Rh4BG038300

Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0015770
Physical Location & Seq
Forward (+)
6831218 .. 6832656
1439 bp
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UTR
Exon/CDS
Intron
Rh4BG038300.1

Sequence Viewer

Length: 297 bp
ATGAGTGAGGCTCTGGAAACCCAAGTGAAGAGCAAGGTCTCCATCAAGGAGCTTGGTAATTACAGACATGCTCTTACTGATGCTGAGGAAGCAATTAGGCTCAGAAACACTAATGTCAAGTTCTATTCTCCAATTTCTGCTTGGTTGAACCGTTTGCTACACTTGCAGTTTCAGAGGCTCTTTCCGAGGATTTGCAGGTGGGTCTATGAAGGAGTCATTGATGATCGTTATGGTGAATGTTTCATTGCTGAGAACAAATCTCTTCAAAAGGTATTGTCTGCTCTAAATGTGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000226 GO:0000278 GO:0000280 GO:0000923 GO:0000930 GO:0003674 GO:0005198 GO:0005200 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005815 GO:0005856 GO:0005874 GO:0005881 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0007020 GO:0007049 GO:0007051 GO:0007052 GO:0007275 GO:0008092 GO:0008104 GO:0008150 GO:0008275 GO:0009987 GO:0010638 GO:0010968 GO:0012505 GO:0015630 GO:0015631 GO:0016043 GO:0022402 GO:0022414 GO:0022607 GO:0030863 GO:0030981 GO:0031109 GO:0031110 GO:0031112 GO:0031113 GO:0031116 GO:0031122 GO:0031334 GO:0031503 GO:0031967 GO:0031975 GO:0032153 GO:0032155 GO:0032271 GO:0032273 GO:0032501 GO:0032502 GO:0032886 GO:0032991 GO:0033036 GO:0033043 GO:0033566 GO:0034613 GO:0034622 GO:0034629 GO:0043015 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043254 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044450 GO:0044464 GO:0046785 GO:0048229 GO:0048285 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051179 GO:0051225 GO:0051258 GO:0051321 GO:0051415 GO:0051418 GO:0051493 GO:0051495 GO:0051641 GO:0055028 GO:0065003 GO:0065007 GO:0070507 GO:0070727 GO:0070925 GO:0071840 GO:0071944 GO:0090063 GO:0090307 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0140014 GO:1902850 GO:1902903 GO:1902905 GO:1903047
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Spc97_Spc98

Protein Analysis

98

Amino Acids

11.47

Weight (kDa)

9.26

Isoelectric Point (pI)

38.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GCP_N_terminal PF17681 46 - 91 2.5e-06 Gamma tubulin complex component N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 186
Acc36I ACCTGC 1 cut(s) 186
AgsI TTSAA 2 cut(s) 148, 266
AluBI AGCT 1 cut(s) 52
AluI AGCT 1 cut(s) 52
Alw26I GTCTC 1 cut(s) 43
AsuHPI GGTGA 1 cut(s) 245
BbvCI CCTCAGC 1 cut(s) 84
BccI CCATC 1 cut(s) 50
BcoDI GTCTC 1 cut(s) 43
BfuAI ACCTGC 1 cut(s) 186
BmsI GCATC 1 cut(s) 70
BplI GAGNNNNNCTC 1 cut(s) 27
Bpu10I CCTNAGC 1 cut(s) 84
BsaI GGTCTC 1 cut(s) 43
BsaJI CCNNGG 1 cut(s) 185
Bse3DI GCAATG 1 cut(s) 243
BseDI CCNNGG 1 cut(s) 185
BseMI GCAATG 1 cut(s) 243
BseMII CTCAG 3 cut(s) 75, 115, 240
BsmAI GTCTC 1 cut(s) 43
Bso31I GGTCTC 1 cut(s) 43
Bsp143I GATC 1 cut(s) 223
BspCNI CTCAG 3 cut(s) 76, 114, 241
BspMI ACCTGC 1 cut(s) 186
BspQI GCTCTTC 1 cut(s) 23
BspTNI GGTCTC 1 cut(s) 43
BsrDI GCAATG 1 cut(s) 243
BssECI CCNNGG 1 cut(s) 185
BssMI GATC 1 cut(s) 223
Bst4CI ACNGT 1 cut(s) 152
Bst6I CTCTTC 2 cut(s) 23, 267
BstDEI CTNAG 3 cut(s) 84, 101, 249
BstKTI GATC 1 cut(s) 226
BstMAI GTCTC 1 cut(s) 43
BstMBI GATC 1 cut(s) 223
BstMWI GCNNNNNNNGC 2 cut(s) 89, 163
BstNSI RCATGY 1 cut(s) 71
BveI ACCTGC 1 cut(s) 186
CviAII CATG 1 cut(s) 68
CviJI RGCY 4 cut(s) 11, 52, 100, 178
CviKI_1 RGCY 4 cut(s) 11, 52, 100, 178
DdeI CTNAG 3 cut(s) 84, 101, 249
DpnI GATC 1 cut(s) 225
DpnII GATC 1 cut(s) 223
Eam1104I CTCTTC 2 cut(s) 23, 267
EarI CTCTTC 2 cut(s) 23, 267
Eco31I GGTCTC 1 cut(s) 43
FaeI CATG 1 cut(s) 71
FaiI YATR 3 cut(s) 69, 207, 231
FatI CATG 1 cut(s) 67
Hin1II CATG 1 cut(s) 71
HinfI GANTC 1 cut(s) 213
HphI GGTGA 1 cut(s) 245
Hpy188I TCNGA 3 cut(s) 104, 174, 186
Hpy188III TCNNGA 1 cut(s) 14
HpyAV CCTTC 1 cut(s) 203
HpyCH4III ACNGT 1 cut(s) 152
HpyCH4V TGCA 2 cut(s) 166, 195
HpyF10VI GCNNNNNNNGC 2 cut(s) 89, 163
HpyF3I CTNAG 3 cut(s) 84, 101, 249
Hsp92II CATG 1 cut(s) 71
Kzo9I GATC 1 cut(s) 223
LguI GCTCTTC 1 cut(s) 23
LmnI GCTCC 1 cut(s) 49
LpnPI CCDG 1 cut(s) 181
LweI GCATC 1 cut(s) 70
MalI GATC 1 cut(s) 225
MboI GATC 1 cut(s) 223
MboII GAAGA 2 cut(s) 40, 254
MluCI AATT 3 cut(s) 58, 93, 132
MlyI GAGTC 1 cut(s) 222
MnlI CCTC 3 cut(s) 79, 168, 180
MwoI GCNNNNNNNGC 2 cut(s) 89, 163
NdeII GATC 1 cut(s) 223
NlaIII CATG 1 cut(s) 71
NspI RCATGY 1 cut(s) 71
PaqCI CACCTGC 1 cut(s) 186
PciSI GCTCTTC 1 cut(s) 23
PleI GAGTC 1 cut(s) 221
PpsI GAGTC 1 cut(s) 221
SapI GCTCTTC 1 cut(s) 23
Sau3AI GATC 1 cut(s) 223
SchI GAGTC 1 cut(s) 222
SetI ASST 4 cut(s) 39, 54, 200, 273
SfaNI GCATC 1 cut(s) 70
Sse9I AATT 3 cut(s) 58, 93, 132
TaaI ACNGT 1 cut(s) 152
TasI AATT 3 cut(s) 58, 93, 132
TspDTI ATGAA 2 cut(s) 222, 232
XceI RCATGY 1 cut(s) 71
XcmI CCANNNNNNNNNTGG 1 cut(s) 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.