGTC	1 cut(s)	48
EarI	CTCTTC	2 cut(s)	162, 501
Ecl136II	GAGCTC	2 cut(s)	308, 339
Eco24I	GRGCYC	3 cut(s)	310, 341, 377
Eco31I	GGTCTC	1 cut(s)	87
Eco47I	GGWCC	1 cut(s)	187
Eco53kI	GAGCTC	2 cut(s)	308, 339
Eco57I	CTGAAG	2 cut(s)	255, 294
EcoICRI	GAGCTC	2 cut(s)	308, 339
EcoT38I	GRGCYC	3 cut(s)	310, 341, 377
FaeI	CATG	2 cut(s)	175, 198
FalI	AAGNNNNNCTT	2 cut(s)	400, 432
FaqI	GGGAC	1 cut(s)	55
FatI	CATG	2 cut(s)	171, 194
Fnu4HI	GCNGC	3 cut(s)	132, 258, 405
FokI	GGATG	2 cut(s)	35, 382
FriOI	GRGCYC	3 cut(s)	310, 341, 377
Fsp4HI	GCNGC	3 cut(s)	132, 258, 405
FspBI	CTAG	1 cut(s)	300
GlaI	GCGC	1 cut(s)	135
GluI	GCNGC	3 cut(s)	132, 258, 405
GsaI	CCCAGC	1 cut(s)	264
HaeIII	GGCC	1 cut(s)	101
HapII	CCGG	2 cut(s)	98, 245
HhaI	GCGC	1 cut(s)	136
Hin1II	CATG	2 cut(s)	175, 198
Hin6I	GCGC	1 cut(s)	134
HinP1I	GCGC	1 cut(s)	134
HindIII	AAGCTT	1 cut(s)	237
HinfI	GANTC	5 cut(s)	43, 151, 216, 250, 447
HpaII	CCGG	2 cut(s)	98, 245
HphI	GGTGA	2 cut(s)	346, 479
Hpy166II	GTNNAC	1 cut(s)	187
Hpy188I	TCNGA	4 cut(s)	9, 36, 274, 343
Hpy188III	TCNNGA	2 cut(s)	53, 423
Hpy8I	GTNNAC	1 cut(s)	187
Hpy99I	CGWCG	1 cut(s)	387
HpyAV	CCTTC	1 cut(s)	437
HpyCH4V	TGCA	2 cut(s)	198, 407
HpyF10VI	GCNNNNNNNGC	5 cut(s)	142, 245, 254, 305, 413
HpyF3I	CTNAG	4 cut(s)	47, 54, 161, 483
Hsp92II	CATG	2 cut(s)	175, 198
HspAI	GCGC	1 cut(s)	134
Kzo9I	GATC	3 cut(s)	386, 425, 457
LmnI	GCTCC	1 cut(s)	305
LpnPI	CCDG	9 cut(s)	59, 66, 111, 127, 130, 239, 246, 246, 258
Lsp1109I	GCAGC	2 cut(s)	244, 391
MaeI	CTAG	1 cut(s)	300
MalI	GATC	3 cut(s)	388, 427, 459
MboI	GATC	3 cut(s)	386, 425, 457
MboII	GAAGA	2 cut(s)	149, 488
MflI	RGATCY	1 cut(s)	425
MhlI	GDGCHC	3 cut(s)	310, 341, 377
MluCI	AATT	3 cut(s)	311, 320, 364
MlyI	GAGTC	4 cut(s)	37, 145, 244, 456
MnlI	CCTC	3 cut(s)	120, 165, 354
MroXI	GAANNNNTTC	1 cut(s)	240
MslI	CAYNNNNRTG	1 cut(s)	176
MspI	CCGG	2 cut(s)	98, 245
MspR9I	CCNGG	1 cut(s)	98
MwoI	GCNNNNNNNGC	5 cut(s)	142, 245, 254, 305, 413
NciI	CCSGG	1 cut(s)	98
NdeII	GATC	3 cut(s)	386, 425, 457
NlaIII	CATG	2 cut(s)	175, 198
NmeAIII	GCCGAG	1 cut(s)	107
NspI	RCATGY	2 cut(s)	175, 198
NspV	TTCGAA	1 cut(s)	84
PdmI	GAANNNNTTC	1 cut(s)	240
PfeI	GAWTC	1 cut(s)	216
PkrI	GCNGC	3 cut(s)	133, 259, 406
PleI	GAGTC	4 cut(s)	37, 145, 244, 455
PpsI	GAGTC	4 cut(s)	37, 145, 244, 455
Psp124BI	GAGCTC	2 cut(s)	310, 341
PspFI	CCCAGC	1 cut(s)	260
PspPI	GGNCC	1 cut(s)	187
PsuI	RGATCY	1 cut(s)	425
RseI	CAYNNNNRTG	1 cut(s)	176
SacI	GAGCTC	2 cut(s)	310, 341
SatI	GCNGC	3 cut(s)	132, 258, 405
Sau3AI	GATC	3 cut(s)	386, 425, 457
Sau96I	GGNCC	1 cut(s)	187
SchI	GAGTC	4 cut(s)	37, 145, 244, 456
ScrFI	CCNGG	1 cut(s)	98
SduI	GDGCHC	3 cut(s)	310, 341, 377
SetI	ASST	6 cut(s)	60, 241, 310, 341, 406, 507
SfuI	TTCGAA	1 cut(s)	84
SinI	GGWCC	1 cut(s)	187
SmiMI	CAYNNNNRTG	1 cut(s)	176
Sse9I	AATT	3 cut(s)	311, 320, 364
SsiI	CCGC	1 cut(s)	131
SspMI	CTAG	1 cut(s)	300
SstI	GAGCTC	2 cut(s)	310, 341
StyD4I	CCNGG	1 cut(s)	96
TaqI	TCGA	3 cut(s)	84, 149, 382
TasI	AATT	3 cut(s)	311, 320, 364
TauI	GCSGC	1 cut(s)	134
TfiI	GAWTC	1 cut(s)	216
TscAI	CASTG	2 cut(s)	146, 169
TseI	GCWGC	2 cut(s)	257, 404
TspDTI	ATGAA	3 cut(s)	304, 456, 466
TspGWI	ACGGA	1 cut(s)	102
TspRI	CASTG	2 cut(s)	146, 169
VpaK11BI	GGWCC	1 cut(s)	187
XceI	RCATGY	2 cut(s)	175, 198
XcmI	CCANNNNNNNNNTGG	2 cut(s)	70, 175
XmnI	GAANNNNTTC	1 cut(s)	240
XspI	CTAG	1 cut(s)	300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.