Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0006434

Physical Location & Seq

Genomic Coordinates Reverse (-)

60675784 .. 60684989

Gene Structure 9206 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020064

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGAGATTGGGCGGCCGGAAGCTCTCGTTTGAGATTCGGAGCAGAAACAGCTCCCTCGAAGAAGAAGAAGCTGGACTTTTCTTCCTATCCAAGTCAGATCCAATCCGAACGAGCCACGATGCCGCCGACGACCACAAGCCCACTGCTGCGCGAAGAAAACGCAAGAAGAAGAAGAAGAAGAGGACAGTCGCGAACTGCTCCATACCGGAGAGCGACGTGATTGATAGAAATGGATTTGAACCAGTCACTGGTGTCATTTACAGAGGGACTCTAAAAGAGCCTGACAAAGCATCTAGATTTGTTGGACATCTAATGAACGACAATCACCGGCTTCAAAGCCAAAGTGAAAAGAAGGCCAAAAATTGGCAGAAAGCACTGGAGCTCTATGAGGATCTTAAGTCAGCTAAAATTGAGCTGACTGTTTCAACTGTCAATGCTTTGATTACTGCCCTATGTGATGGGGATCAACTACAGAAGGCTATGGAAGTTCTGTCAGAAATGAAGAGTATAGGACTGCGTCCAAAGAGTATAACATACTCCATACTTGTAGTGGCAAGTGAAAAGAAGGATGATCTAGAAGCTGGCCTACTGCTCCTTTCTCAAGCTGAAAAGGATAAAGTTGTTCCAAACCTTGTCATGTACTGTAGATGCATTATAGTCAGGAGTAAGGATGTTGAAGGCCCTGTTTTGTGCCATGTATGTGGGATGAAGGCTCAAAAGCTGAGCTTCATTCTTATCAGTGATGAAATTTATAAGGATAAGCAGGAGCGTAGTAGGGATAAACAGGATGTGATCACTAATATAGTGGCAAAAGGATTAGGACATCAGACAGTTGAACAAGACTTTAGAGCTGAGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0006935 GO:0007275 GO:0008104 GO:0008150 GO:0009605 GO:0009790 GO:0009791 GO:0009793 GO:0009856 GO:0009987 GO:0010154 GO:0010183 GO:0012505 GO:0022414 GO:0031974 GO:0032501 GO:0032502 GO:0032507 GO:0033036 GO:0033365 GO:0034613 GO:0035437 GO:0040011 GO:0042221 GO:0042330 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045185 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048868 GO:0050896 GO:0050918 GO:0051179 GO:0051235 GO:0051641 GO:0051651 GO:0051704 GO:0061458 GO:0065007 GO:0065008 GO:0070013 GO:0070727 GO:0070972 GO:0072595

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF747

Protein Analysis

287

Amino Acids

32.24

Weight (kDa)

9.14

Isoelectric Point (pI)

45.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	109 - 215	1e-05	Pentacotripeptide-repeat region of PRORP
TPR_24	PF23276	125 - 210	4.3e-06	Fungal tetratrico peptide repeats
PPR_3	PF13812	128 - 183	1.6e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	141 - 183	1.1e-09	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006434)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000010047 RLG00000020064 RLG00000028774
rosa_multiflora	Rmu_sc0001306.1_g000022 Rmu_sc0001438.1_g000035
rosa_roxburghii	Rroxscaffold_2G00101450 Rroxscaffold_7G00192090
rosa_rugosa	Rorug05G0119200 Rorug05G0119300 Rorug05G0119400 Rorug05G0119500 Rorug05G0119600 Rorug05G0119600 Rorug05G0119700 Rorug05G0119800 Rorug05G0119900 Rorug05G0120000
rosa_samantha	Rh2AG339800 Rh2AG437400 Rh2CG423700 Rh2DG357000 Rh2DG455400 Rh3CG365400 Rh6BG318500 Rh6CG026900 Rh7AG270000 Rh7CG289200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	753
AccB7I	CCANNNNNTGG	2 cut(s)	248, 363
AccII	CGCG	2 cut(s)	151, 191
AciI	CCGC	2 cut(s)	12, 123
AclWI	GGATC	3 cut(s)	92, 399, 471
AcoI	YGGCCR	1 cut(s)	13
AcsI	RAATTY	1 cut(s)	747
AfaI	GTAC	1 cut(s)	641
AfiI	CCNNNNNNNGG	2 cut(s)	248, 363
AflII	CTTAAG	1 cut(s)	395
AgsI	TTSAA	5 cut(s)	239, 335, 426, 677, 836
AjiI	CACGTC	1 cut(s)	217
Alw21I	GWGCWC	1 cut(s)	384
AlwI	GGATC	3 cut(s)	92, 399, 471
AlwNI	CAGNNNCTG	1 cut(s)	248
AoxI	GGCC	4 cut(s)	13, 354, 583, 679
ApeKI	GCWGC	1 cut(s)	146
ApoI	RAATTY	1 cut(s)	747
AspLEI	GCGC	1 cut(s)	151
AspS9I	GGNCC	1 cut(s)	680
AsuHPI	GGTGA	1 cut(s)	317
BanII	GRGCYC	1 cut(s)	384
BarI	GAAGNNNNNNTAC	2 cut(s)	570, 602
Bbv12I	GWGCWC	1 cut(s)	384
BbvI	GCAGC	1 cut(s)	133
BccI	CCATC	1 cut(s)	452
BclI	TGATCA	1 cut(s)	792
BfaI	CTAG	2 cut(s)	294, 575
BfmI	CTRYAG	2 cut(s)	470, 643
BfrI	CTTAAG	1 cut(s)	395
BisI	GCNGC	3 cut(s)	13, 123, 147
BlpI	GCTNAGC	2 cut(s)	722, 852
BlsI	GCNGC	3 cut(s)	14, 124, 148
BmgBI	CACGTC	1 cut(s)	217
BmgT120I	GGNCC	1 cut(s)	680
BmsI	GCATC	3 cut(s)	109, 299, 638
BpmI	CTGGAG	1 cut(s)	398
Bpu1102I	GCTNAGC	2 cut(s)	722, 852
BpuEI	CTTGAG	1 cut(s)	585
BsaBI	GATNNNNATC	1 cut(s)	462
BsaWI	WCCGGW	1 cut(s)	205
Bsc4I	CCNNNNNNNGG	2 cut(s)	248, 363
Bse118I	RCCGGY	1 cut(s)	327
Bse1I	ACTGG	3 cut(s)	242, 253, 381
Bse8I	GATNNNNATC	1 cut(s)	462
BseGI	GGATG	4 cut(s)	574, 676, 711, 793
BseJI	GATNNNNATC	1 cut(s)	462
BseLI	CCNNNNNNNGG	2 cut(s)	248, 363
BseMII	CTCAG	2 cut(s)	713, 843
BseNI	ACTGG	3 cut(s)	242, 253, 381
BseX3I	CGGCCG	1 cut(s)	13
BseXI	GCAGC	1 cut(s)	133
Bsh1236I	CGCG	2 cut(s)	151, 191
Bsh1285I	CGRYCG	1 cut(s)	16
BshFI	GGCC	4 cut(s)	15, 356, 585, 681
BsiEI	CGRYCG	1 cut(s)	16
BsiHKAI	GWGCWC	1 cut(s)	384
BsiSI	CCGG	3 cut(s)	16, 206, 328
BslFI	GGGAC	1 cut(s)	280
BslI	CCNNNNNNNGG	2 cut(s)	248, 363
BsmFI	GGGAC	1 cut(s)	280
BsnI	GGCC	4 cut(s)	15, 356, 585, 681
Bsp1286I	GDGCHC	1 cut(s)	384
Bsp143I	GATC	5 cut(s)	97, 391, 463, 571, 792
Bsp1720I	GCTNAGC	2 cut(s)	722, 852
Bsp68I	TCGCGA	1 cut(s)	191
BspACI	CCGC	2 cut(s)	12, 123
BspANI	GGCC	4 cut(s)	15, 356, 585, 681
BspCNI	CTCAG	2 cut(s)	714, 844
BspFNI	CGCG	2 cut(s)	151, 191
BspPI	GGATC	3 cut(s)	92, 399, 471
BspTI	CTTAAG	1 cut(s)	395
BsrFI	RCCGGY	1 cut(s)	327
BsrI	ACTGG	3 cut(s)	242, 253, 381
BssAI	RCCGGY	1 cut(s)	327
BssMI	GATC	5 cut(s)	97, 391, 463, 571, 792
Bst4CI	ACNGT	5 cut(s)	187, 421, 430, 644, 832
Bst6I	CTCTTC	2 cut(s)	173, 497
BstAFI	CTTAAG	1 cut(s)	395
BstC8I	GCNNGC	1 cut(s)	583
BstDEI	CTNAG	2 cut(s)	722, 852
BstF5I	GGATG	4 cut(s)	574, 676, 711, 793
BstFNI	CGCG	2 cut(s)	151, 191
BstHHI	GCGC	1 cut(s)	151
BstKTI	GATC	5 cut(s)	100, 394, 466, 574, 795
BstMBI	GATC	5 cut(s)	97, 391, 463, 571, 792
BstMCI	CGRYCG	1 cut(s)	16
BstMWI	GCNNNNNNNGC	1 cut(s)	48
BstSFI	CTRYAG	2 cut(s)	470, 643
BstUI	CGCG	2 cut(s)	151, 191
BstV1I	GCAGC	1 cut(s)	133
BstX2I	RGATCY	2 cut(s)	97, 391
BstXI	CCANNNNNNTGG	1 cut(s)	701
BstYI	RGATCY	2 cut(s)	97, 391
BstZI	CGGCCG	1 cut(s)	13
BsuRI	GGCC	4 cut(s)	15, 356, 585, 681
BtrI	CACGTC	1 cut(s)	217
BtsCI	GGATG	4 cut(s)	574, 676, 711, 793
BtsI	GCAGTG	1 cut(s)	141
BtsIMutI	CAGTG	4 cut(s)	141, 246, 374, 745
BtuMI	TCGCGA	1 cut(s)	191
Cac8I	GCNNGC	1 cut(s)	583
CaiI	CAGNNNCTG	1 cut(s)	248
CfoI	GCGC	1 cut(s)	151
Cfr10I	RCCGGY	1 cut(s)	327
Cfr13I	GGNCC	1 cut(s)	680
CseI	GACGC	1 cut(s)	506
Csp6I	GTAC	1 cut(s)	640
CviAII	CATG	2 cut(s)	637, 695
CviQI	GTAC	1 cut(s)	640
DdeI	CTNAG	2 cut(s)	722, 852
DpnI	GATC	5 cut(s)	99, 393, 465, 573, 794
DpnII	GATC	5 cut(s)	97, 391, 463, 571, 792
EaeI	YGGCCR	1 cut(s)	13
EagI	CGGCCG	1 cut(s)	13
Eam1104I	CTCTTC	2 cut(s)	173, 497
EarI	CTCTTC	2 cut(s)	173, 497
Ecl136II	GAGCTC	1 cut(s)	382
EclXI	CGGCCG	1 cut(s)	13
Eco24I	GRGCYC	1 cut(s)	384
Eco52I	CGGCCG	1 cut(s)	13
Eco53kI	GAGCTC	1 cut(s)	382
EcoICRI	GAGCTC	1 cut(s)	382
EcoO109I	RGGNCCY	1 cut(s)	680
EcoT22I	ATGCAT	1 cut(s)	653
EcoT38I	GRGCYC	1 cut(s)	384
FaeI	CATG	2 cut(s)	640, 698
FalI	AAGNNNNNCTT	4 cut(s)	60, 92, 710, 742
FaqI	GGGAC	1 cut(s)	280
FatI	CATG	2 cut(s)	636, 694
FbaI	TGATCA	1 cut(s)	792
Fnu4HI	GCNGC	3 cut(s)	13, 123, 147
FokI	GGATG	4 cut(s)	581, 683, 718, 800
FriOI	GRGCYC	1 cut(s)	384
Fsp4HI	GCNGC	3 cut(s)	13, 123, 147
FspBI	CTAG	2 cut(s)	294, 575
GlaI	GCGC	1 cut(s)	150
GluI	GCNGC	3 cut(s)	13, 123, 147
GsuI	CTGGAG	1 cut(s)	398
HaeIII	GGCC	4 cut(s)	15, 356, 585, 681
HapII	CCGG	3 cut(s)	16, 206, 328
HgaI	GACGC	1 cut(s)	506
HhaI	GCGC	1 cut(s)	151
Hin1II	CATG	2 cut(s)	640, 698
Hin6I	GCGC	1 cut(s)	149
HinP1I	GCGC	1 cut(s)	149
HinfI	GANTC	2 cut(s)	34, 268
HpaII	CCGG	3 cut(s)	16, 206, 328
HphI	GGTGA	1 cut(s)	317
Hpy188I	TCNGA	5 cut(s)	39, 97, 107, 496, 828
Hpy188III	TCNNGA	4 cut(s)	190, 294, 575, 661
Hpy99I	CGWCG	2 cut(s)	131, 218
HpyAV	CCTTC	5 cut(s)	346, 469, 559, 671, 703
HpyCH4III	ACNGT	5 cut(s)	187, 421, 430, 644, 832
HpyCH4IV	ACGT	1 cut(s)	216
HpyCH4V	TGCA	1 cut(s)	651
HpyF10VI	GCNNNNNNNGC	1 cut(s)	48
HpyF3I	CTNAG	2 cut(s)	722, 852
HpySE526I	ACGT	1 cut(s)	216
Hsp92II	CATG	2 cut(s)	640, 698
HspAI	GCGC	1 cut(s)	149
Ksp22I	TGATCA	1 cut(s)	792
Kzo9I	GATC	5 cut(s)	97, 391, 463, 571, 792
LmnI	GCTCC	6 cut(s)	39, 56, 203, 379, 597, 766
Lsp1109I	GCAGC	1 cut(s)	133
LweI	GCATC	3 cut(s)	109, 299, 638
MaeI	CTAG	2 cut(s)	294, 575
MaeII	ACGT	1 cut(s)	216
MaeIII	GTNAC	1 cut(s)	244
MalI	GATC	5 cut(s)	99, 393, 465, 573, 794
MboI	GATC	5 cut(s)	97, 391, 463, 571, 792
MflI	RGATCY	2 cut(s)	97, 391
MhlI	GDGCHC	1 cut(s)	384
MluCI	AATT	3 cut(s)	361, 408, 747
MlyI	GAGTC	1 cut(s)	262
MmeI	TCCRAC	1 cut(s)	283
MnlI	CCTC	4 cut(s)	65, 174, 257, 382
Mph1103I	ATGCAT	1 cut(s)	653
MseI	TTAA	1 cut(s)	396
MslI	CAYNNNNRTG	1 cut(s)	699
MspCI	CTTAAG	1 cut(s)	395
MspI	CCGG	3 cut(s)	16, 206, 328
MvnI	CGCG	2 cut(s)	151, 191
MwoI	GCNNNNNNNGC	1 cut(s)	48
NdeII	GATC	5 cut(s)	97, 391, 463, 571, 792
NlaIII	CATG	2 cut(s)	640, 698
NmuCI	GTSAC	1 cut(s)	244
NruI	TCGCGA	1 cut(s)	191
NsiI	ATGCAT	1 cut(s)	653
PcsI	WCGNNNNNNNCGW	1 cut(s)	123
PfeI	GAWTC	1 cut(s)	34
PflFI	GACNNNGTC	1 cut(s)	516
PflMI	CCANNNNNTGG	2 cut(s)	248, 363
PkrI	GCNGC	3 cut(s)	14, 124, 148
PleI	GAGTC	1 cut(s)	262
PpsI	GAGTC	1 cut(s)	262
PsiI	TTATAA	1 cut(s)	753
Psp124BI	GAGCTC	1 cut(s)	384
PspPI	GGNCC	1 cut(s)	680
PstNI	CAGNNNCTG	1 cut(s)	248
PsuI	RGATCY	2 cut(s)	97, 391
PsyI	GACNNNGTC	1 cut(s)	516
RruI	TCGCGA	1 cut(s)	191
RsaI	GTAC	1 cut(s)	641
RsaNI	GTAC	1 cut(s)	640
RseI	CAYNNNNRTG	1 cut(s)	699
SacI	GAGCTC	1 cut(s)	384
SaqAI	TTAA	1 cut(s)	396
SatI	GCNGC	3 cut(s)	13, 123, 147
Sau3AI	GATC	5 cut(s)	97, 391, 463, 571, 792
Sau96I	GGNCC	1 cut(s)	680
SchI	GAGTC	1 cut(s)	262
SduI	GDGCHC	1 cut(s)	384
SfaNI	GCATC	3 cut(s)	109, 299, 638
SfcI	CTRYAG	2 cut(s)	470, 643
SmiMI	CAYNNNNRTG	1 cut(s)	699
SmlI	CTYRAG	2 cut(s)	395, 600
SmoI	CTYRAG	2 cut(s)	395, 600
Sse9I	AATT	3 cut(s)	361, 408, 747
SsiI	CCGC	2 cut(s)	12, 123
SspMI	CTAG	2 cut(s)	294, 575
SstI	GAGCTC	1 cut(s)	384
TaaI	ACNGT	5 cut(s)	187, 421, 430, 644, 832
TaiI	ACGT	1 cut(s)	219
TaqI	TCGA	1 cut(s)	57
TasI	AATT	3 cut(s)	361, 408, 747
TatI	WGTACW	1 cut(s)	639
TauI	GCSGC	2 cut(s)	15, 125
TfiI	GAWTC	1 cut(s)	34
Tru1I	TTAA	1 cut(s)	396
Tru9I	TTAA	1 cut(s)	396
TscAI	CASTG	4 cut(s)	148, 253, 381, 745
TseFI	GTSAC	1 cut(s)	244
TseI	GCWGC	1 cut(s)	146
Tsp45I	GTSAC	1 cut(s)	244
TspDTI	ATGAA	5 cut(s)	329, 515, 718, 722, 759
TspRI	CASTG	4 cut(s)	148, 253, 381, 745
Tth111I	GACNNNGTC	1 cut(s)	516
Van91I	CCANNNNNTGG	2 cut(s)	248, 363
Vha464I	CTTAAG	1 cut(s)	395
XapI	RAATTY	1 cut(s)	747
XbaI	TCTAGA	2 cut(s)	293, 574
XcmI	CCANNNNNNNNNTGG	1 cut(s)	547
XspI	CTAG	2 cut(s)	294, 575
Zsp2I	ATGCAT	1 cut(s)	653

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.