Rh2DG455400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0006434
Physical Location & Seq
Reverse (-)
65844968 .. 65860336
15369 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG455400.1

Sequence Viewer

Length: 537 bp
ATGAGGAGGGTGGCCACCCTGACAGACCCTGGGAAGCGCTCGCTGTTAGAAAGGTGTGCGACTTTTGCATGTGGCGTGCACATTGGACTGAAGAATGCCCATATCAGGTACCAGAGGGCGCTCGTGGTAATTGAGTACAAACCAAATAAGCACAAACCAGTGGCTCCGAACCAGATCGGGACTACACCTGATGCAAGTCATGTCCCAAACGGCCACAATGACAGGCAGCTCGGGGGAGACAGCCACGTCAAGGACCAGGACTGGTTGAATTTGAAAGGCACAACAAACATCATCAATATCACAGATGAAGAGGTATTAGTCGGACTTGACTCAAGGTCTACATTGTATGACAAACTAAGAAAGACAATCCGTGTGTTTTCAAATGAAAGGAGAAAGTTCGATGTGGTAGCTCCAACAGTTAGAATGACACGTGTTGGTAATCTAAAGGAGTATCGTAACACCTGGTTTCATGTGAAGGTAGTAATTTCAAAAGATATATTAGCAGGACCAAATTATATAATGCGGTGTCTAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

178

Amino Acids

20.27

Weight (kDa)

9.97

Isoelectric Point (pI)

46.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 245
Acc65I GGTACC 1 cut(s) 108
AccB1I GGYRCC 1 cut(s) 108
AccI GTMKAC 1 cut(s) 338
AciI CCGC 1 cut(s) 523
AcoI YGGCCR 2 cut(s) 12, 211
AcsI RAATTY 1 cut(s) 268
AcuI CTGAAG 1 cut(s) 110
AcvI CACGTG 1 cut(s) 431
AfaI GTAC 2 cut(s) 110, 137
AfeI AGCGCT 1 cut(s) 38
AfiI CCNNNNNNNGG 2 cut(s) 105, 250
AflIII ACRYGT 2 cut(s) 428, 430
AgsI TTSAA 4 cut(s) 268, 274, 381, 489
AhdI GACNNNNNGTC 1 cut(s) 334
AjiI CACGTC 1 cut(s) 247
AjnI CCWGG 3 cut(s) 28, 255, 461
AluBI AGCT 2 cut(s) 229, 410
AluI AGCT 2 cut(s) 229, 410
Alw21I GWGCWC 1 cut(s) 81
Alw26I GTCTC 1 cut(s) 231
Alw44I GTGCAC 1 cut(s) 77
AlwNI CAGNNNCTG 1 cut(s) 29
Ama87I CYCGRG 1 cut(s) 230
Aor51HI AGCGCT 1 cut(s) 38
AoxI GGCC 2 cut(s) 12, 211
ApaLI GTGCAC 1 cut(s) 77
ApeKI GCWGC 1 cut(s) 226
ApoI RAATTY 1 cut(s) 268
Asp718I GGTACC 1 cut(s) 108
AspLEI GCGC 2 cut(s) 39, 121
AspS9I GGNCC 2 cut(s) 253, 506
AvaI CYCGRG 1 cut(s) 230
AvaII GGWCC 2 cut(s) 253, 506
BaeGI GKGCMC 1 cut(s) 81
BalI TGGCCA 1 cut(s) 14
BanI GGYRCC 1 cut(s) 108
BauI CACGAG 1 cut(s) 122
BbrPI CACGTG 1 cut(s) 431
Bbv12I GWGCWC 1 cut(s) 81
BbvI GCAGC 1 cut(s) 238
BceAI ACGGC 1 cut(s) 226
BciT130I CCWGG 3 cut(s) 30, 257, 463
BcoDI GTCTC 1 cut(s) 231
BfoI RGCGCY 2 cut(s) 40, 122
BisI GCNGC 1 cut(s) 227
BlsI GCNGC 1 cut(s) 228
Bme1390I CCNGG 3 cut(s) 30, 257, 463
Bme18I GGWCC 2 cut(s) 253, 506
BmeRI GACNNNNNGTC 1 cut(s) 334
BmeT110I CYCGRG 1 cut(s) 230
BmgBI CACGTC 1 cut(s) 247
BmgT120I GGNCC 2 cut(s) 253, 506
BmiI GGNNCC 2 cut(s) 110, 165
BmrFI CCNGG 3 cut(s) 30, 257, 463
BmsI GCATC 1 cut(s) 181
BpuEI CTTGAG 1 cut(s) 316
BsaAI YACGTR 1 cut(s) 431
BsaJI CCNNGG 2 cut(s) 28, 29
Bsc4I CCNNNNNNNGG 2 cut(s) 105, 250
Bse1I ACTGG 2 cut(s) 158, 266
BseBI CCWGG 3 cut(s) 30, 257, 463
BseDI CCNNGG 2 cut(s) 28, 29
BseLI CCNNNNNNNGG 2 cut(s) 105, 250
BseNI ACTGG 2 cut(s) 158, 266
BseRI GAGGAG 1 cut(s) 19
BseSI GKGCMC 1 cut(s) 81
BseXI GCAGC 1 cut(s) 238
BshFI GGCC 2 cut(s) 14, 213
BshNI GGYRCC 1 cut(s) 108
BsiHKAI GWGCWC 1 cut(s) 81
BsiHKCI CYCGRG 1 cut(s) 230
BslFI GGGAC 2 cut(s) 188, 193
BslI CCNNNNNNNGG 2 cut(s) 105, 250
BsmAI GTCTC 1 cut(s) 231
BsmFI GGGAC 2 cut(s) 188, 193
BsmI GAATGC 1 cut(s) 100
BsnI GGCC 2 cut(s) 14, 213
BsoBI CYCGRG 1 cut(s) 230
Bsp1286I GDGCHC 1 cut(s) 81
Bsp143I GATC 1 cut(s) 174
BspACI CCGC 1 cut(s) 523
BspANI GGCC 2 cut(s) 14, 213
BspLI GGNNCC 2 cut(s) 110, 165
BspT107I GGYRCC 1 cut(s) 108
BsrI ACTGG 2 cut(s) 158, 266
BssECI CCNNGG 2 cut(s) 28, 29
BssMI GATC 1 cut(s) 174
BssSI CACGAG 1 cut(s) 122
Bst2BI CACGAG 1 cut(s) 122
Bst2UI CCWGG 3 cut(s) 30, 257, 463
Bst4CI ACNGT 1 cut(s) 418
Bst6I CTCTTC 1 cut(s) 303
BstBAI YACGTR 1 cut(s) 431
BstC8I GCNNGC 2 cut(s) 41, 77
BstDEI CTNAG 1 cut(s) 356
BstH2I RGCGCY 2 cut(s) 40, 122
BstHHI GCGC 2 cut(s) 39, 121
BstKTI GATC 1 cut(s) 177
BstMAI GTCTC 1 cut(s) 231
BstMBI GATC 1 cut(s) 174
BstMWI GCNNNNNNNGC 1 cut(s) 65
BstNI CCWGG 3 cut(s) 30, 257, 463
BstNSI RCATGY 1 cut(s) 72
BstSCI CCNGG 3 cut(s) 28, 255, 461
BstSLI GKGCMC 1 cut(s) 81
BstV1I GCAGC 1 cut(s) 238
BsuRI GGCC 2 cut(s) 14, 213
BtrI CACGTC 1 cut(s) 247
BtsIMutI CAGTG 1 cut(s) 165
Cac8I GCNNGC 2 cut(s) 41, 77
CaiI CAGNNNCTG 1 cut(s) 29
CfoI GCGC 2 cut(s) 39, 121
Cfr13I GGNCC 2 cut(s) 253, 506
CsiI ACCWGGT 1 cut(s) 461
Csp6I GTAC 2 cut(s) 109, 136
CviAII CATG 3 cut(s) 69, 200, 470
CviJI RGCY 6 cut(s) 14, 164, 213, 229, 243, 410
CviKI_1 RGCY 6 cut(s) 14, 164, 213, 229, 243, 410
CviQI GTAC 2 cut(s) 109, 136
DdeI CTNAG 1 cut(s) 356
DpnI GATC 1 cut(s) 176
DpnII GATC 1 cut(s) 174
DrdI GACNNNNNNGTC 1 cut(s) 245
DriI GACNNNNNGTC 1 cut(s) 334
DseDI GACNNNNNNGTC 1 cut(s) 245
EaeI YGGCCR 2 cut(s) 12, 211
Eam1104I CTCTTC 1 cut(s) 303
Eam1105I GACNNNNNGTC 1 cut(s) 334
EarI CTCTTC 1 cut(s) 303
Eco47I GGWCC 2 cut(s) 253, 506
Eco47III AGCGCT 1 cut(s) 38
Eco57I CTGAAG 1 cut(s) 110
Eco72I CACGTG 1 cut(s) 431
Eco88I CYCGRG 1 cut(s) 230
EcoRII CCWGG 3 cut(s) 28, 255, 461
FaeI CATG 3 cut(s) 72, 203, 473
FaiI YATR 8 cut(s) 70, 102, 201, 348, 471, 497, 516, 518
FaqI GGGAC 2 cut(s) 188, 193
FatI CATG 3 cut(s) 68, 199, 469
FblI GTMKAC 1 cut(s) 338
Fnu4HI GCNGC 1 cut(s) 227
Fsp4HI GCNGC 1 cut(s) 227
GlaI GCGC 2 cut(s) 38, 120
GluI GCNGC 1 cut(s) 227
HaeII RGCGCY 2 cut(s) 40, 122
HaeIII GGCC 2 cut(s) 14, 213
HhaI GCGC 2 cut(s) 39, 121
Hin1II CATG 3 cut(s) 72, 203, 473
Hin6I GCGC 2 cut(s) 37, 119
HinP1I GCGC 2 cut(s) 37, 119
HinfI GANTC 1 cut(s) 329
Hpy166II GTNNAC 2 cut(s) 79, 339
Hpy188I TCNGA 2 cut(s) 168, 323
Hpy188III TCNNGA 1 cut(s) 178
Hpy8I GTNNAC 2 cut(s) 79, 339
HpyAV CCTTC 1 cut(s) 469
HpyCH4III ACNGT 1 cut(s) 418
HpyCH4IV ACGT 2 cut(s) 246, 430
HpyCH4V TGCA 3 cut(s) 68, 79, 194
HpyF10VI GCNNNNNNNGC 1 cut(s) 65
HpyF3I CTNAG 1 cut(s) 356
HpySE526I ACGT 2 cut(s) 246, 430
Hsp92II CATG 3 cut(s) 72, 203, 473
HspAI GCGC 2 cut(s) 37, 119
KpnI GGTACC 1 cut(s) 112
Kzo9I GATC 1 cut(s) 174
LmnI GCTCC 2 cut(s) 169, 415
Lsp1109I GCAGC 1 cut(s) 238
LweI GCATC 1 cut(s) 181
MabI ACCWGGT 1 cut(s) 461
MaeII ACGT 2 cut(s) 246, 430
MaeIII GTNAC 1 cut(s) 455
MalI GATC 1 cut(s) 176
MboI GATC 1 cut(s) 174
MboII GAAGA 2 cut(s) 103, 320
MhlI GDGCHC 1 cut(s) 81
MlsI TGGCCA 1 cut(s) 14
MluCI AATT 4 cut(s) 129, 268, 483, 511
MluNI TGGCCA 1 cut(s) 14
MlyI GAGTC 1 cut(s) 323
MmeI TCCRAC 2 cut(s) 301, 437
MnlI CCTC 2 cut(s) 108, 304
Mox20I TGGCCA 1 cut(s) 14
MscI TGGCCA 1 cut(s) 14
Msp20I TGGCCA 1 cut(s) 14
MspR9I CCNGG 3 cut(s) 30, 257, 463
Mva1269I GAATGC 1 cut(s) 100
MvaI CCWGG 3 cut(s) 30, 257, 463
MwoI GCNNNNNNNGC 1 cut(s) 65
NdeII GATC 1 cut(s) 174
NlaIII CATG 3 cut(s) 72, 203, 473
NlaIV GGNNCC 2 cut(s) 110, 165
NspI RCATGY 1 cut(s) 72
PasI CCCWGGG 1 cut(s) 29
PctI GAATGC 1 cut(s) 100
PkrI GCNGC 1 cut(s) 228
PleI GAGTC 1 cut(s) 323
PmaCI CACGTG 1 cut(s) 431
PmlI CACGTG 1 cut(s) 431
PpsI GAGTC 1 cut(s) 323
Ppu21I YACGTR 1 cut(s) 431
Psp6I CCWGG 3 cut(s) 28, 255, 461
PspCI CACGTG 1 cut(s) 431
PspGI CCWGG 3 cut(s) 28, 255, 461
PspN4I GGNNCC 2 cut(s) 110, 165
PspPI GGNCC 2 cut(s) 253, 506
PstNI CAGNNNCTG 1 cut(s) 29
RsaI GTAC 2 cut(s) 110, 137
RsaNI GTAC 2 cut(s) 109, 136
SatI GCNGC 1 cut(s) 227
Sau3AI GATC 1 cut(s) 174
Sau96I GGNCC 2 cut(s) 253, 506
SchI GAGTC 1 cut(s) 323
ScrFI CCNGG 3 cut(s) 30, 257, 463
SduI GDGCHC 1 cut(s) 81
SexAI ACCWGGT 1 cut(s) 461
SfaNI GCATC 1 cut(s) 181
SinI GGWCC 2 cut(s) 253, 506
SmlI CTYRAG 1 cut(s) 331
SmoI CTYRAG 1 cut(s) 331
Sse9I AATT 4 cut(s) 129, 268, 483, 511
SsiI CCGC 1 cut(s) 523
StyD4I CCNGG 3 cut(s) 28, 255, 461
TaaI ACNGT 1 cut(s) 418
TaiI ACGT 2 cut(s) 249, 433
TaqI TCGA 1 cut(s) 399
TasI AATT 4 cut(s) 129, 268, 483, 511
TatI WGTACW 1 cut(s) 135
TscAI CASTG 1 cut(s) 165
TseI GCWGC 1 cut(s) 226
TspDTI ATGAA 3 cut(s) 321, 399, 458
TspGWI ACGGA 1 cut(s) 359
TspRI CASTG 1 cut(s) 165
VneI GTGCAC 1 cut(s) 77
VpaK11BI GGWCC 2 cut(s) 253, 506
XapI RAATTY 1 cut(s) 268
XceI RCATGY 1 cut(s) 72
XmiI GTMKAC 1 cut(s) 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.