Rh5CG419300

Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Reverse (-)
57490793 .. 57502840
12048 bp
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UTR
Exon/CDS
Intron
Rh5CG419300.1

Sequence Viewer

Length: 435 bp
ATGTTATCGAAGGAGCTTGGTAATTACAGACATGCTCTTACTGATGCTGAGGAAGCAATTAGGCTCAGAAACACTAATGTCAAGTTTCAGAGGCTCTTTCCGAGGATTTGCAGGTGGGTCTATGAAGGAGTCATTGATGATCGTTATGGTGAATGTTTCATTGCTGAGAACAAATCTCTTCAAAAGATGCTGTTTAAGGGTTTTCCCGATGCTTGTGATTCATTGATGGTTCTGAGGAATGGTGCACTGGACATAAAGACAGAGCCTTTACCAAGTTGGTGGTTAAAATCCATCATCCAAGCCATCACATGCTCATTAGACAAGAGTATTGTAGCAGGAGAAAATAATAGACTTGATGGAATTTTCTTATTGCCAGCTTGTGGCATAACGGAAATTTTCGAGGAGAAAAAGGGTAGAAGTAACAGGTCGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000226 GO:0000278 GO:0000280 GO:0000923 GO:0000930 GO:0003674 GO:0005198 GO:0005200 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005654 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0005874 GO:0005881 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0007020 GO:0007049 GO:0007051 GO:0007052 GO:0007098 GO:0007275 GO:0008092 GO:0008104 GO:0008150 GO:0008275 GO:0009987 GO:0010638 GO:0010968 GO:0012505 GO:0015630 GO:0015631 GO:0016043 GO:0022402 GO:0022414 GO:0022607 GO:0030863 GO:0030981 GO:0031023 GO:0031109 GO:0031110 GO:0031112 GO:0031113 GO:0031116 GO:0031122 GO:0031334 GO:0031503 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032153 GO:0032155 GO:0032271 GO:0032273 GO:0032501 GO:0032502 GO:0032886 GO:0032991 GO:0033036 GO:0033043 GO:0033566 GO:0034613 GO:0034622 GO:0034629 GO:0043015 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044450 GO:0044464 GO:0046785 GO:0048229 GO:0048285 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051179 GO:0051225 GO:0051258 GO:0051298 GO:0051321 GO:0051415 GO:0051418 GO:0051493 GO:0051495 GO:0051641 GO:0055028 GO:0065003 GO:0065007 GO:0070013 GO:0070507 GO:0070727 GO:0070925 GO:0071840 GO:0071944 GO:0090063 GO:0090307 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0140014 GO:1902850 GO:1902903 GO:1902905 GO:1903047
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

144

Amino Acids

16.52

Weight (kDa)

8.29

Isoelectric Point (pI)

46.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 102
Acc36I ACCTGC 1 cut(s) 102
AccB7I CCANNNNNTGG 1 cut(s) 380
AcsI RAATTY 2 cut(s) 360, 393
AfiI CCNNNNNNNGG 1 cut(s) 380
AgsI TTSAA 1 cut(s) 182
AluBI AGCT 2 cut(s) 16, 377
AluI AGCT 2 cut(s) 16, 377
Alw21I GWGCWC 1 cut(s) 247
Alw44I GTGCAC 1 cut(s) 243
ApaLI GTGCAC 1 cut(s) 243
ApoI RAATTY 2 cut(s) 360, 393
AsuHPI GGTGA 1 cut(s) 161
BaeGI GKGCMC 1 cut(s) 247
Bbv12I GWGCWC 1 cut(s) 247
BbvCI CCTCAGC 1 cut(s) 48
BccI CCATC 4 cut(s) 220, 299, 311, 350
BfuAI ACCTGC 1 cut(s) 102
BmsI GCATC 3 cut(s) 34, 177, 199
Bpu10I CCTNAGC 1 cut(s) 48
BsaJI CCNNGG 1 cut(s) 101
Bsc4I CCNNNNNNNGG 1 cut(s) 380
Bse1I ACTGG 1 cut(s) 252
Bse3DI GCAATG 1 cut(s) 159
BseDI CCNNGG 1 cut(s) 101
BseGI GGATG 1 cut(s) 294
BseLI CCNNNNNNNGG 1 cut(s) 380
BseMI GCAATG 1 cut(s) 159
BseMII CTCAG 4 cut(s) 39, 79, 156, 224
BseNI ACTGG 1 cut(s) 252
BseRI GAGGAG 1 cut(s) 416
BseSI GKGCMC 1 cut(s) 247
BsiHKAI GWGCWC 1 cut(s) 247
BslI CCNNNNNNNGG 1 cut(s) 380
Bsp1286I GDGCHC 1 cut(s) 247
Bsp143I GATC 1 cut(s) 139
BspCNI CTCAG 4 cut(s) 40, 78, 157, 225
BspMI ACCTGC 1 cut(s) 102
BsrDI GCAATG 1 cut(s) 159
BsrI ACTGG 1 cut(s) 252
BssECI CCNNGG 1 cut(s) 101
BssMI GATC 1 cut(s) 139
Bst6I CTCTTC 1 cut(s) 183
BstC8I GCNNGC 1 cut(s) 375
BstDEI CTNAG 4 cut(s) 48, 65, 165, 233
BstF5I GGATG 1 cut(s) 294
BstKTI GATC 1 cut(s) 142
BstMBI GATC 1 cut(s) 139
BstMWI GCNNNNNNNGC 1 cut(s) 53
BstNSI RCATGY 2 cut(s) 35, 312
BstSLI GKGCMC 1 cut(s) 247
BstXI CCANNNNNNTGG 1 cut(s) 279
BtsCI GGATG 1 cut(s) 294
BtsIMutI CAGTG 1 cut(s) 245
BveI ACCTGC 1 cut(s) 102
Cac8I GCNNGC 1 cut(s) 375
CviAII CATG 2 cut(s) 32, 309
CviJI RGCY 6 cut(s) 16, 64, 94, 265, 302, 377
CviKI_1 RGCY 6 cut(s) 16, 64, 94, 265, 302, 377
DdeI CTNAG 4 cut(s) 48, 65, 165, 233
DpnI GATC 1 cut(s) 141
DpnII GATC 1 cut(s) 139
Eam1104I CTCTTC 1 cut(s) 183
EarI CTCTTC 1 cut(s) 183
FaeI CATG 2 cut(s) 35, 312
FaiI YATR 6 cut(s) 33, 123, 147, 254, 310, 386
FatI CATG 2 cut(s) 31, 308
FokI GGATG 1 cut(s) 281
Hin1II CATG 2 cut(s) 35, 312
HinfI GANTC 2 cut(s) 129, 218
HphI GGTGA 1 cut(s) 161
Hpy166II GTNNAC 1 cut(s) 245
Hpy188I TCNGA 4 cut(s) 68, 90, 102, 234
Hpy188III TCNNGA 1 cut(s) 206
Hpy8I GTNNAC 1 cut(s) 245
HpyAV CCTTC 2 cut(s) 4, 119
HpyCH4V TGCA 2 cut(s) 111, 245
HpyF10VI GCNNNNNNNGC 1 cut(s) 53
HpyF3I CTNAG 4 cut(s) 48, 65, 165, 233
Hsp92II CATG 2 cut(s) 35, 312
Kzo9I GATC 1 cut(s) 139
LmnI GCTCC 1 cut(s) 13
LpnPI CCDG 5 cut(s) 97, 233, 321, 387, 409
LweI GCATC 3 cut(s) 34, 177, 199
MaeIII GTNAC 1 cut(s) 419
MalI GATC 1 cut(s) 141
MboI GATC 1 cut(s) 139
MboII GAAGA 1 cut(s) 170
MhlI GDGCHC 1 cut(s) 247
MluCI AATT 4 cut(s) 22, 57, 360, 393
MlyI GAGTC 1 cut(s) 138
MnlI CCTC 5 cut(s) 43, 84, 96, 228, 394
MseI TTAA 2 cut(s) 195, 284
MwoI GCNNNNNNNGC 1 cut(s) 53
NdeII GATC 1 cut(s) 139
NlaIII CATG 2 cut(s) 35, 312
NspI RCATGY 2 cut(s) 35, 312
PaqCI CACCTGC 1 cut(s) 102
PfeI GAWTC 1 cut(s) 218
PflMI CCANNNNNTGG 1 cut(s) 380
PleI GAGTC 1 cut(s) 137
PpsI GAGTC 1 cut(s) 137
SaqAI TTAA 2 cut(s) 195, 284
Sau3AI GATC 1 cut(s) 139
SchI GAGTC 1 cut(s) 138
SduI GDGCHC 1 cut(s) 247
SetI ASST 4 cut(s) 18, 116, 379, 428
SfaNI GCATC 3 cut(s) 34, 177, 199
Sse9I AATT 4 cut(s) 22, 57, 360, 393
TaqI TCGA 2 cut(s) 8, 399
TasI AATT 4 cut(s) 22, 57, 360, 393
TfiI GAWTC 1 cut(s) 218
Tru1I TTAA 2 cut(s) 195, 284
Tru9I TTAA 2 cut(s) 195, 284
TscAI CASTG 1 cut(s) 252
TspDTI ATGAA 3 cut(s) 138, 148, 210
TspGWI ACGGA 1 cut(s) 404
TspRI CASTG 1 cut(s) 252
Van91I CCANNNNNTGG 1 cut(s) 380
VneI GTGCAC 1 cut(s) 243
XapI RAATTY 2 cut(s) 360, 393
XceI RCATGY 2 cut(s) 35, 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.