Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0006434

Physical Location & Seq

Genomic Coordinates Forward (+)

10533438 .. 10535257

Gene Structure 1820 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0119400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

ATGGAACACTTAGATAATAGGCTCTGGCTCAGTACTGGCGGCAGTCTTGGACTAATATTTCTAGCCATTGTTGCATGGTGGTTGGTCCAAGTGATAAAGAAAAGGAAAAACAAAAAACAGAAGGAGAAGTTCTTGAAACAAAATGGCGGTTTAGTATTGGAGCAACAATTATCTTCTGGTGATCAAGCTAATGTTGAAAAAATTAAGTTGTTCAATTCAAGGGAGTTGGAGAAAGCCACGGACCACTTTAGCATAGATAGAATTCTTGGTCAGGGAGGCCAAGGTACTGTTTACAAAGGAATGTTGATGGATGGACAAATTGTTGCTGTCAAAAAGTCTAAAATAGTTAACGGAGGCGAAGTTCGACAATTCATTAATGAAATTGTGATTCTTTCACAAATTAACCACAGAAATGTGGTTAAACTATTGGGTTGTTGTTTGGAGACCGAAATTCCCCTCTTGGTCTATGAATTTCTACCGAACGGAACACTTTCTCAGTACATTCATGACCAAGATGAGGAGTTTCCTCTCACATGGGGAACGCGATTGCGAGTGTCTACCGAAGTTGCTGGAGCTCTTTCATATTTACACTCGGCAGCTTCTATTCCTATTTACCACCGGGACATCAAGTCCACGAACATACTCTTGGATGCCAAGTATAGAGCAAAAATTGCAGATTTTGGGACTTCCATATCCATTTCCATTAACCAGACACATCTCACCACACAAGTACATGGAACATTTGGTTATTTGGACCCAGAGTACTTTCAATCAAGCCAATTTACAGAAAAGAGTGATGTTTACAGCTTCGGTGTGGTCCTTGCTGAGCTCTTGACCGGACAAAAACTAGTTATTTCCATGATGAGGTCTCAAGAAAGTAGAAGCCTAGCAACTCATTTTCTTCTTTCCATGGAGCAGAATCGTTTGTTTGATATTCTTGACGCTCAAGTTAAGAAAGATGGTAGCAAAGAAGAAATTATAGCAGTTGCTAACCTTGCGCAAAGATGCTTAAATTTGAGTGGAAGGAAACGTCCTACTATGAAAGAAGTAGCGGCGGAATTGGAGGGAGTTCGATTGGCAGTCAAAGATACTGATCATGTTCAACAAAATTTGGTAGAGGAAGGAGATGTCGAAACTCATGAAATAACCACCGAGGCTTATTGCGATGTTGTTTCTACATCACACGGTCCTTTTACAGATGGTGGTACTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010468 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0016070 GO:0016787 GO:0016788 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043487 GO:0043488 GO:0043489 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045934 GO:0046483 GO:0048255 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1902369 GO:1902373 GO:1903311 GO:1903312

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

404

Amino Acids

45.17

Weight (kDa)

6.2

Isoelectric Point (pI)

28.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	84 - 351	3.3e-47	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	85 - 354	4.5e-47	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006434)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000010047 RLG00000020064 RLG00000028774
rosa_multiflora	Rmu_sc0001306.1_g000022 Rmu_sc0001438.1_g000035
rosa_roxburghii	Rroxscaffold_2G00101450 Rroxscaffold_7G00192090
rosa_rugosa	Rorug05G0119200 Rorug05G0119300 Rorug05G0119400 Rorug05G0119500 Rorug05G0119600 Rorug05G0119600 Rorug05G0119700 Rorug05G0119800 Rorug05G0119900 Rorug05G0120000
rosa_samantha	Rh2AG339800 Rh2AG437400 Rh2CG423700 Rh2DG357000 Rh2DG455400 Rh3CG365400 Rh6BG318500 Rh6CG026900 Rh7AG270000 Rh7CG289200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	999
AccI	GTMKAC	1 cut(s)	557
AccII	CGCG	1 cut(s)	544
AciI	CCGC	4 cut(s)	39, 147, 1052, 1055
AcsI	RAATTY	5 cut(s)	261, 450, 470, 1012, 1108
AfaI	GTAC	6 cut(s)	34, 286, 500, 732, 764, 1207
AfiI	CCNNNNNNNGG	2 cut(s)	517, 864
AgsI	TTSAA	6 cut(s)	136, 197, 214, 219, 770, 1103
AhdI	GACNNNNNGTC	1 cut(s)	628
AhlI	ACTAGT	1 cut(s)	847
AjuI	GAANNNNNNNTTGG	2 cut(s)	629, 661
AloI	GAACNNNNNNTCC	2 cut(s)	345, 377
AluBI	AGCT	5 cut(s)	188, 575, 599, 807, 829
AluI	AGCT	5 cut(s)	188, 575, 599, 807, 829
Alw21I	GWGCWC	2 cut(s)	577, 831
Alw26I	GTCTC	2 cut(s)	437, 873
AoxI	GGCC	1 cut(s)	277
ApeKI	GCWGC	1 cut(s)	596
ApoI	RAATTY	5 cut(s)	261, 450, 470, 1012, 1108
AseI	ATTAAT	1 cut(s)	375
Asp700I	GAANNNNTTC	1 cut(s)	490
AspLEI	GCGC	1 cut(s)	1000
AspS9I	GGNCC	5 cut(s)	85, 241, 754, 817, 1187
AsuC2I	CCSGG	1 cut(s)	620
AsuHPI	GGTGA	2 cut(s)	191, 712
AvaII	GGWCC	5 cut(s)	85, 241, 754, 817, 1187
BanII	GRGCYC	2 cut(s)	577, 831
Bbv12I	GWGCWC	2 cut(s)	577, 831
BbvI	GCAGC	1 cut(s)	608
BccI	CCATC	4 cut(s)	301, 305, 953, 1193
BclI	TGATCA	2 cut(s)	181, 1093
BcnI	CCSGG	1 cut(s)	620
BcoDI	GTCTC	2 cut(s)	437, 873
BcuI	ACTAGT	1 cut(s)	847
BfaI	CTAG	3 cut(s)	62, 848, 887
BisI	GCNGC	3 cut(s)	40, 597, 1053
BlpI	GCTNAGC	1 cut(s)	825
BlsI	GCNGC	3 cut(s)	41, 598, 1054
BmcAI	AGTACT	2 cut(s)	34, 764
Bme1390I	CCNGG	1 cut(s)	620
Bme18I	GGWCC	5 cut(s)	85, 241, 754, 817, 1187
BmeRI	GACNNNNNGTC	1 cut(s)	628
BmgT120I	GGNCC	5 cut(s)	85, 241, 754, 817, 1187
BmiI	GGNNCC	1 cut(s)	756
BmrFI	CCNGG	1 cut(s)	620
BmsI	GCATC	2 cut(s)	640, 995
BpmI	CTGGAG	1 cut(s)	591
Bpu1102I	GCTNAGC	1 cut(s)	825
BpuEI	CTTGAG	2 cut(s)	855, 930
BpuMI	CCSGG	1 cut(s)	620
BsaBI	GATNNNNATC	1 cut(s)	1092
BsaI	GGTCTC	2 cut(s)	437, 873
BsaJI	CCNNGG	4 cut(s)	237, 280, 909, 1152
BsaWI	WCCGGW	1 cut(s)	836
BsaXI	ACNNNNNCTCC	2 cut(s)	345, 375
Bsc4I	CCNNNNNNNGG	2 cut(s)	517, 864
Bse1I	ACTGG	1 cut(s)	40
Bse8I	GATNNNNATC	1 cut(s)	1092
BseDI	CCNNGG	4 cut(s)	237, 280, 909, 1152
BseGI	GGATG	2 cut(s)	316, 655
BseJI	GATNNNNATC	1 cut(s)	1092
BseLI	CCNNNNNNNGG	2 cut(s)	517, 864
BseMII	CTCAG	3 cut(s)	43, 509, 816
BseNI	ACTGG	1 cut(s)	40
BseRI	GAGGAG	1 cut(s)	533
BseXI	GCAGC	1 cut(s)	608
Bsh1236I	CGCG	1 cut(s)	544
BshFI	GGCC	1 cut(s)	279
BsiHKAI	GWGCWC	2 cut(s)	577, 831
BsiSI	CCGG	2 cut(s)	619, 837
BslFI	GGGAC	2 cut(s)	635, 697
BslI	CCNNNNNNNGG	2 cut(s)	517, 864
BsmAI	GTCTC	2 cut(s)	437, 873
BsmFI	GGGAC	2 cut(s)	635, 697
BsnI	GGCC	1 cut(s)	279
Bso31I	GGTCTC	2 cut(s)	437, 873
Bsp1286I	GDGCHC	2 cut(s)	577, 831
Bsp143I	GATC	2 cut(s)	181, 1093
Bsp1720I	GCTNAGC	1 cut(s)	825
Bsp19I	CCATGG	1 cut(s)	909
BspACI	CCGC	4 cut(s)	39, 147, 1052, 1055
BspANI	GGCC	1 cut(s)	279
BspCNI	CTCAG	3 cut(s)	42, 508, 817
BspFNI	CGCG	1 cut(s)	544
BspHI	TCATGA	2 cut(s)	505, 1138
BspLI	GGNNCC	1 cut(s)	756
BspTNI	GGTCTC	2 cut(s)	437, 873
BsrI	ACTGG	1 cut(s)	40
BssECI	CCNNGG	4 cut(s)	237, 280, 909, 1152
BssMI	GATC	2 cut(s)	181, 1093
BssT1I	CCWWGG	2 cut(s)	280, 909
Bst4CI	ACNGT	3 cut(s)	289, 1187, 1210
BstAPI	GCANNNNNTGC	1 cut(s)	671
BstDEI	CTNAG	4 cut(s)	10, 29, 495, 825
BstDSI	CCRYGG	2 cut(s)	237, 909
BstF5I	GGATG	2 cut(s)	316, 655
BstFNI	CGCG	1 cut(s)	544
BstHHI	GCGC	1 cut(s)	1000
BstKTI	GATC	2 cut(s)	184, 1096
BstMAI	GTCTC	2 cut(s)	437, 873
BstMBI	GATC	2 cut(s)	181, 1093
BstMWI	GCNNNNNNNGC	3 cut(s)	71, 671, 995
BstSCI	CCNGG	1 cut(s)	618
BstUI	CGCG	1 cut(s)	544
BstV1I	GCAGC	1 cut(s)	608
BsuRI	GGCC	1 cut(s)	279
BtgI	CCRYGG	2 cut(s)	237, 909
BtgZI	GCGATG	1 cut(s)	1179
BtsCI	GGATG	2 cut(s)	316, 655
CciI	TCATGA	2 cut(s)	505, 1138
CfoI	GCGC	1 cut(s)	1000
Cfr13I	GGNCC	5 cut(s)	85, 241, 754, 817, 1187
CseI	GACGC	1 cut(s)	950
Csp6I	GTAC	6 cut(s)	33, 285, 499, 731, 763, 1206
CviAII	CATG	8 cut(s)	75, 506, 534, 734, 859, 910, 1097, 1139
CviQI	GTAC	6 cut(s)	33, 285, 499, 731, 763, 1206
DdeI	CTNAG	4 cut(s)	10, 29, 495, 825
DpnI	GATC	2 cut(s)	183, 1095
DpnII	GATC	2 cut(s)	181, 1093
DriI	GACNNNNNGTC	1 cut(s)	628
Eam1105I	GACNNNNNGTC	1 cut(s)	628
EciI	GGCGGA	1 cut(s)	1070
Ecl136II	GAGCTC	2 cut(s)	575, 829
Eco130I	CCWWGG	2 cut(s)	280, 909
Eco24I	GRGCYC	2 cut(s)	577, 831
Eco31I	GGTCTC	2 cut(s)	437, 873
Eco47I	GGWCC	5 cut(s)	85, 241, 754, 817, 1187
Eco53kI	GAGCTC	2 cut(s)	575, 829
EcoICRI	GAGCTC	2 cut(s)	575, 829
EcoRI	GAATTC	1 cut(s)	261
EcoT14I	CCWWGG	2 cut(s)	280, 909
EcoT38I	GRGCYC	2 cut(s)	577, 831
ErhI	CCWWGG	2 cut(s)	280, 909
FaeI	CATG	8 cut(s)	78, 509, 537, 737, 862, 913, 1100, 1142
FaqI	GGGAC	2 cut(s)	635, 697
FatI	CATG	8 cut(s)	74, 505, 533, 733, 858, 909, 1096, 1138
FbaI	TGATCA	2 cut(s)	181, 1093
FblI	GTMKAC	1 cut(s)	557
Fnu4HI	GCNGC	3 cut(s)	40, 597, 1053
FokI	GGATG	2 cut(s)	323, 662
FriOI	GRGCYC	2 cut(s)	577, 831
Fsp4HI	GCNGC	3 cut(s)	40, 597, 1053
FspBI	CTAG	3 cut(s)	62, 848, 887
FspI	TGCGCA	1 cut(s)	999
GlaI	GCGC	1 cut(s)	999
GluI	GCNGC	3 cut(s)	40, 597, 1053
GsuI	CTGGAG	1 cut(s)	591
HaeIII	GGCC	1 cut(s)	279
HapII	CCGG	2 cut(s)	619, 837
HgaI	GACGC	1 cut(s)	950
HhaI	GCGC	1 cut(s)	1000
Hin1II	CATG	8 cut(s)	78, 509, 537, 737, 862, 913, 1100, 1142
Hin6I	GCGC	1 cut(s)	998
HinP1I	GCGC	1 cut(s)	998
HincII	GTYRAC	1 cut(s)	349
HindII	GTYRAC	1 cut(s)	349
HinfI	GANTC	2 cut(s)	388, 919
HpaI	GTTAAC	1 cut(s)	349
HpaII	CCGG	2 cut(s)	619, 837
HphI	GGTGA	2 cut(s)	191, 712
Hpy166II	GTNNAC	5 cut(s)	292, 349, 558, 633, 802
Hpy188III	TCNNGA	6 cut(s)	133, 506, 832, 872, 938, 1139
Hpy8I	GTNNAC	5 cut(s)	292, 349, 558, 633, 802
HpyAV	CCTTC	3 cut(s)	115, 1017, 1115
HpyCH4III	ACNGT	3 cut(s)	289, 1187, 1210
HpyCH4IV	ACGT	1 cut(s)	1030
HpyCH4V	TGCA	2 cut(s)	74, 674
HpyF10VI	GCNNNNNNNGC	3 cut(s)	71, 671, 995
HpyF3I	CTNAG	4 cut(s)	10, 29, 495, 825
HpySE526I	ACGT	1 cut(s)	1030
Hsp92II	CATG	8 cut(s)	78, 509, 537, 737, 862, 913, 1100, 1142
HspAI	GCGC	1 cut(s)	998
Ksp22I	TGATCA	2 cut(s)	181, 1093
KspAI	GTTAAC	1 cut(s)	349
Kzo9I	GATC	2 cut(s)	181, 1093
LmnI	GCTCC	3 cut(s)	160, 572, 913
LpnPI	CCDG	9 cut(s)	10, 21, 162, 257, 555, 632, 722, 771, 850
Lsp1109I	GCAGC	1 cut(s)	608
LweI	GCATC	2 cut(s)	640, 995
MaeI	CTAG	3 cut(s)	62, 848, 887
MaeII	ACGT	1 cut(s)	1030
MalI	GATC	2 cut(s)	183, 1095
MboI	GATC	2 cut(s)	181, 1093
MboII	GAAGA	3 cut(s)	165, 893, 983
MhlI	GDGCHC	2 cut(s)	577, 831
MmeI	TCCRAC	1 cut(s)	207
MnlI	CCTC	9 cut(s)	269, 347, 467, 511, 537, 858, 1057, 1111, 1147
MroXI	GAANNNNTTC	1 cut(s)	490
MseI	TTAA	8 cut(s)	204, 348, 375, 402, 420, 705, 951, 1010
MslI	CAYNNNNRTG	1 cut(s)	411
MspI	CCGG	2 cut(s)	619, 837
MspR9I	CCNGG	1 cut(s)	620
MvnI	CGCG	1 cut(s)	544
MwoI	GCNNNNNNNGC	3 cut(s)	71, 671, 995
NciI	CCSGG	1 cut(s)	620
NcoI	CCATGG	1 cut(s)	909
NdeII	GATC	2 cut(s)	181, 1093
NlaIII	CATG	8 cut(s)	78, 509, 537, 737, 862, 913, 1100, 1142
NlaIV	GGNNCC	1 cut(s)	756
NmeAIII	GCCGAG	1 cut(s)	572
NsbI	TGCGCA	1 cut(s)	999
PagI	TCATGA	2 cut(s)	505, 1138
PdmI	GAANNNNTTC	1 cut(s)	490
PfeI	GAWTC	2 cut(s)	388, 919
PkrI	GCNGC	3 cut(s)	41, 598, 1054
PshBI	ATTAAT	1 cut(s)	375
Psp124BI	GAGCTC	2 cut(s)	577, 831
PspN4I	GGNNCC	1 cut(s)	756
PspPI	GGNCC	5 cut(s)	85, 241, 754, 817, 1187
RsaI	GTAC	6 cut(s)	34, 286, 500, 732, 764, 1207
RsaNI	GTAC	6 cut(s)	33, 285, 499, 731, 763, 1206
RseI	CAYNNNNRTG	1 cut(s)	411
SacI	GAGCTC	2 cut(s)	577, 831
SaqAI	TTAA	8 cut(s)	204, 348, 375, 402, 420, 705, 951, 1010
SatI	GCNGC	3 cut(s)	40, 597, 1053
Sau3AI	GATC	2 cut(s)	181, 1093
Sau96I	GGNCC	5 cut(s)	85, 241, 754, 817, 1187
ScaI	AGTACT	2 cut(s)	34, 764
ScrFI	CCNGG	1 cut(s)	620
SduI	GDGCHC	2 cut(s)	577, 831
SetI	ASST	9 cut(s)	190, 286, 577, 601, 809, 831, 869, 996, 1033
SfaNI	GCATC	2 cut(s)	640, 995
SinI	GGWCC	5 cut(s)	85, 241, 754, 817, 1187
SmiMI	CAYNNNNRTG	1 cut(s)	411
SmlI	CTYRAG	2 cut(s)	870, 945
SmoI	CTYRAG	2 cut(s)	870, 945
SpeI	ACTAGT	1 cut(s)	847
SsiI	CCGC	4 cut(s)	39, 147, 1052, 1055
SspI	AATATT	1 cut(s)	57
SspMI	CTAG	3 cut(s)	62, 848, 887
SstI	GAGCTC	2 cut(s)	577, 831
StyD4I	CCNGG	1 cut(s)	618
StyI	CCWWGG	2 cut(s)	280, 909
TaaI	ACNGT	3 cut(s)	289, 1187, 1210
TaiI	ACGT	1 cut(s)	1033
TaqI	TCGA	3 cut(s)	364, 1072, 1131
TaqII	GACCGA	1 cut(s)	461
TatI	WGTACW	4 cut(s)	32, 498, 730, 762
TauI	GCSGC	2 cut(s)	42, 1055
TfiI	GAWTC	2 cut(s)	388, 919
Tru1I	TTAA	8 cut(s)	204, 348, 375, 402, 420, 705, 951, 1010
Tru9I	TTAA	8 cut(s)	204, 348, 375, 402, 420, 705, 951, 1010
TseI	GCWGC	1 cut(s)	596
TspDTI	ATGAA	7 cut(s)	361, 393, 483, 494, 570, 1055, 1155
TspGWI	ACGGA	3 cut(s)	254, 366, 498
VpaK11BI	GGWCC	5 cut(s)	85, 241, 754, 817, 1187
VspI	ATTAAT	1 cut(s)	375
XapI	RAATTY	5 cut(s)	261, 450, 470, 1012, 1108
XmiI	GTMKAC	1 cut(s)	557
XmnI	GAANNNNTTC	1 cut(s)	490
XspI	CTAG	3 cut(s)	62, 848, 887
ZrmI	AGTACT	2 cut(s)	34, 764

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.