Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0006434

Physical Location & Seq

Genomic Coordinates Forward (+)

62119793 .. 62121523

Gene Structure 1731 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010047

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGAGTGACCTTTTAGAGATAGATTCAGACTCTCCACTATTTCTATCGCCAAAGCTAAAGGCAAAAAATTGGCAGAAAGCACTGGAGCTCTATGAGGATCTTAAGTCAGCTAAAATTGAGCTGACTGTTTCAACTGTCAATGCTTTGATTACTGCCCTATGTGATGGGGATCAACTACAGAAGGCTATGGAAGTTCTGTCGGAAATGAAGAGTATAGGACTGCGTCCAAACAGTATAACATACTCCATACTTGTAGTGGCAAGTGAAAAGAAGGATGATCTAGAAGATGGCCTGCTGCTCCTTTCTCAAGCTGAAAAGGATAAAGTTGTTCCAAACCTTGTCATGTGTAGATGCATTATAGGTGAGTTTACATTGGTAGCTAATTTTTCATGTCCTTCTCACTTTGGCATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010468 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0016070 GO:0016787 GO:0016788 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043487 GO:0043488 GO:0043489 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045934 GO:0046483 GO:0048255 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1902369 GO:1902373 GO:1903311 GO:1903312

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

138

Amino Acids

15.1

Weight (kDa)

4.75

Isoelectric Point (pI)

40.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	19 - 55	4.3e-06	PPR repeat family
PPR_long	PF17177	20 - 113	7.1e-06	Pentacotripeptide-repeat region of PRORP
TPR_24	PF23276	27 - 113	7.1e-07	Fungal tetratrico peptide repeats
PPR_3	PF13812	30 - 85	3.2e-09	Pentatricopeptide repeat domain
PPR_2	PF13041	43 - 85	2.7e-12	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0006434)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000010047 RLG00000020064 RLG00000028774
rosa_multiflora	Rmu_sc0001306.1_g000022 Rmu_sc0001438.1_g000035
rosa_roxburghii	Rroxscaffold_2G00101450 Rroxscaffold_7G00192090
rosa_rugosa	Rorug05G0119200 Rorug05G0119300 Rorug05G0119400 Rorug05G0119500 Rorug05G0119600 Rorug05G0119600 Rorug05G0119700 Rorug05G0119800 Rorug05G0119900 Rorug05G0120000
rosa_samantha	Rh2AG339800 Rh2AG437400 Rh2CG423700 Rh2DG357000 Rh2DG455400 Rh3CG365400 Rh6BG318500 Rh6CG026900 Rh7AG270000 Rh7CG289200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	105, 177
AflII	CTTAAG	1 cut(s)	101
AgsI	TTSAA	1 cut(s)	132
AluBI	AGCT	6 cut(s)	55, 88, 110, 121, 311, 380
AluI	AGCT	6 cut(s)	55, 88, 110, 121, 311, 380
Alw21I	GWGCWC	1 cut(s)	90
AlwI	GGATC	2 cut(s)	105, 177
AoxI	GGCC	1 cut(s)	289
ApeKI	GCWGC	1 cut(s)	295
AsuHPI	GGTGA	1 cut(s)	374
BanII	GRGCYC	1 cut(s)	90
Bbv12I	GWGCWC	1 cut(s)	90
BbvI	GCAGC	1 cut(s)	282
BccI	CCATC	2 cut(s)	158, 281
BfaI	CTAG	1 cut(s)	281
BfmI	CTRYAG	1 cut(s)	176
BfrI	CTTAAG	1 cut(s)	101
BisI	GCNGC	1 cut(s)	296
BlsI	GCNGC	1 cut(s)	297
BmsI	GCATC	1 cut(s)	341
BpmI	CTGGAG	1 cut(s)	104
BpuEI	CTTGAG	1 cut(s)	291
BsaBI	GATNNNNATC	1 cut(s)	168
Bse1I	ACTGG	1 cut(s)	87
Bse8I	GATNNNNATC	1 cut(s)	168
BseGI	GGATG	1 cut(s)	280
BseJI	GATNNNNATC	1 cut(s)	168
BseNI	ACTGG	1 cut(s)	87
BseXI	GCAGC	1 cut(s)	282
BshFI	GGCC	1 cut(s)	291
BsiHKAI	GWGCWC	1 cut(s)	90
BsnI	GGCC	1 cut(s)	291
Bsp1286I	GDGCHC	1 cut(s)	90
Bsp143I	GATC	3 cut(s)	97, 169, 277
BspANI	GGCC	1 cut(s)	291
BspPI	GGATC	2 cut(s)	105, 177
BspTI	CTTAAG	1 cut(s)	101
BsrI	ACTGG	1 cut(s)	87
BssMI	GATC	3 cut(s)	97, 169, 277
Bst4CI	ACNGT	3 cut(s)	127, 136, 233
Bst6I	CTCTTC	1 cut(s)	203
BstAFI	CTTAAG	1 cut(s)	101
BstC8I	GCNNGC	1 cut(s)	293
BstF5I	GGATG	1 cut(s)	280
BstKTI	GATC	3 cut(s)	100, 172, 280
BstMBI	GATC	3 cut(s)	97, 169, 277
BstSFI	CTRYAG	1 cut(s)	176
BstV1I	GCAGC	1 cut(s)	282
BstX2I	RGATCY	1 cut(s)	97
BstYI	RGATCY	1 cut(s)	97
BsuRI	GGCC	1 cut(s)	291
BtsCI	GGATG	1 cut(s)	280
BtsIMutI	CAGTG	1 cut(s)	80
Cac8I	GCNNGC	1 cut(s)	293
CseI	GACGC	1 cut(s)	212
CviAII	CATG	2 cut(s)	343, 390
CviJI	RGCY	8 cut(s)	55, 88, 110, 121, 185, 291, 311, 380
CviKI_1	RGCY	8 cut(s)	55, 88, 110, 121, 185, 291, 311, 380
DpnI	GATC	3 cut(s)	99, 171, 279
DpnII	GATC	3 cut(s)	97, 169, 277
Eam1104I	CTCTTC	1 cut(s)	203
EarI	CTCTTC	1 cut(s)	203
Ecl136II	GAGCTC	1 cut(s)	88
Eco24I	GRGCYC	1 cut(s)	90
Eco53kI	GAGCTC	1 cut(s)	88
EcoICRI	GAGCTC	1 cut(s)	88
EcoT22I	ATGCAT	1 cut(s)	356
EcoT38I	GRGCYC	1 cut(s)	90
FaeI	CATG	2 cut(s)	346, 393
FatI	CATG	2 cut(s)	342, 389
Fnu4HI	GCNGC	1 cut(s)	296
FokI	GGATG	1 cut(s)	287
FriOI	GRGCYC	1 cut(s)	90
Fsp4HI	GCNGC	1 cut(s)	296
FspBI	CTAG	1 cut(s)	281
GluI	GCNGC	1 cut(s)	296
GsuI	CTGGAG	1 cut(s)	104
HaeIII	GGCC	1 cut(s)	291
HgaI	GACGC	1 cut(s)	212
Hin1II	CATG	2 cut(s)	346, 393
HinfI	GANTC	2 cut(s)	23, 29
HphI	GGTGA	1 cut(s)	374
Hpy166II	GTNNAC	1 cut(s)	369
Hpy188I	TCNGA	3 cut(s)	28, 202, 413
Hpy188III	TCNNGA	1 cut(s)	281
Hpy8I	GTNNAC	1 cut(s)	369
HpyAV	CCTTC	3 cut(s)	175, 265, 405
HpyCH4III	ACNGT	3 cut(s)	127, 136, 233
HpyCH4V	TGCA	1 cut(s)	354
Hsp92II	CATG	2 cut(s)	346, 393
Kzo9I	GATC	3 cut(s)	97, 169, 277
LmnI	GCTCC	2 cut(s)	85, 303
LpnPI	CCDG	2 cut(s)	68, 305
Lsp1109I	GCAGC	1 cut(s)	282
LweI	GCATC	1 cut(s)	341
MaeI	CTAG	1 cut(s)	281
MaeIII	GTNAC	1 cut(s)	5
MalI	GATC	3 cut(s)	99, 171, 279
MboI	GATC	3 cut(s)	97, 169, 277
MboII	GAAGA	2 cut(s)	220, 296
MflI	RGATCY	1 cut(s)	97
MhlI	GDGCHC	1 cut(s)	90
MluCI	AATT	3 cut(s)	67, 114, 382
MlyI	GAGTC	1 cut(s)	23
MmeI	TCCRAC	1 cut(s)	180
MnlI	CCTC	1 cut(s)	88
Mph1103I	ATGCAT	1 cut(s)	356
MseI	TTAA	1 cut(s)	102
MspCI	CTTAAG	1 cut(s)	101
NdeII	GATC	3 cut(s)	97, 169, 277
NlaIII	CATG	2 cut(s)	346, 393
NmuCI	GTSAC	1 cut(s)	5
NsiI	ATGCAT	1 cut(s)	356
PfeI	GAWTC	1 cut(s)	23
PflFI	GACNNNGTC	1 cut(s)	222
PkrI	GCNGC	1 cut(s)	297
PleI	GAGTC	1 cut(s)	23
PpsI	GAGTC	1 cut(s)	23
Psp124BI	GAGCTC	1 cut(s)	90
PsuI	RGATCY	1 cut(s)	97
PsyI	GACNNNGTC	1 cut(s)	222
SacI	GAGCTC	1 cut(s)	90
SaqAI	TTAA	1 cut(s)	102
SatI	GCNGC	1 cut(s)	296
Sau3AI	GATC	3 cut(s)	97, 169, 277
SchI	GAGTC	1 cut(s)	23
SduI	GDGCHC	1 cut(s)	90
SetI	ASST	9 cut(s)	12, 57, 90, 112, 123, 313, 339, 364, 382
SfaNI	GCATC	1 cut(s)	341
SfcI	CTRYAG	1 cut(s)	176
SgeI	CNNG	9 cut(s)	95, 263, 273, 293, 304, 320, 350, 355, 402
SmlI	CTYRAG	2 cut(s)	101, 306
SmoI	CTYRAG	2 cut(s)	101, 306
Sse9I	AATT	3 cut(s)	67, 114, 382
SspMI	CTAG	1 cut(s)	281
SstI	GAGCTC	1 cut(s)	90
TaaI	ACNGT	3 cut(s)	127, 136, 233
TasI	AATT	3 cut(s)	67, 114, 382
TfiI	GAWTC	1 cut(s)	23
Tru1I	TTAA	1 cut(s)	102
Tru9I	TTAA	1 cut(s)	102
TscAI	CASTG	1 cut(s)	87
TseFI	GTSAC	1 cut(s)	5
TseI	GCWGC	1 cut(s)	295
Tsp45I	GTSAC	1 cut(s)	5
TspDTI	ATGAA	2 cut(s)	221, 378
TspRI	CASTG	1 cut(s)	87
Tth111I	GACNNNGTC	1 cut(s)	222
Vha464I	CTTAAG	1 cut(s)	101
XbaI	TCTAGA	1 cut(s)	280
XcmI	CCANNNNNNNNNTGG	1 cut(s)	253
XspI	CTAG	1 cut(s)	281
Zsp2I	ATGCAT	1 cut(s)	356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.