Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0006434

Physical Location & Seq

Genomic Coordinates Forward (+)

10517726 .. 10519056

Gene Structure 1331 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0119200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGGCGTTGCGACTCTCATTGGTGGCAGTCCTACTCCTGTTATCGGCGGCTAGTACTACTACGACAACAGCAGTTGCTGCTCAAGCCCTGCCAGCTGACTGCTCAGACAAGTGCGGCAATCTCACAATTCCATATCCATTTGGCATGAAGAAGCAGGATTGTTACCTGCGAGAAGAATTCTTTATCAATTGTAGCCATACCACCCAATCACCAGTGGCATCTTTGATGGAAGGGAGTCTCATTGTTACTAACATTTCCCTTGATGACGGTGAGTTGGGAATATTGGGCTCCGTAGCTGCAGATTGCTGTAACGCCCAGGGCAATTTGACGTGCAGCTTCCCTTCTTCGCTCAGCCTGCCTCTTCCTTACACGATCTCCAGTTCCAAAAACAAGTTCTATGCCGTTGGTTGTGACGGTCGTGCAATTATACAAGGTTTCCGTGGAGAAGAAGAGTTGATTACCGGGTGCATATCCTTATGCAACAGCCTTGACAACGTCGATAAGAACTCTTGCTCCGGCGTTGGGTGTTGCCAGACTAACATCCCCTGTGGACTAAAGAATACGACGGTCAAGGTGGATAGCTACAAAAATAATTTCAGAGTAAGGGATTTTAACCCCTGCAGCTACGCCTTTATTGTAGAACAAGGCCAGTTTAATTTCTCCCCTGCGAGTTTTAAAGAGCTGAAAAATACTGAAAAGCTTCCAATGGTTCTTAATTGGGCAATAGGGAAGGACACAAATCCCTGTAATGAAGCTCAAAAGAGGAAAGATTTCATATGCACGGCTAATAGCAGGTGCGTCAACCCTAACAGGGGGTCAGTAGGTTACTTGTGCCGGTGCTTGCCTGGTTATGAAGGAAACCCTTACCACCCAGATGGTTGCCAAGATATTGATGAGTGCAGGGCTTCAAACCCCTGCCAGAACGGACGGTGCTTAAATACTCCACCTCCAGGAAAATACTTTTGTTCATGTCACAAAGGATACAAAACCGACGGCATGAACGACAAGATTTGCATAAAAAGCGATTCCAAACGACACTCAAAGATCGTTCTCCTGCATATTGTTTCATTCGGTATGTATATACTTCCATATTATCTGCCTAATATTCTAACTTATAATTGTATTAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010468 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0016070 GO:0016787 GO:0016788 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043487 GO:0043488 GO:0043489 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045934 GO:0046483 GO:0048255 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1902369 GO:1902373 GO:1903311 GO:1903312

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

376

Amino Acids

41.07

Weight (kDa)

8.03

Isoelectric Point (pI)

32.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GUB_WAK_bind	PF13947	34 - 92	2.1e-11	Wall-associated receptor kinase galacturonan-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006434)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000010047 RLG00000020064 RLG00000028774
rosa_multiflora	Rmu_sc0001306.1_g000022 Rmu_sc0001438.1_g000035
rosa_roxburghii	Rroxscaffold_2G00101450 Rroxscaffold_7G00192090
rosa_rugosa	Rorug05G0119200 Rorug05G0119300 Rorug05G0119400 Rorug05G0119500 Rorug05G0119600 Rorug05G0119600 Rorug05G0119700 Rorug05G0119800 Rorug05G0119900 Rorug05G0120000
rosa_samantha	Rh2AG339800 Rh2AG437400 Rh2CG423700 Rh2DG357000 Rh2DG455400 Rh3CG365400 Rh6BG318500 Rh6CG026900 Rh7AG270000 Rh7CG289200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1116
AarI	CACCTGC	1 cut(s)	783
Acc36I	ACCTGC	2 cut(s)	174, 783
AciI	CCGC	2 cut(s)	47, 114
AcsI	RAATTY	1 cut(s)	176
AfaI	GTAC	1 cut(s)	55
AfiI	CCNNNNNNNGG	5 cut(s)	43, 522, 811, 812, 950
AgsI	TTSAA	1 cut(s)	909
AjiI	CACGTC	1 cut(s)	330
AjnI	CCWGG	3 cut(s)	315, 844, 949
AjuI	GAANNNNNNNTTGG	2 cut(s)	377, 409
AloI	GAACNNNNNNTCC	2 cut(s)	497, 529
AluBI	AGCT	8 cut(s)	95, 296, 336, 582, 624, 682, 700, 755
AluI	AGCT	8 cut(s)	95, 296, 336, 582, 624, 682, 700, 755
Alw26I	GTCTC	1 cut(s)	242
AlwNI	CAGNNNCTG	1 cut(s)	77
AoxI	GGCC	1 cut(s)	646
ApeKI	GCWGC	4 cut(s)	77, 296, 333, 621
ApoI	RAATTY	1 cut(s)	176
Asp700I	GAANNNNTTC	2 cut(s)	699, 770
AsuC2I	CCSGG	1 cut(s)	463
AsuHPI	GGTGA	2 cut(s)	201, 281
BanII	GRGCYC	1 cut(s)	290
BbvI	GCAGC	4 cut(s)	64, 283, 345, 633
BccI	CCATC	2 cut(s)	220, 869
BceAI	ACGGC	3 cut(s)	386, 798, 1009
BciT130I	CCWGG	3 cut(s)	317, 846, 951
BciVI	GTATCC	1 cut(s)	974
BcnI	CCSGG	1 cut(s)	463
BcoDI	GTCTC	1 cut(s)	242
BfaI	CTAG	1 cut(s)	51
BfmI	CTRYAG	2 cut(s)	297, 619
BfuAI	ACCTGC	2 cut(s)	174, 783
BfuI	GTATCC	1 cut(s)	974
BisI	GCNGC	6 cut(s)	48, 78, 115, 297, 334, 622
BlpI	GCTNAGC	1 cut(s)	350
BlsI	GCNGC	6 cut(s)	49, 79, 116, 298, 335, 623
BmcAI	AGTACT	1 cut(s)	55
Bme1390I	CCNGG	4 cut(s)	317, 463, 846, 951
BmgBI	CACGTC	1 cut(s)	330
BmiI	GGNNCC	1 cut(s)	289
BmrFI	CCNGG	4 cut(s)	317, 463, 846, 951
BmsI	GCATC	1 cut(s)	227
BpmI	CTGGAG	2 cut(s)	361, 933
Bpu1102I	GCTNAGC	1 cut(s)	350
BpuEI	CTTGAG	1 cut(s)	66
BpuMI	CCSGG	1 cut(s)	463
BsaJI	CCNNGG	3 cut(s)	315, 316, 439
BsaXI	ACNNNNNCTCC	6 cut(s)	359, 389, 497, 527, 931, 961
Bsc4I	CCNNNNNNNGG	5 cut(s)	43, 522, 811, 812, 950
Bse118I	RCCGGY	1 cut(s)	834
Bse1I	ACTGG	3 cut(s)	212, 378, 649
BseBI	CCWGG	3 cut(s)	317, 846, 951
BseDI	CCNNGG	3 cut(s)	315, 316, 439
BseGI	GGATG	1 cut(s)	540
BseLI	CCNNNNNNNGG	5 cut(s)	43, 522, 811, 812, 950
BseMII	CTCAG	2 cut(s)	117, 364
BseNI	ACTGG	3 cut(s)	212, 378, 649
BseXI	GCAGC	4 cut(s)	64, 283, 345, 633
BsgI	GTGCAG	2 cut(s)	352, 919
Bsh1285I	CGRYCG	1 cut(s)	418
BshFI	GGCC	1 cut(s)	648
BsiEI	CGRYCG	1 cut(s)	418
BsiSI	CCGG	3 cut(s)	462, 516, 835
BslI	CCNNNNNNNGG	5 cut(s)	43, 522, 811, 812, 950
BsmAI	GTCTC	1 cut(s)	242
BsnI	GGCC	1 cut(s)	648
Bsp1286I	GDGCHC	1 cut(s)	290
Bsp143I	GATC	2 cut(s)	372, 1044
Bsp1720I	GCTNAGC	1 cut(s)	350
BspACI	CCGC	2 cut(s)	47, 114
BspANI	GGCC	1 cut(s)	648
BspCNI	CTCAG	2 cut(s)	116, 363
BspLI	GGNNCC	1 cut(s)	289
BspMAI	CTGCAG	2 cut(s)	301, 623
BspMI	ACCTGC	2 cut(s)	174, 783
BsrFI	RCCGGY	1 cut(s)	834
BsrI	ACTGG	3 cut(s)	212, 378, 649
BssAI	RCCGGY	1 cut(s)	834
BssECI	CCNNGG	3 cut(s)	315, 316, 439
BssMI	GATC	2 cut(s)	372, 1044
Bst2UI	CCWGG	3 cut(s)	317, 846, 951
Bst4CI	ACNGT	4 cut(s)	269, 416, 568, 930
Bst6I	CTCTTC	2 cut(s)	366, 444
BstAPI	GCANNNNNTGC	1 cut(s)	77
BstC8I	GCNNGC	3 cut(s)	93, 356, 842
BstDEI	CTNAG	2 cut(s)	103, 350
BstDSI	CCRYGG	1 cut(s)	439
BstF5I	GGATG	1 cut(s)	540
BstKTI	GATC	2 cut(s)	375, 1047
BstMAI	GTCTC	1 cut(s)	242
BstMBI	GATC	2 cut(s)	372, 1044
BstMCI	CGRYCG	1 cut(s)	418
BstMWI	GCNNNNNNNGC	5 cut(s)	77, 83, 92, 355, 1020
BstNI	CCWGG	3 cut(s)	317, 846, 951
BstSCI	CCNGG	4 cut(s)	315, 461, 844, 949
BstSFI	CTRYAG	2 cut(s)	297, 619
BstV1I	GCAGC	4 cut(s)	64, 283, 345, 633
BstXI	CCANNNNNNTGG	1 cut(s)	875
BsuI	GTATCC	1 cut(s)	974
BsuRI	GGCC	1 cut(s)	648
BtgI	CCRYGG	1 cut(s)	439
BtrI	CACGTC	1 cut(s)	330
BtsCI	GGATG	1 cut(s)	540
BtsIMutI	CAGTG	1 cut(s)	219
BveI	ACCTGC	2 cut(s)	174, 783
Cac8I	GCNNGC	3 cut(s)	93, 356, 842
CaiI	CAGNNNCTG	1 cut(s)	77
Cfr10I	RCCGGY	1 cut(s)	834
CseI	GACGC	1 cut(s)	787
Csp6I	GTAC	1 cut(s)	54
CviAII	CATG	3 cut(s)	145, 969, 997
CviQI	GTAC	1 cut(s)	54
DdeI	CTNAG	2 cut(s)	103, 350
DpnI	GATC	2 cut(s)	374, 1046
DpnII	GATC	2 cut(s)	372, 1044
DraI	TTTAAA	1 cut(s)	676
Eam1104I	CTCTTC	2 cut(s)	366, 444
EarI	CTCTTC	2 cut(s)	366, 444
Eco24I	GRGCYC	1 cut(s)	290
EcoRI	GAATTC	1 cut(s)	176
EcoRII	CCWGG	3 cut(s)	315, 844, 949
EcoT38I	GRGCYC	1 cut(s)	290
FaeI	CATG	3 cut(s)	148, 972, 1000
FatI	CATG	3 cut(s)	144, 968, 996
FauNDI	CATATG	1 cut(s)	776
Fnu4HI	GCNGC	6 cut(s)	48, 78, 115, 297, 334, 622
FokI	GGATG	1 cut(s)	527
FriOI	GRGCYC	1 cut(s)	290
Fsp4HI	GCNGC	6 cut(s)	48, 78, 115, 297, 334, 622
FspBI	CTAG	1 cut(s)	51
GluI	GCNGC	6 cut(s)	48, 78, 115, 297, 334, 622
GsuI	CTGGAG	2 cut(s)	361, 933
HaeIII	GGCC	1 cut(s)	648
HapII	CCGG	3 cut(s)	462, 516, 835
HgaI	GACGC	1 cut(s)	787
Hin1II	CATG	3 cut(s)	148, 972, 1000
HincII	GTYRAC	1 cut(s)	802
HindII	GTYRAC	1 cut(s)	802
HindIII	AAGCTT	1 cut(s)	698
HinfI	GANTC	3 cut(s)	12, 235, 1025
HpaII	CCGG	3 cut(s)	462, 516, 835
HphI	GGTGA	2 cut(s)	201, 281
Hpy166II	GTNNAC	2 cut(s)	551, 802
Hpy188I	TCNGA	2 cut(s)	106, 599
Hpy8I	GTNNAC	2 cut(s)	551, 802
Hpy99I	CGWCG	3 cut(s)	500, 568, 995
HpyAV	CCTTC	4 cut(s)	224, 351, 724, 848
HpyCH4III	ACNGT	4 cut(s)	269, 416, 568, 930
HpyCH4IV	ACGT	2 cut(s)	329, 495
HpyF10VI	GCNNNNNNNGC	5 cut(s)	77, 83, 92, 355, 1020
HpyF3I	CTNAG	2 cut(s)	103, 350
HpySE526I	ACGT	2 cut(s)	329, 495
Hsp92II	CATG	3 cut(s)	148, 972, 1000
Kzo9I	GATC	2 cut(s)	372, 1044
LmnI	GCTCC	2 cut(s)	293, 518
Lsp1109I	GCAGC	4 cut(s)	64, 283, 345, 633
LweI	GCATC	1 cut(s)	227
MaeI	CTAG	1 cut(s)	51
MaeII	ACGT	2 cut(s)	329, 495
MaeIII	GTNAC	6 cut(s)	161, 244, 308, 410, 824, 971
MalI	GATC	2 cut(s)	374, 1046
MboI	GATC	2 cut(s)	372, 1044
MboII	GAAGA	6 cut(s)	160, 185, 336, 353, 458, 461
MfeI	CAATTG	1 cut(s)	187
MhlI	GDGCHC	1 cut(s)	290
MluCI	AATT	9 cut(s)	126, 176, 187, 322, 423, 592, 655, 715, 1117
MlyI	GAGTC	2 cut(s)	6, 244
MnlI	CCTC	3 cut(s)	369, 756, 957
MroXI	GAANNNNTTC	2 cut(s)	699, 770
MseI	TTAA	6 cut(s)	612, 654, 675, 714, 935, 1125
MslI	CAYNNNNRTG	1 cut(s)	873
MspA1I	CMGCKG	1 cut(s)	95
MspI	CCGG	3 cut(s)	462, 516, 835
MspR9I	CCNGG	4 cut(s)	317, 463, 846, 951
MunI	CAATTG	1 cut(s)	187
MvaI	CCWGG	3 cut(s)	317, 846, 951
MwoI	GCNNNNNNNGC	5 cut(s)	77, 83, 92, 355, 1020
NciI	CCSGG	1 cut(s)	463
NdeI	CATATG	1 cut(s)	776
NdeII	GATC	2 cut(s)	372, 1044
NlaIII	CATG	3 cut(s)	148, 972, 1000
NlaIV	GGNNCC	1 cut(s)	289
NmuCI	GTSAC	2 cut(s)	410, 971
PaqCI	CACCTGC	1 cut(s)	783
PasI	CCCWGGG	1 cut(s)	316
PcsI	WCGNNNNNNNCGW	1 cut(s)	999
PdmI	GAANNNNTTC	2 cut(s)	699, 770
PfeI	GAWTC	1 cut(s)	1025
PflFI	GACNNNGTC	1 cut(s)	494
PfoI	TCCNGGA	1 cut(s)	949
PkrI	GCNGC	6 cut(s)	49, 79, 116, 298, 335, 623
PleI	GAGTC	2 cut(s)	6, 243
PpsI	GAGTC	2 cut(s)	6, 243
PsiI	TTATAA	1 cut(s)	1116
Psp6I	CCWGG	3 cut(s)	315, 844, 949
PspGI	CCWGG	3 cut(s)	315, 844, 949
PspN4I	GGNNCC	1 cut(s)	289
PstI	CTGCAG	2 cut(s)	301, 623
PstNI	CAGNNNCTG	1 cut(s)	77
PsyI	GACNNNGTC	1 cut(s)	494
PvuII	CAGCTG	1 cut(s)	95
RsaI	GTAC	1 cut(s)	55
RsaNI	GTAC	1 cut(s)	54
RseI	CAYNNNNRTG	1 cut(s)	873
SaqAI	TTAA	6 cut(s)	612, 654, 675, 714, 935, 1125
SatI	GCNGC	6 cut(s)	48, 78, 115, 297, 334, 622
Sau3AI	GATC	2 cut(s)	372, 1044
ScaI	AGTACT	1 cut(s)	55
SchI	GAGTC	2 cut(s)	6, 244
ScrFI	CCNGG	4 cut(s)	317, 463, 846, 951
SduI	GDGCHC	1 cut(s)	290
SfaNI	GCATC	1 cut(s)	227
SfcI	CTRYAG	2 cut(s)	297, 619
SmiMI	CAYNNNNRTG	1 cut(s)	873
SmlI	CTYRAG	1 cut(s)	81
SmoI	CTYRAG	1 cut(s)	81
Sse9I	AATT	9 cut(s)	126, 176, 187, 322, 423, 592, 655, 715, 1117
SsiI	CCGC	2 cut(s)	47, 114
SspI	AATATT	2 cut(s)	282, 1105
SspMI	CTAG	1 cut(s)	51
StyD4I	CCNGG	4 cut(s)	315, 461, 844, 949
TaaI	ACNGT	4 cut(s)	269, 416, 568, 930
TaiI	ACGT	2 cut(s)	332, 498
TaqI	TCGA	1 cut(s)	498
TasI	AATT	9 cut(s)	126, 176, 187, 322, 423, 592, 655, 715, 1117
TatI	WGTACW	1 cut(s)	53
TauI	GCSGC	2 cut(s)	50, 117
TfiI	GAWTC	1 cut(s)	1025
Tru1I	TTAA	6 cut(s)	612, 654, 675, 714, 935, 1125
Tru9I	TTAA	6 cut(s)	612, 654, 675, 714, 935, 1125
TscAI	CASTG	1 cut(s)	219
TseFI	GTSAC	2 cut(s)	410, 971
TseI	GCWGC	4 cut(s)	77, 296, 333, 621
Tsp45I	GTSAC	2 cut(s)	410, 971
TspDTI	ATGAA	7 cut(s)	161, 763, 765, 867, 957, 1013, 1056
TspGWI	ACGGA	3 cut(s)	280, 428, 939
TspRI	CASTG	1 cut(s)	219
Tth111I	GACNNNGTC	1 cut(s)	494
XapI	RAATTY	1 cut(s)	176
XmnI	GAANNNNTTC	2 cut(s)	699, 770
XspI	CTAG	1 cut(s)	51
ZrmI	AGTACT	1 cut(s)	55

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.