Rroxscaffold_2G00096640

Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
17981011 .. 17983450
2440 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00096640.1

Sequence Viewer

Length: 420 bp
ATGATTGAGGCTGCGGAAACCCAAGTGAAGTGCAAGGTCTCCATCAAGCGTGGTTCTGACTTCTGTGATGTGTTGATGTTATCGAAGGAGCTTGTTCTATTCTCCAATTTCTACTTGGTTGAACCGTTTGCTACACTTGCAGTTTCGAGGCTCTTTCCGAGGATTTGCAGGTGGGTCTATGAAGGAGTCATTGATGATCGTTATGGTGAATGTTTCATTGCTGAGAACAAATCTCTTCAAAAGATGTTGTTTAAGGGTTTTCCCGATGCTTGTGATTCATTGATGGTTACGAGGAATGGTGCACTGGACATAAAGACAGAGCCTTTATGGGAGAGGAGAGGCAACAGTCAATATACTCAAGCAGACATAGATATGATGCGAAATGAATGGGCAAAGTATGTCGTGAAGGCGTATGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000226 GO:0000278 GO:0000280 GO:0000923 GO:0000930 GO:0003674 GO:0005198 GO:0005200 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005654 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0005874 GO:0005881 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0007020 GO:0007049 GO:0007051 GO:0007052 GO:0007098 GO:0007275 GO:0008092 GO:0008104 GO:0008150 GO:0008275 GO:0009987 GO:0010638 GO:0010968 GO:0012505 GO:0015630 GO:0015631 GO:0016043 GO:0022402 GO:0022414 GO:0022607 GO:0030863 GO:0030981 GO:0031023 GO:0031109 GO:0031110 GO:0031112 GO:0031113 GO:0031116 GO:0031122 GO:0031334 GO:0031503 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032153 GO:0032155 GO:0032271 GO:0032273 GO:0032501 GO:0032502 GO:0032886 GO:0032991 GO:0033036 GO:0033043 GO:0033566 GO:0034613 GO:0034622 GO:0034629 GO:0043015 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044450 GO:0044464 GO:0046785 GO:0048229 GO:0048285 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051179 GO:0051225 GO:0051258 GO:0051298 GO:0051321 GO:0051415 GO:0051418 GO:0051493 GO:0051495 GO:0051641 GO:0055028 GO:0065003 GO:0065007 GO:0070013 GO:0070507 GO:0070727 GO:0070925 GO:0071840 GO:0071944 GO:0090063 GO:0090307 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0140014 GO:1902850 GO:1902903 GO:1902905 GO:1903047
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

139

Amino Acids

16.12

Weight (kDa)

6.32

Isoelectric Point (pI)

36.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 159
Acc36I ACCTGC 1 cut(s) 159
AciI CCGC 1 cut(s) 14
AgsI TTSAA 2 cut(s) 122, 239
AluBI AGCT 1 cut(s) 91
AluI AGCT 1 cut(s) 91
Alw21I GWGCWC 1 cut(s) 304
Alw26I GTCTC 1 cut(s) 43
Alw44I GTGCAC 1 cut(s) 300
ApaLI GTGCAC 1 cut(s) 300
ApeKI GCWGC 1 cut(s) 11
AsuHPI GGTGA 1 cut(s) 218
BaeGI GKGCMC 1 cut(s) 304
Bbv12I GWGCWC 1 cut(s) 304
BccI CCATC 2 cut(s) 50, 277
BcoDI GTCTC 1 cut(s) 43
BfuAI ACCTGC 1 cut(s) 159
BisI GCNGC 1 cut(s) 12
BlsI GCNGC 1 cut(s) 13
BmsI GCATC 2 cut(s) 256, 366
BpuEI CTTGAG 1 cut(s) 342
BsaI GGTCTC 1 cut(s) 43
BsaJI CCNNGG 1 cut(s) 158
Bse1I ACTGG 1 cut(s) 309
Bse3DI GCAATG 1 cut(s) 216
BseDI CCNNGG 1 cut(s) 158
BseMI GCAATG 1 cut(s) 216
BseMII CTCAG 1 cut(s) 213
BseNI ACTGG 1 cut(s) 309
BseRI GAGGAG 1 cut(s) 349
BseSI GKGCMC 1 cut(s) 304
BsiHKAI GWGCWC 1 cut(s) 304
BsmAI GTCTC 1 cut(s) 43
Bso31I GGTCTC 1 cut(s) 43
Bsp1286I GDGCHC 1 cut(s) 304
Bsp143I GATC 1 cut(s) 196
BspACI CCGC 1 cut(s) 14
BspCNI CTCAG 1 cut(s) 214
BspMI ACCTGC 1 cut(s) 159
BspTNI GGTCTC 1 cut(s) 43
BsrDI GCAATG 1 cut(s) 216
BsrI ACTGG 1 cut(s) 309
BssECI CCNNGG 1 cut(s) 158
BssMI GATC 1 cut(s) 196
Bst4CI ACNGT 2 cut(s) 126, 347
Bst6I CTCTTC 1 cut(s) 240
BstDEI CTNAG 1 cut(s) 222
BstKTI GATC 1 cut(s) 199
BstMAI GTCTC 1 cut(s) 43
BstMBI GATC 1 cut(s) 196
BstMWI GCNNNNNNNGC 1 cut(s) 137
BstSLI GKGCMC 1 cut(s) 304
BtsIMutI CAGTG 1 cut(s) 302
BveI ACCTGC 1 cut(s) 159
CviJI RGCY 4 cut(s) 11, 91, 151, 322
CviKI_1 RGCY 4 cut(s) 11, 91, 151, 322
DdeI CTNAG 1 cut(s) 222
DpnI GATC 1 cut(s) 198
DpnII GATC 1 cut(s) 196
Eam1104I CTCTTC 1 cut(s) 240
EarI CTCTTC 1 cut(s) 240
Eco31I GGTCTC 1 cut(s) 43
FaiI YATR 9 cut(s) 180, 204, 311, 328, 354, 368, 374, 399, 414
Fnu4HI GCNGC 1 cut(s) 12
Fsp4HI GCNGC 1 cut(s) 12
GluI GCNGC 1 cut(s) 12
HinfI GANTC 2 cut(s) 186, 275
HphI GGTGA 1 cut(s) 218
Hpy166II GTNNAC 1 cut(s) 302
Hpy188I TCNGA 2 cut(s) 58, 159
Hpy188III TCNNGA 2 cut(s) 263, 403
Hpy8I GTNNAC 1 cut(s) 302
HpyAV CCTTC 3 cut(s) 79, 176, 400
HpyCH4III ACNGT 2 cut(s) 126, 347
HpyCH4V TGCA 4 cut(s) 33, 140, 168, 302
HpyF10VI GCNNNNNNNGC 1 cut(s) 137
HpyF3I CTNAG 1 cut(s) 222
Kzo9I GATC 1 cut(s) 196
LmnI GCTCC 1 cut(s) 88
LpnPI CCDG 2 cut(s) 154, 290
LweI GCATC 2 cut(s) 256, 366
MaeIII GTNAC 1 cut(s) 286
MalI GATC 1 cut(s) 198
MboI GATC 1 cut(s) 196
MboII GAAGA 1 cut(s) 227
MhlI GDGCHC 1 cut(s) 304
MluCI AATT 1 cut(s) 106
MlyI GAGTC 1 cut(s) 195
MnlI CCTC 5 cut(s) 141, 153, 285, 327, 332
MseI TTAA 1 cut(s) 252
MslI CAYNNNNRTG 1 cut(s) 371
MwoI GCNNNNNNNGC 1 cut(s) 137
NdeII GATC 1 cut(s) 196
PaqCI CACCTGC 1 cut(s) 159
PfeI GAWTC 1 cut(s) 275
PkrI GCNGC 1 cut(s) 13
PleI GAGTC 1 cut(s) 194
PpsI GAGTC 1 cut(s) 194
RseI CAYNNNNRTG 1 cut(s) 371
SaqAI TTAA 1 cut(s) 252
SatI GCNGC 1 cut(s) 12
Sau3AI GATC 1 cut(s) 196
SchI GAGTC 1 cut(s) 195
SduI GDGCHC 1 cut(s) 304
SetI ASST 3 cut(s) 39, 93, 173
SfaNI GCATC 2 cut(s) 256, 366
SmiMI CAYNNNNRTG 1 cut(s) 371
SmlI CTYRAG 1 cut(s) 357
SmoI CTYRAG 1 cut(s) 357
Sse9I AATT 1 cut(s) 106
SsiI CCGC 1 cut(s) 14
TaaI ACNGT 2 cut(s) 126, 347
TaqI TCGA 2 cut(s) 83, 146
TasI AATT 1 cut(s) 106
TfiI GAWTC 1 cut(s) 275
Tru1I TTAA 1 cut(s) 252
Tru9I TTAA 1 cut(s) 252
TscAI CASTG 1 cut(s) 309
TseI GCWGC 1 cut(s) 11
TspDTI ATGAA 4 cut(s) 195, 205, 267, 399
TspRI CASTG 1 cut(s) 309
VneI GTGCAC 1 cut(s) 300
XcmI CCANNNNNNNNNTGG 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.