Rroxscaffold_2G00099810

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0015770
Physical Location & Seq
Reverse (-)
21582523 .. 21583311
789 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00099810.1

Sequence Viewer

Length: 372 bp
ATGGAAGACCCGACTGGAACTTCCGCTTCCGGCGACGACACGACGGCGGACCACCAACGTTTGCTTCGTCTCCTCAACACCGAAACAGTTGTGGTGGTGGATCGTCCATGCATGGGTCGTGGTGAGAGATTCGAAGCTCGAAAGATGTGTCAACCTCGACTAGAGCTGAGTTTTCGAAGCTGCTGGGTTGGTGTACATCTGCTCCTTCGTTTTTCACGGTTGAAATTCTGGGAAGTACCGTGTTTTGAAATTGAGCCTAGAAACGATGAAGTGGATGGTACCAAAGTTCGGAATTACCTCTGCTCGTTGTGCACAGAGCAAGTTGCTAATGGGTACTTTGCTTTTAGTCAAATTGATGAAGTTGGATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

14.14

Weight (kDa)

5.18

Isoelectric Point (pI)

33.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 278
AccB1I GGYRCC 1 cut(s) 278
AciI CCGC 2 cut(s) 24, 47
AclI AACGTT 1 cut(s) 58
AclWI GGATC 1 cut(s) 108
AcsI RAATTY 1 cut(s) 224
AfaI GTAC 4 cut(s) 195, 237, 280, 335
AfiI CCNNNNNNNGG 2 cut(s) 113, 288
AgsI TTSAA 2 cut(s) 223, 248
AjuI GAANNNNNNNTTGG 2 cut(s) 48, 80
AluBI AGCT 3 cut(s) 137, 166, 180
AluI AGCT 3 cut(s) 137, 166, 180
Alw21I GWGCWC 1 cut(s) 314
Alw26I GTCTC 1 cut(s) 74
Alw44I GTGCAC 1 cut(s) 310
AlwI GGATC 1 cut(s) 108
ApaLI GTGCAC 1 cut(s) 310
ApeKI GCWGC 1 cut(s) 180
ApoI RAATTY 1 cut(s) 224
ArsI GACNNNNNNTTYG 2 cut(s) 133, 165
Asp718I GGTACC 1 cut(s) 278
AspS9I GGNCC 1 cut(s) 49
AsuHPI GGTGA 1 cut(s) 134
AsuII TTCGAA 2 cut(s) 132, 175
AvaII GGWCC 1 cut(s) 49
BaeGI GKGCMC 1 cut(s) 314
BaeI ACNNNNGTAYC 2 cut(s) 270, 303
BanI GGYRCC 1 cut(s) 278
BbsI GAAGAC 1 cut(s) 12
Bbv12I GWGCWC 1 cut(s) 314
BbvI GCAGC 1 cut(s) 167
BccI CCATC 1 cut(s) 269
BceAI ACGGC 1 cut(s) 60
BcoDI GTCTC 1 cut(s) 74
BfaI CTAG 2 cut(s) 161, 258
BisI GCNGC 1 cut(s) 181
BlsI GCNGC 1 cut(s) 182
Bme18I GGWCC 1 cut(s) 49
BmgT120I GGNCC 1 cut(s) 49
BmiI GGNNCC 1 cut(s) 280
BpiI GAAGAC 1 cut(s) 12
Bpu14I TTCGAA 2 cut(s) 132, 175
BsaXI ACNNNNNCTCC 2 cut(s) 186, 216
Bsc4I CCNNNNNNNGG 2 cut(s) 113, 288
Bse1I ACTGG 1 cut(s) 19
BseGI GGATG 1 cut(s) 280
BseLI CCNNNNNNNGG 2 cut(s) 113, 288
BseMII CTCAG 1 cut(s) 158
BseNI ACTGG 1 cut(s) 19
BseRI GAGGAG 1 cut(s) 62
BseSI GKGCMC 1 cut(s) 314
BseXI GCAGC 1 cut(s) 167
BseYI CCCAGC 1 cut(s) 183
BshNI GGYRCC 1 cut(s) 278
BsiHKAI GWGCWC 1 cut(s) 314
BsiSI CCGG 1 cut(s) 30
BslI CCNNNNNNNGG 2 cut(s) 113, 288
BsmAI GTCTC 1 cut(s) 74
BsmBI CGTCTC 1 cut(s) 74
Bsp119I TTCGAA 2 cut(s) 132, 175
Bsp1286I GDGCHC 1 cut(s) 314
Bsp1407I TGTACA 1 cut(s) 193
Bsp143I GATC 1 cut(s) 100
BspACI CCGC 2 cut(s) 24, 47
BspCNI CTCAG 1 cut(s) 159
BspLI GGNNCC 1 cut(s) 280
BspPI GGATC 1 cut(s) 108
BspT104I TTCGAA 2 cut(s) 132, 175
BspT107I GGYRCC 1 cut(s) 278
BsrGI TGTACA 1 cut(s) 193
BsrI ACTGG 1 cut(s) 19
BssMI GATC 1 cut(s) 100
Bst4CI ACNGT 3 cut(s) 88, 219, 240
BstAUI TGTACA 1 cut(s) 193
BstBI TTCGAA 2 cut(s) 132, 175
BstDEI CTNAG 1 cut(s) 167
BstF5I GGATG 1 cut(s) 280
BstKTI GATC 1 cut(s) 103
BstMAI GTCTC 1 cut(s) 74
BstMBI GATC 1 cut(s) 100
BstMWI GCNNNNNNNGC 1 cut(s) 309
BstSLI GKGCMC 1 cut(s) 314
BstV1I GCAGC 1 cut(s) 167
BstV2I GAAGAC 1 cut(s) 12
BtsCI GGATG 1 cut(s) 280
Cfr13I GGNCC 1 cut(s) 49
Csp6I GTAC 4 cut(s) 194, 236, 279, 334
CviAII CATG 2 cut(s) 108, 112
CviJI RGCY 4 cut(s) 137, 166, 180, 256
CviKI_1 RGCY 4 cut(s) 137, 166, 180, 256
CviQI GTAC 4 cut(s) 194, 236, 279, 334
DdeI CTNAG 1 cut(s) 167
DpnI GATC 1 cut(s) 102
DpnII GATC 1 cut(s) 100
EciI GGCGGA 1 cut(s) 62
Eco47I GGWCC 1 cut(s) 49
EcoT22I ATGCAT 1 cut(s) 113
Esp3I CGTCTC 1 cut(s) 74
FaeI CATG 2 cut(s) 111, 115
FaiI YATR 2 cut(s) 109, 113
FatI CATG 2 cut(s) 107, 111
Fnu4HI GCNGC 1 cut(s) 181
FokI GGATG 1 cut(s) 287
Fsp4HI GCNGC 1 cut(s) 181
FspBI CTAG 2 cut(s) 161, 258
GluI GCNGC 1 cut(s) 181
GsaI CCCAGC 1 cut(s) 187
HapII CCGG 1 cut(s) 30
Hin1II CATG 2 cut(s) 111, 115
HincII GTYRAC 1 cut(s) 152
HindII GTYRAC 1 cut(s) 152
HinfI GANTC 2 cut(s) 129, 366
HpaII CCGG 1 cut(s) 30
HphI GGTGA 1 cut(s) 134
Hpy166II GTNNAC 3 cut(s) 152, 194, 312
Hpy188I TCNGA 2 cut(s) 291, 371
Hpy8I GTNNAC 3 cut(s) 152, 194, 312
Hpy99I CGWCG 2 cut(s) 38, 46
HpyAV CCTTC 1 cut(s) 215
HpyCH4III ACNGT 3 cut(s) 88, 219, 240
HpyCH4IV ACGT 1 cut(s) 58
HpyCH4V TGCA 2 cut(s) 111, 312
HpyF10VI GCNNNNNNNGC 1 cut(s) 309
HpyF3I CTNAG 1 cut(s) 167
HpySE526I ACGT 1 cut(s) 58
Hsp92II CATG 2 cut(s) 111, 115
KpnI GGTACC 1 cut(s) 282
Kzo9I GATC 1 cut(s) 100
LmnI GCTCC 1 cut(s) 207
LpnPI CCDG 3 cut(s) 43, 169, 214
Lsp1109I GCAGC 1 cut(s) 167
MaeI CTAG 2 cut(s) 161, 258
MaeII ACGT 1 cut(s) 58
MalI GATC 1 cut(s) 102
MboI GATC 1 cut(s) 100
MboII GAAGA 1 cut(s) 17
MhlI GDGCHC 1 cut(s) 314
MluCI AATT 4 cut(s) 224, 249, 292, 351
MmeI TCCRAC 1 cut(s) 343
MnlI CCTC 3 cut(s) 83, 165, 308
Mph1103I ATGCAT 1 cut(s) 113
MspI CCGG 1 cut(s) 30
MwoI GCNNNNNNNGC 1 cut(s) 309
NdeII GATC 1 cut(s) 100
NlaIII CATG 2 cut(s) 111, 115
NlaIV GGNNCC 1 cut(s) 280
NsiI ATGCAT 1 cut(s) 113
NspV TTCGAA 2 cut(s) 132, 175
PcsI WCGNNNNNNNCGW 1 cut(s) 64
PfeI GAWTC 2 cut(s) 129, 366
PkrI GCNGC 1 cut(s) 182
Psp1406I AACGTT 1 cut(s) 58
PspFI CCCAGC 1 cut(s) 183
PspN4I GGNNCC 1 cut(s) 280
PspPI GGNCC 1 cut(s) 49
RsaI GTAC 4 cut(s) 195, 237, 280, 335
RsaNI GTAC 4 cut(s) 194, 236, 279, 334
SatI GCNGC 1 cut(s) 181
Sau3AI GATC 1 cut(s) 100
Sau96I GGNCC 1 cut(s) 49
SduI GDGCHC 1 cut(s) 314
SetI ASST 6 cut(s) 61, 139, 157, 168, 182, 300
SfuI TTCGAA 2 cut(s) 132, 175
SinI GGWCC 1 cut(s) 49
Sse9I AATT 4 cut(s) 224, 249, 292, 351
SsiI CCGC 2 cut(s) 24, 47
SspMI CTAG 2 cut(s) 161, 258
TaaI ACNGT 3 cut(s) 88, 219, 240
TaiI ACGT 1 cut(s) 61
TaqI TCGA 4 cut(s) 132, 139, 157, 175
TasI AATT 4 cut(s) 224, 249, 292, 351
TatI WGTACW 1 cut(s) 193
TfiI GAWTC 2 cut(s) 129, 366
TseI GCWGC 1 cut(s) 180
TspDTI ATGAA 2 cut(s) 282, 372
VneI GTGCAC 1 cut(s) 310
VpaK11BI GGWCC 1 cut(s) 49
XapI RAATTY 1 cut(s) 224
XspI CTAG 2 cut(s) 161, 258
Zsp2I ATGCAT 1 cut(s) 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.