Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0006434

Physical Location & Seq

Genomic Coordinates Forward (+)

10539433 .. 10539764

Gene Structure 332 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0119500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGGATTTGCCCAGAATATCACCAAACCTGGAACATCTTGTGGTTGACAACGACATTGCATGTGCACGTTCGGTTGCTGACAATAAGCATGAATGGCATCCACCGGAGTCTGCGGCTGTTTGTTTGGTATCGCACATCAAGACTATTTGCTTCATGAGGAGATTCCAGGGAACTCCAAATGAGGTTAAAGTGGCCAAGTACTTGCAGAAGCATGGCGAGGTTTTGACTTTTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010468 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0016070 GO:0016787 GO:0016788 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043487 GO:0043488 GO:0043489 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045934 GO:0046483 GO:0048255 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1902369 GO:1902373 GO:1903311 GO:1903312

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

78

Amino Acids

8.88

Weight (kDa)

6.5

Isoelectric Point (pI)

49.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBD	PF08387	35 - 75	3.5e-09	FBD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006434)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000010047 RLG00000020064 RLG00000028774
rosa_multiflora	Rmu_sc0001306.1_g000022 Rmu_sc0001438.1_g000035
rosa_roxburghii	Rroxscaffold_2G00101450 Rroxscaffold_7G00192090
rosa_rugosa	Rorug05G0119200 Rorug05G0119300 Rorug05G0119400 Rorug05G0119500 Rorug05G0119600 Rorug05G0119600 Rorug05G0119700 Rorug05G0119800 Rorug05G0119900 Rorug05G0120000
rosa_samantha	Rh2AG339800 Rh2AG437400 Rh2CG423700 Rh2DG357000 Rh2DG455400 Rh3CG365400 Rh6BG318500 Rh6CG026900 Rh7AG270000 Rh7CG289200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	113
AcoI	YGGCCR	1 cut(s)	192
AfaI	GTAC	1 cut(s)	200
AgsI	TTSAA	1 cut(s)	233
AjnI	CCWGG	2 cut(s)	27, 165
Alw21I	GWGCWC	1 cut(s)	67
Alw44I	GTGCAC	1 cut(s)	63
AoxI	GGCC	1 cut(s)	192
ApaLI	GTGCAC	1 cut(s)	63
AsuHPI	GGTGA	1 cut(s)	12
BaeGI	GKGCMC	1 cut(s)	67
BalI	TGGCCA	1 cut(s)	194
Bbv12I	GWGCWC	1 cut(s)	67
BciT130I	CCWGG	2 cut(s)	29, 167
BisI	GCNGC	1 cut(s)	114
BlsI	GCNGC	1 cut(s)	115
BmcAI	AGTACT	1 cut(s)	200
Bme1390I	CCNGG	2 cut(s)	29, 167
BmrFI	CCNGG	2 cut(s)	29, 167
BmsI	GCATC	1 cut(s)	106
BsaJI	CCNNGG	1 cut(s)	166
BsaWI	WCCGGW	1 cut(s)	103
Bse3DI	GCAATG	1 cut(s)	54
BseBI	CCWGG	2 cut(s)	29, 167
BseDI	CCNNGG	1 cut(s)	166
BseGI	GGATG	1 cut(s)	97
BseMI	GCAATG	1 cut(s)	54
BseRI	GAGGAG	1 cut(s)	172
BseSI	GKGCMC	1 cut(s)	67
BshFI	GGCC	1 cut(s)	194
BsiHKAI	GWGCWC	1 cut(s)	67
BsiSI	CCGG	1 cut(s)	104
BsnI	GGCC	1 cut(s)	194
Bsp1286I	GDGCHC	1 cut(s)	67
BspACI	CCGC	1 cut(s)	113
BspANI	GGCC	1 cut(s)	194
BspHI	TCATGA	1 cut(s)	153
BsrDI	GCAATG	1 cut(s)	54
BssECI	CCNNGG	1 cut(s)	166
Bst2UI	CCWGG	2 cut(s)	29, 167
BstF5I	GGATG	1 cut(s)	97
BstMWI	GCNNNNNNNGC	1 cut(s)	94
BstNI	CCWGG	2 cut(s)	29, 167
BstNSI	RCATGY	1 cut(s)	63
BstSCI	CCNGG	2 cut(s)	27, 165
BstSLI	GKGCMC	1 cut(s)	67
BsuRI	GGCC	1 cut(s)	194
BtsCI	GGATG	1 cut(s)	97
CciI	TCATGA	1 cut(s)	153
Csp6I	GTAC	1 cut(s)	199
CviAII	CATG	4 cut(s)	60, 89, 154, 212
CviJI	RGCY	2 cut(s)	116, 194
CviKI_1	RGCY	2 cut(s)	116, 194
CviQI	GTAC	1 cut(s)	199
EaeI	YGGCCR	1 cut(s)	192
EcoRII	CCWGG	2 cut(s)	27, 165
FaeI	CATG	4 cut(s)	63, 92, 157, 215
FaiI	YATR	4 cut(s)	61, 90, 155, 213
FatI	CATG	4 cut(s)	59, 88, 153, 211
Fnu4HI	GCNGC	1 cut(s)	114
FokI	GGATG	1 cut(s)	84
Fsp4HI	GCNGC	1 cut(s)	114
GluI	GCNGC	1 cut(s)	114
HaeIII	GGCC	1 cut(s)	194
HapII	CCGG	1 cut(s)	104
Hin1II	CATG	4 cut(s)	63, 92, 157, 215
HincII	GTYRAC	1 cut(s)	46
HindII	GTYRAC	1 cut(s)	46
HinfI	GANTC	2 cut(s)	107, 162
HpaII	CCGG	1 cut(s)	104
HphI	GGTGA	1 cut(s)	12
Hpy166II	GTNNAC	2 cut(s)	46, 65
Hpy188III	TCNNGA	2 cut(s)	139, 154
Hpy8I	GTNNAC	2 cut(s)	46, 65
HpyCH4IV	ACGT	1 cut(s)	67
HpyCH4V	TGCA	3 cut(s)	59, 65, 205
HpyF10VI	GCNNNNNNNGC	1 cut(s)	94
HpySE526I	ACGT	1 cut(s)	67
Hsp92II	CATG	4 cut(s)	63, 92, 157, 215
LpnPI	CCDG	6 cut(s)	14, 25, 41, 117, 152, 179
LweI	GCATC	1 cut(s)	106
MaeII	ACGT	1 cut(s)	67
MhlI	GDGCHC	1 cut(s)	67
MlsI	TGGCCA	1 cut(s)	194
MluNI	TGGCCA	1 cut(s)	194
MlyI	GAGTC	1 cut(s)	116
MnlI	CCTC	3 cut(s)	150, 175, 211
Mox20I	TGGCCA	1 cut(s)	194
MscI	TGGCCA	1 cut(s)	194
MseI	TTAA	1 cut(s)	186
Msp20I	TGGCCA	1 cut(s)	194
MspI	CCGG	1 cut(s)	104
MspR9I	CCNGG	2 cut(s)	29, 167
MvaI	CCWGG	2 cut(s)	29, 167
MwoI	GCNNNNNNNGC	1 cut(s)	94
NlaIII	CATG	4 cut(s)	63, 92, 157, 215
NspI	RCATGY	1 cut(s)	63
PagI	TCATGA	1 cut(s)	153
PfeI	GAWTC	1 cut(s)	162
PkrI	GCNGC	1 cut(s)	115
PleI	GAGTC	1 cut(s)	115
PpsI	GAGTC	1 cut(s)	115
Psp6I	CCWGG	2 cut(s)	27, 165
PspGI	CCWGG	2 cut(s)	27, 165
RsaI	GTAC	1 cut(s)	200
RsaNI	GTAC	1 cut(s)	199
SaqAI	TTAA	1 cut(s)	186
SatI	GCNGC	1 cut(s)	114
ScaI	AGTACT	1 cut(s)	200
SchI	GAGTC	1 cut(s)	116
ScrFI	CCNGG	2 cut(s)	29, 167
SduI	GDGCHC	1 cut(s)	67
SetI	ASST	4 cut(s)	30, 70, 186, 222
SfaNI	GCATC	1 cut(s)	106
SsiI	CCGC	1 cut(s)	113
StyD4I	CCNGG	2 cut(s)	27, 165
TaiI	ACGT	1 cut(s)	70
TatI	WGTACW	1 cut(s)	198
TauI	GCSGC	1 cut(s)	116
TfiI	GAWTC	1 cut(s)	162
Tru1I	TTAA	1 cut(s)	186
Tru9I	TTAA	1 cut(s)	186
TspDTI	ATGAA	2 cut(s)	105, 142
VneI	GTGCAC	1 cut(s)	63
XceI	RCATGY	1 cut(s)	63
ZrmI	AGTACT	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.