Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0006434

Physical Location & Seq

Genomic Coordinates Reverse (-)

28145635 .. 28147438

Gene Structure 1804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG270000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGCAGATGTTCCTCAGTGCATTAATAGTTGTTGCTGGGCATGCTGGAAAGCTAGATGCTGCCTTTGAAATCATACATGAAGCCAGAATTCAAGGAATACAAGTTGGAACTGTATCATATAGCTCATTGATGGGCGCATGTAGCAATGCCAAAAATTGGCAGAAAGCACTGGAGCTCTATGAGGATCTTAAGTCAGCTAAAATTGAGCAGACTGTTTCAACTGTCAATGCTTTTATTACTGCCCTATGTGATGGGGATCAACTACAGAAGGCTATGGCAGTTCTGTCGGAAATGAAGAGTATAGGACTGCGTCCAAACAGTATAACATACTCCATACTTGTAGTGGCAAGTGAAAAGAAGGATGATCTAGAAGCTGGCCTACTGGTCCTTTCTCAAGCTGAAAAGGATAAAGTTGTTCCAAATCTTGTCATGTGTAGATGCATTATAGGCATGTGCTTACGGAGATTTGAGAAGGCATGTACACTGGGTGAAACTGTCTTGCCACATTTGTCTCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010468 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0016070 GO:0016787 GO:0016788 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043487 GO:0043488 GO:0043489 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045934 GO:0046483 GO:0048255 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1902369 GO:1902373 GO:1903311 GO:1903312

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

172

Amino Acids

18.7

Weight (kDa)

6.41

Isoelectric Point (pI)

35.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	13 - 120	5.1e-09	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	24 - 82	5.7e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	36 - 84	8.3e-09	PPR repeat family
PPR_2	PF13041	71 - 114	5.3e-11	PPR repeat family
PPR_3	PF13812	94 - 152	5.5e-06	Pentatricopeptide repeat domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006434)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000010047 RLG00000020064 RLG00000028774
rosa_multiflora	Rmu_sc0001306.1_g000022 Rmu_sc0001438.1_g000035
rosa_roxburghii	Rroxscaffold_2G00101450 Rroxscaffold_7G00192090
rosa_rugosa	Rorug05G0119200 Rorug05G0119300 Rorug05G0119400 Rorug05G0119500 Rorug05G0119600 Rorug05G0119600 Rorug05G0119700 Rorug05G0119800 Rorug05G0119900 Rorug05G0120000
rosa_samantha	Rh2AG339800 Rh2AG437400 Rh2CG423700 Rh2DG357000 Rh2DG455400 Rh3CG365400 Rh6BG318500 Rh6CG026900 Rh7AG270000 Rh7CG289200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	156
AclWI	GGATC	2 cut(s)	192, 264
AcsI	RAATTY	1 cut(s)	87
AdeI	CACNNNGTG	1 cut(s)	488
AfaI	GTAC	1 cut(s)	481
AfiI	CCNNNNNNNGG	1 cut(s)	156
AflII	CTTAAG	1 cut(s)	188
AgsI	TTSAA	3 cut(s)	68, 92, 219
AluBI	AGCT	6 cut(s)	52, 123, 175, 197, 374, 398
AluI	AGCT	6 cut(s)	52, 123, 175, 197, 374, 398
Alw21I	GWGCWC	1 cut(s)	177
AlwI	GGATC	2 cut(s)	192, 264
AoxI	GGCC	1 cut(s)	376
ApeKI	GCWGC	1 cut(s)	59
ApoI	RAATTY	1 cut(s)	87
AseI	ATTAAT	1 cut(s)	23
AspLEI	GCGC	1 cut(s)	137
AspS9I	GGNCC	1 cut(s)	385
AsuHPI	GGTGA	1 cut(s)	500
AvaII	GGWCC	1 cut(s)	385
BanII	GRGCYC	1 cut(s)	177
BarI	GAAGNNNNNNTAC	2 cut(s)	363, 395
Bbv12I	GWGCWC	1 cut(s)	177
BbvI	GCAGC	1 cut(s)	46
BccI	CCATC	2 cut(s)	124, 245
BcgI	CGANNNNNNTGC	2 cut(s)	267, 301
BfaI	CTAG	2 cut(s)	53, 368
BfmI	CTRYAG	1 cut(s)	263
BfrI	CTTAAG	1 cut(s)	188
BisI	GCNGC	1 cut(s)	60
BlsI	GCNGC	1 cut(s)	61
Bme18I	GGWCC	1 cut(s)	385
BmgT120I	GGNCC	1 cut(s)	385
BmrI	ACTGGG	1 cut(s)	494
BmsI	GCATC	2 cut(s)	46, 428
BmuI	ACTGGG	1 cut(s)	494
BpmI	CTGGAG	1 cut(s)	191
BpuEI	CTTGAG	1 cut(s)	378
BsaBI	GATNNNNATC	1 cut(s)	255
Bsc4I	CCNNNNNNNGG	1 cut(s)	156
Bse1I	ACTGG	3 cut(s)	174, 387, 489
Bse3DI	GCAATG	1 cut(s)	151
Bse8I	GATNNNNATC	1 cut(s)	255
BseGI	GGATG	1 cut(s)	367
BseJI	GATNNNNATC	1 cut(s)	255
BseLI	CCNNNNNNNGG	1 cut(s)	156
BseMI	GCAATG	1 cut(s)	151
BseMII	CTCAG	1 cut(s)	28
BseNI	ACTGG	3 cut(s)	174, 387, 489
BseXI	GCAGC	1 cut(s)	46
BseYI	CCCAGC	1 cut(s)	35
BshFI	GGCC	1 cut(s)	378
BsiHKAI	GWGCWC	1 cut(s)	177
BslI	CCNNNNNNNGG	1 cut(s)	156
BsnI	GGCC	1 cut(s)	378
Bsp1286I	GDGCHC	1 cut(s)	177
Bsp1407I	TGTACA	1 cut(s)	479
Bsp143I	GATC	3 cut(s)	184, 256, 364
BspANI	GGCC	1 cut(s)	378
BspCNI	CTCAG	1 cut(s)	27
BspPI	GGATC	2 cut(s)	192, 264
BspTI	CTTAAG	1 cut(s)	188
BsrDI	GCAATG	1 cut(s)	151
BsrGI	TGTACA	1 cut(s)	479
BsrI	ACTGG	3 cut(s)	174, 387, 489
BssMI	GATC	3 cut(s)	184, 256, 364
Bst4CI	ACNGT	5 cut(s)	112, 214, 223, 320, 496
Bst6I	CTCTTC	1 cut(s)	290
BstAFI	CTTAAG	1 cut(s)	188
BstAUI	TGTACA	1 cut(s)	479
BstC8I	GCNNGC	2 cut(s)	42, 376
BstDEI	CTNAG	1 cut(s)	14
BstF5I	GGATG	1 cut(s)	367
BstHHI	GCGC	1 cut(s)	137
BstKTI	GATC	3 cut(s)	187, 259, 367
BstMBI	GATC	3 cut(s)	184, 256, 364
BstMWI	GCNNNNNNNGC	3 cut(s)	41, 141, 447
BstNSI	RCATGY	4 cut(s)	44, 141, 454, 480
BstSFI	CTRYAG	1 cut(s)	263
BstV1I	GCAGC	1 cut(s)	46
BstX2I	RGATCY	1 cut(s)	184
BstYI	RGATCY	1 cut(s)	184
BsuRI	GGCC	1 cut(s)	378
BtsCI	GGATG	1 cut(s)	367
BtsIMutI	CAGTG	3 cut(s)	22, 167, 482
Cac8I	GCNNGC	2 cut(s)	42, 376
CfoI	GCGC	1 cut(s)	137
Cfr13I	GGNCC	1 cut(s)	385
CseI	GACGC	1 cut(s)	299
Csp6I	GTAC	1 cut(s)	480
CviAII	CATG	6 cut(s)	41, 77, 138, 430, 451, 477
CviJI	RGCY	9 cut(s)	52, 83, 123, 175, 197, 272, 374, 378, 398
CviKI_1	RGCY	9 cut(s)	52, 83, 123, 175, 197, 272, 374, 378, 398
CviQI	GTAC	1 cut(s)	480
DdeI	CTNAG	1 cut(s)	14
DpnI	GATC	3 cut(s)	186, 258, 366
DpnII	GATC	3 cut(s)	184, 256, 364
DraIII	CACNNNGTG	1 cut(s)	488
Eam1104I	CTCTTC	1 cut(s)	290
EarI	CTCTTC	1 cut(s)	290
Ecl136II	GAGCTC	1 cut(s)	175
Eco24I	GRGCYC	1 cut(s)	177
Eco47I	GGWCC	1 cut(s)	385
Eco53kI	GAGCTC	1 cut(s)	175
EcoICRI	GAGCTC	1 cut(s)	175
EcoRI	GAATTC	1 cut(s)	87
EcoT22I	ATGCAT	1 cut(s)	443
EcoT38I	GRGCYC	1 cut(s)	177
FaeI	CATG	6 cut(s)	44, 80, 141, 433, 454, 480
FatI	CATG	6 cut(s)	40, 76, 137, 429, 450, 476
Fnu4HI	GCNGC	1 cut(s)	60
FokI	GGATG	1 cut(s)	374
FriOI	GRGCYC	1 cut(s)	177
Fsp4HI	GCNGC	1 cut(s)	60
FspBI	CTAG	2 cut(s)	53, 368
GlaI	GCGC	1 cut(s)	136
GluI	GCNGC	1 cut(s)	60
GsaI	CCCAGC	1 cut(s)	39
GsuI	CTGGAG	1 cut(s)	191
HaeIII	GGCC	1 cut(s)	378
HgaI	GACGC	1 cut(s)	299
HhaI	GCGC	1 cut(s)	137
Hin1II	CATG	6 cut(s)	44, 80, 141, 433, 454, 480
Hin6I	GCGC	1 cut(s)	135
HinP1I	GCGC	1 cut(s)	135
HphI	GGTGA	1 cut(s)	500
Hpy166II	GTNNAC	1 cut(s)	482
Hpy188I	TCNGA	1 cut(s)	289
Hpy188III	TCNNGA	1 cut(s)	368
Hpy8I	GTNNAC	1 cut(s)	482
HpyAV	CCTTC	3 cut(s)	262, 352, 466
HpyCH4III	ACNGT	5 cut(s)	112, 214, 223, 320, 496
HpyCH4V	TGCA	3 cut(s)	4, 20, 441
HpyF10VI	GCNNNNNNNGC	3 cut(s)	41, 141, 447
HpyF3I	CTNAG	1 cut(s)	14
Hsp92II	CATG	6 cut(s)	44, 80, 141, 433, 454, 480
HspAI	GCGC	1 cut(s)	135
Kzo9I	GATC	3 cut(s)	184, 256, 364
LmnI	GCTCC	1 cut(s)	172
LpnPI	CCDG	7 cut(s)	21, 30, 97, 155, 360, 368, 470
Lsp1109I	GCAGC	1 cut(s)	46
LweI	GCATC	2 cut(s)	46, 428
MaeI	CTAG	2 cut(s)	53, 368
MalI	GATC	3 cut(s)	186, 258, 366
MboI	GATC	3 cut(s)	184, 256, 364
MboII	GAAGA	1 cut(s)	307
MflI	RGATCY	1 cut(s)	184
MhlI	GDGCHC	1 cut(s)	177
MluCI	AATT	3 cut(s)	87, 154, 201
MmeI	TCCRAC	2 cut(s)	85, 267
MnlI	CCTC	2 cut(s)	23, 175
Mph1103I	ATGCAT	1 cut(s)	443
MseI	TTAA	2 cut(s)	23, 189
MspCI	CTTAAG	1 cut(s)	188
MwoI	GCNNNNNNNGC	3 cut(s)	41, 141, 447
NdeII	GATC	3 cut(s)	184, 256, 364
NlaIII	CATG	6 cut(s)	44, 80, 141, 433, 454, 480
NsiI	ATGCAT	1 cut(s)	443
NspI	RCATGY	4 cut(s)	44, 141, 454, 480
PaeI	GCATGC	1 cut(s)	44
PflFI	GACNNNGTC	1 cut(s)	309
PflMI	CCANNNNNTGG	1 cut(s)	156
PkrI	GCNGC	1 cut(s)	61
PshBI	ATTAAT	1 cut(s)	23
Psp124BI	GAGCTC	1 cut(s)	177
PspFI	CCCAGC	1 cut(s)	35
PspPI	GGNCC	1 cut(s)	385
PsuI	RGATCY	1 cut(s)	184
PsyI	GACNNNGTC	1 cut(s)	309
RsaI	GTAC	1 cut(s)	481
RsaNI	GTAC	1 cut(s)	480
SacI	GAGCTC	1 cut(s)	177
SaqAI	TTAA	2 cut(s)	23, 189
SatI	GCNGC	1 cut(s)	60
Sau3AI	GATC	3 cut(s)	184, 256, 364
Sau96I	GGNCC	1 cut(s)	385
SduI	GDGCHC	1 cut(s)	177
SetI	ASST	6 cut(s)	54, 125, 177, 199, 376, 400
SfaNI	GCATC	2 cut(s)	46, 428
SfcI	CTRYAG	1 cut(s)	263
SinI	GGWCC	1 cut(s)	385
SmlI	CTYRAG	2 cut(s)	188, 393
SmoI	CTYRAG	2 cut(s)	188, 393
SphI	GCATGC	1 cut(s)	44
Sse9I	AATT	3 cut(s)	87, 154, 201
SspMI	CTAG	2 cut(s)	53, 368
SstI	GAGCTC	1 cut(s)	177
TaaI	ACNGT	5 cut(s)	112, 214, 223, 320, 496
TasI	AATT	3 cut(s)	87, 154, 201
TatI	WGTACW	1 cut(s)	479
Tru1I	TTAA	2 cut(s)	23, 189
Tru9I	TTAA	2 cut(s)	23, 189
TscAI	CASTG	3 cut(s)	22, 174, 489
TseI	GCWGC	1 cut(s)	59
TspDTI	ATGAA	2 cut(s)	93, 308
TspGWI	ACGGA	1 cut(s)	475
TspRI	CASTG	3 cut(s)	22, 174, 489
Tth111I	GACNNNGTC	1 cut(s)	309
Van91I	CCANNNNNTGG	1 cut(s)	156
Vha464I	CTTAAG	1 cut(s)	188
VpaK11BI	GGWCC	1 cut(s)	385
VspI	ATTAAT	1 cut(s)	23
XapI	RAATTY	1 cut(s)	87
XbaI	TCTAGA	1 cut(s)	367
XceI	RCATGY	4 cut(s)	44, 141, 454, 480
XcmI	CCANNNNNNNNNTGG	1 cut(s)	340
XspI	CTAG	2 cut(s)	53, 368
Zsp2I	ATGCAT	1 cut(s)	443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.