Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002176.1

Orthogroup ID

OG0015770

Physical Location & Seq

Genomic Coordinates Reverse (-)

70724 .. 70978

Gene Structure 255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002176.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

atgtgtctgactgagactttggatgagatggttcagaacgggactctcagtcctgagcttgccattcaggttctggttcagttcgaaaaaggagacccggccagaactcctccgtccagccatctctttgcagcgcaccaccggcgtttgactcctcttctcagcgccaacatgcctatggtggtggaccatacatgcacagatagtggggagagattcgaaacccaaaagcctgaagcttttccgaaggattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003712 GO:0003713 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005672 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0016591 GO:0017025 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022607 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051090 GO:0051091 GO:0051123 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0055029 GO:0060255 GO:0061695 GO:0065003 GO:0065004 GO:0065007 GO:0065009 GO:0070013 GO:0070897 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 ko05203 map03022 map05203

Pfam Domains

Protein Families

TFIIA_gamma_C TFIIA_gamma_N

Protein Analysis

84

Amino Acids

9.36

Weight (kDa)

5.2

Isoelectric Point (pI)

40.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015770)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000009962
rosa_multiflora	Rmu_sc0000907.1_g000019 Rmu_sc0002176.1_g000021 Rmu_sc0002784.1_g000051 Rmu_ssc0000189.1_g000012
rosa_roxburghii	Rroxscaffold_1G00006240 Rroxscaffold_1G00027140 Rroxscaffold_1G00034790 Rroxscaffold_2G00096640 Rroxscaffold_2G00099810
rosa_rugosa	Rorug07G0130300 Rorug07G0130400
rosa_samantha	Rh4BG038300 Rh5CG419300 Rh6DG247100 Rh7BG237100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	99
AcuI	CTGAAG	1 cut(s)	255
AhdI	GACNNNNNGTC	1 cut(s)	48
AluBI	AGCT	2 cut(s)	58, 239
AluI	AGCT	2 cut(s)	58, 239
Alw26I	GTCTC	2 cut(s)	8, 87
AlwNI	CAGNNNCTG	1 cut(s)	73
AoxI	GGCC	1 cut(s)	99
ApeKI	GCWGC	1 cut(s)	131
ArsI	GACNNNNNNTTYG	1 cut(s)	33
Asp700I	GAANNNNTTC	1 cut(s)	240
AspLEI	GCGC	2 cut(s)	136, 167
AspS9I	GGNCC	1 cut(s)	187
AsuC2I	CCSGG	1 cut(s)	98
AsuII	TTCGAA	2 cut(s)	84, 219
AvaII	GGWCC	1 cut(s)	187
BbvI	GCAGC	1 cut(s)	143
BccI	CCATC	2 cut(s)	22, 129
BcnI	CCSGG	1 cut(s)	98
BcoDI	GTCTC	2 cut(s)	8, 87
BfoI	RGCGCY	1 cut(s)	168
BisI	GCNGC	1 cut(s)	132
BlsI	GCNGC	1 cut(s)	133
Bme1390I	CCNGG	1 cut(s)	98
Bme18I	GGWCC	1 cut(s)	187
BmeRI	GACNNNNNGTC	1 cut(s)	48
BmgT120I	GGNCC	1 cut(s)	187
BmrFI	CCNGG	1 cut(s)	98
Bpu10I	CCTNAGC	1 cut(s)	54
Bpu14I	TTCGAA	2 cut(s)	84, 219
BpuMI	CCSGG	1 cut(s)	98
BsaI	GGTCTC	1 cut(s)	87
Bse118I	RCCGGY	1 cut(s)	141
BseGI	GGATG	1 cut(s)	28
BseMII	CTCAG	3 cut(s)	45, 61, 175
BseRI	GAGGAG	2 cut(s)	99, 144
BseXI	GCAGC	1 cut(s)	143
BshFI	GGCC	1 cut(s)	101
BsiSI	CCGG	2 cut(s)	98, 142
BslFI	GGGAC	1 cut(s)	55
BsmAI	GTCTC	2 cut(s)	8, 87
BsmFI	GGGAC	1 cut(s)	55
BsnI	GGCC	1 cut(s)	101
Bso31I	GGTCTC	1 cut(s)	87
Bsp119I	TTCGAA	2 cut(s)	84, 219
BspANI	GGCC	1 cut(s)	101
BspCNI	CTCAG	4 cut(s)	4, 46, 60, 174
BspT104I	TTCGAA	2 cut(s)	84, 219
BspTNI	GGTCTC	1 cut(s)	87
BsrFI	RCCGGY	1 cut(s)	141
BssAI	RCCGGY	1 cut(s)	141
Bst6I	CTCTTC	1 cut(s)	162
BstBI	TTCGAA	2 cut(s)	84, 219
BstC8I	GCNNGC	1 cut(s)	60
BstDEI	CTNAG	4 cut(s)	12, 47, 54, 161
BstF5I	GGATG	1 cut(s)	28
BstH2I	RGCGCY	1 cut(s)	168
BstHHI	GCGC	2 cut(s)	136, 167
BstMAI	GTCTC	2 cut(s)	8, 87
BstMWI	GCNNNNNNNGC	1 cut(s)	142
BstNSI	RCATGY	2 cut(s)	175, 198
BstSCI	CCNGG	1 cut(s)	96
BstV1I	GCAGC	1 cut(s)	143
BsuRI	GGCC	1 cut(s)	101
BtsCI	GGATG	1 cut(s)	28
Cac8I	GCNNGC	1 cut(s)	60
CaiI	CAGNNNCTG	1 cut(s)	73
CfoI	GCGC	2 cut(s)	136, 167
Cfr10I	RCCGGY	1 cut(s)	141
Cfr13I	GGNCC	1 cut(s)	187
CviAII	CATG	2 cut(s)	172, 195
CviJI	RGCY	5 cut(s)	58, 101, 120, 232, 239
CviKI_1	RGCY	5 cut(s)	58, 101, 120, 232, 239
DdeI	CTNAG	4 cut(s)	12, 47, 54, 161
DriI	GACNNNNNGTC	1 cut(s)	48
EaeI	YGGCCR	1 cut(s)	99
Eam1104I	CTCTTC	1 cut(s)	162
Eam1105I	GACNNNNNGTC	1 cut(s)	48
EarI	CTCTTC	1 cut(s)	162
Eco31I	GGTCTC	1 cut(s)	87
Eco47I	GGWCC	1 cut(s)	187
Eco57I	CTGAAG	1 cut(s)	255
FaeI	CATG	2 cut(s)	175, 198
FaiI	YATR	4 cut(s)	173, 179, 192, 196
FaqI	GGGAC	1 cut(s)	55
FatI	CATG	2 cut(s)	171, 194
Fnu4HI	GCNGC	1 cut(s)	132
FokI	GGATG	1 cut(s)	35
Fsp4HI	GCNGC	1 cut(s)	132
GlaI	GCGC	2 cut(s)	135, 166
GluI	GCNGC	1 cut(s)	132
HaeII	RGCGCY	1 cut(s)	168
HaeIII	GGCC	1 cut(s)	101
HapII	CCGG	2 cut(s)	98, 142
HhaI	GCGC	2 cut(s)	136, 167
Hin1II	CATG	2 cut(s)	175, 198
Hin6I	GCGC	2 cut(s)	134, 165
HinP1I	GCGC	2 cut(s)	134, 165
HindIII	AAGCTT	1 cut(s)	237
HinfI	GANTC	3 cut(s)	43, 151, 216
HpaII	CCGG	2 cut(s)	98, 142
Hpy166II	GTNNAC	1 cut(s)	187
Hpy188I	TCNGA	3 cut(s)	9, 36, 246
Hpy188III	TCNNGA	1 cut(s)	53
Hpy8I	GTNNAC	1 cut(s)	187
HpyAV	CCTTC	1 cut(s)	241
HpyCH4V	TGCA	2 cut(s)	131, 198
HpyF10VI	GCNNNNNNNGC	1 cut(s)	142
HpyF3I	CTNAG	4 cut(s)	12, 47, 54, 161
Hsp92II	CATG	2 cut(s)	175, 198
HspAI	GCGC	2 cut(s)	134, 165
LpnPI	CCDG	8 cut(s)	53, 59, 66, 111, 115, 130, 155, 246
Lsp1109I	GCAGC	1 cut(s)	143
MboII	GAAGA	1 cut(s)	149
MlyI	GAGTC	2 cut(s)	37, 145
MnlI	CCTC	2 cut(s)	120, 165
MroXI	GAANNNNTTC	1 cut(s)	240
MslI	CAYNNNNRTG	1 cut(s)	176
MspI	CCGG	2 cut(s)	98, 142
MspR9I	CCNGG	1 cut(s)	98
MwoI	GCNNNNNNNGC	1 cut(s)	142
NciI	CCSGG	1 cut(s)	98
NlaIII	CATG	2 cut(s)	175, 198
NspI	RCATGY	2 cut(s)	175, 198
NspV	TTCGAA	2 cut(s)	84, 219
PdmI	GAANNNNTTC	1 cut(s)	240
PfeI	GAWTC	1 cut(s)	216
PkrI	GCNGC	1 cut(s)	133
PleI	GAGTC	2 cut(s)	37, 145
PpsI	GAGTC	2 cut(s)	37, 145
PspPI	GGNCC	1 cut(s)	187
PstNI	CAGNNNCTG	1 cut(s)	73
RseI	CAYNNNNRTG	1 cut(s)	176
SatI	GCNGC	1 cut(s)	132
Sau96I	GGNCC	1 cut(s)	187
SchI	GAGTC	2 cut(s)	37, 145
ScrFI	CCNGG	1 cut(s)	98
SetI	ASST	3 cut(s)	60, 72, 241
SfuI	TTCGAA	2 cut(s)	84, 219
SgrAI	CRCCGGYG	1 cut(s)	141
SinI	GGWCC	1 cut(s)	187
SmiMI	CAYNNNNRTG	1 cut(s)	176
StyD4I	CCNGG	1 cut(s)	96
TaqI	TCGA	2 cut(s)	84, 219
TfiI	GAWTC	1 cut(s)	216
TseI	GCWGC	1 cut(s)	131
TspGWI	ACGGA	1 cut(s)	102
VpaK11BI	GGWCC	1 cut(s)	187
XceI	RCATGY	2 cut(s)	175, 198
XcmI	CCANNNNNNNNNTGG	2 cut(s)	70, 175
XmnI	GAANNNNTTC	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.