Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0006434

Physical Location & Seq

Genomic Coordinates Forward (+)

10561576 .. 10565319

Gene Structure 3744 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0119800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1833 bp

ATGGGGGCGAGCGGAACGGAACCGAGCGGCGGCGGCGAGGGGCTGAAGAGGCGAGGGTGTTCGTGCGGAAAGAACGATTTTCTCCCGGAGGAGTCGTTCGAGAGCTGGGGCAATTACGCCAATGCGCTCCGGTCGACTCCGGAGAGGTTCAAGGACAGGTTCTTCACGCGGTCCTCCGACAGCACCGAGCTGGTGGAGGTGAAGGCGAGGAGCCAGCACGAGATGAAGAAGACGCTCAACTGGTGGGACCTCATCTGGTTCGGGCTCGGAGCCGTCATCGGCGCCGGAATCTTCGTCCTCACTGGACTCGAGGCCAAGAAACACGCCGGACCCGCCGTCGTCATGTCCTACGTCGTCTCCGGCGTCTCCGCCTTGCTCTCTGTTTTCTGTTACACAGAGTTCGCCGTCGAGATTCCCGTTGCAGGCGGCTCATTTGCCTACCTAAGAGTGGAGCTTGGGGACTTCGTGGCCTACATTGCAGCAGGCAACATCCTTCTCGAATATGTCATAGGCGGGGCGGCCGTTGCGCGTTCGTGGACCTCCTACTTCACCTCCCTATGCAACCAGGACGATTCCAATGCTTTCCGAATCACTGTCCACGGTTGGTCGGAGGACTACAAGTACCTGGACCCCATCGCCATTGGGGTTATCATCTTTATCTGCATACTCGCCGTCTTGAGCACAAAGGGCTCCTCGCGCCTCAACTACGTCGCCTCCATAGTCCACGTCATCGTCATTCTCTTCATCATCATAGCAGGTCTCACCAAAGCAGATACTAACAACTACAAGGATTTTGCCCCACATAGTGCTCGCGGCGTGTTCCAAGCCTCGGCAGTTCTCTTCTTCGCATACGTTGGATTTGACGCCGTTGCAACCATGGCCGAAGAGACCAAGAATCCTGCTCGTGACATCCCAATAGGGCTGGTTGGGTCCATGGTGATCACCACCACTCTTTATTGCTTGCTAGCCGTGACACTCTGCCTTATGGTACCGTATCAGGAAATTGATGAGGACGCTCCATTTTCAAAAGCGTTTGAGACAGTTGGTATGGGTTGGGCCAAGTATGTGGTTGCAGCTGGAGCTCTAAAAGGCATGACTAGTGTTTTGCTCGTCGGGGCAGTGGGTCAGGCCCGGTATTTGACCCACATTGCCCGAACCCACATGATGCCCCCATGGTTTGCTCAAGTTGATGCCAAGACAGGTACTCCAGTCAATGCCACAATTGTCATGCTCGCAGCCACAGCTGTAATCGCTTTCTTCACCAGCCTCGACATTCTTGCTAACCTTCTCTCCATTTCTACGCTATTCATCTTCAGCCTCGTTGCCATTGCTCTACTCGTACGCCGTTACTATGTAACCGGCGTGACCACGAATGCAAACAGGAATAAGCTCATACTGTGCATTGTTATGATACTCGCGGGTGCAATTGCCACTTCTGCTTATTGGGGTGTCAGCCATGATTGGGTAGGGTATTGTGTGACGGCTCCTATTTGGTTCTTGGGGACTTTGGGGATTTGGTTTCTTGTTCCGCAAGCAAGGAGTCCAAAGCTTTGGGGGGTGCCATTGGTTCCATGGTTGCCTTCACTTTCGATTGGCATCAACATTTTCTTGCTTGGTTCGATTGATGGTGCTTCTTTTGTCAGGTTTGCAGTATGGACTGTGATTATCTTGGTTTACTACATTTTCTTTGGGTTGCATGCTTCATATGACACAGCAAAAGACTCTGAAGCTAAGAAGCTCGAGGGTGGGAAATACGAGACGAAGGTTGAAGGAACTAAGGACTCTGGTTTGGATGGTGCGTATAGCAAGGCCTCTACAGAACCTGCTAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010468 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0016070 GO:0016787 GO:0016788 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043487 GO:0043488 GO:0043489 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045934 GO:0046483 GO:0048255 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1902369 GO:1902373 GO:1903311 GO:1903312

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

610

Amino Acids

66.01

Weight (kDa)

6.52

Isoelectric Point (pI)

31.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AA_permease_2	PF13520	79 - 450	9.5e-54	Amino acid permease
AA_permease	PF00324	84 - 471	9.4e-36	Amino acid permease
AA_permease_C	PF13906	518 - 568	1.5e-17	C-terminus of AA_permease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006434)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000010047 RLG00000020064 RLG00000028774
rosa_multiflora	Rmu_sc0001306.1_g000022 Rmu_sc0001438.1_g000035
rosa_roxburghii	Rroxscaffold_2G00101450 Rroxscaffold_7G00192090
rosa_rugosa	Rorug05G0119200 Rorug05G0119300 Rorug05G0119400 Rorug05G0119500 Rorug05G0119600 Rorug05G0119600 Rorug05G0119700 Rorug05G0119800 Rorug05G0119900 Rorug05G0120000
rosa_samantha	Rh2AG339800 Rh2AG437400 Rh2CG423700 Rh2DG357000 Rh2DG455400 Rh3CG365400 Rh6BG318500 Rh6CG026900 Rh7AG270000 Rh7CG289200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	746
Acc65I	GGTACC	1 cut(s)	988
AccB1I	GGYRCC	3 cut(s)	281, 988, 1558
AccBSI	CCGCTC	2 cut(s)	12, 27
AccI	GTMKAC	1 cut(s)	134
AccII	CGCG	5 cut(s)	169, 529, 697, 813, 1418
AccIII	TCCGGA	1 cut(s)	139
AcoI	YGGCCR	2 cut(s)	519, 879
AcuI	CTGAAG	3 cut(s)	65, 1297, 1746
AcyI	GRCGYC	3 cut(s)	282, 363, 864
AdeI	CACNNNGTG	1 cut(s)	806
AfaI	GTAC	4 cut(s)	623, 990, 1204, 1341
AfiI	CCNNNNNNNGG	5 cut(s)	29, 422, 448, 829, 1462
AgsI	TTSAA	3 cut(s)	151, 1026, 1769
AhdI	GACNNNNNGTC	1 cut(s)	335
AhlI	ACTAGT	1 cut(s)	1097
AjiI	CACGTC	1 cut(s)	727
AjnI	CCWGG	2 cut(s)	564, 624
AloI	GAACNNNNNNTCC	2 cut(s)	80, 112
Alw21I	GWGCWC	3 cut(s)	683, 811, 1084
Alw26I	GTCTC	6 cut(s)	361, 370, 764, 881, 1031, 1751
AlwNI	CAGNNNCTG	1 cut(s)	1823
Ama87I	CYCGRG	2 cut(s)	308, 1739
Aor13HI	TCCGGA	1 cut(s)	139
AoxI	GGCC	7 cut(s)	312, 468, 519, 879, 1056, 1128, 1809
ApeKI	GCWGC	3 cut(s)	479, 1073, 1235
ArsI	GACNNNNNNTTYG	2 cut(s)	1087, 1119
Asp718I	GGTACC	1 cut(s)	988
AspLEI	GCGC	4 cut(s)	127, 284, 529, 699
AspS9I	GGNCC	8 cut(s)	171, 247, 329, 537, 628, 930, 1056, 1129
AsuC2I	CCSGG	2 cut(s)	86, 1132
AsuHPI	GGTGA	6 cut(s)	211, 541, 754, 934, 949, 1252
AsuNHI	GCTAGC	1 cut(s)	964
AvaI	CYCGRG	2 cut(s)	308, 1739
AvaII	GGWCC	6 cut(s)	171, 247, 329, 537, 628, 930
BaeI	ACNNNNGTAYC	2 cut(s)	1194, 1227
BanI	GGYRCC	3 cut(s)	281, 988, 1558
BanII	GRGCYC	3 cut(s)	267, 692, 1084
BauI	CACGAG	2 cut(s)	218, 903
BbsI	GAAGAC	1 cut(s)	236
Bbv12I	GWGCWC	3 cut(s)	683, 811, 1084
BbvI	GCAGC	3 cut(s)	491, 1085, 1247
BccI	CCATC	3 cut(s)	641, 1619, 1787
BceAI	ACGGC	9 cut(s)	257, 320, 389, 506, 656, 851, 953, 1329, 1497
BcgI	CGANNNNNNTGC	4 cut(s)	560, 594, 1259, 1293
BciT130I	CCWGG	2 cut(s)	566, 626
BclI	TGATCA	1 cut(s)	939
BcnI	CCSGG	2 cut(s)	86, 1132
BcoDI	GTCTC	6 cut(s)	361, 370, 764, 881, 1031, 1751
BcuI	ACTAGT	1 cut(s)	1097
BfaI	CTAG	3 cut(s)	965, 1098, 1827
BfmI	CTRYAG	1 cut(s)	1815
BfoI	RGCGCY	1 cut(s)	285
BfuAI	ACCTGC	1 cut(s)	746
BisI	GCNGC	9 cut(s)	28, 31, 34, 427, 480, 519, 814, 1074, 1236
BlsI	GCNGC	9 cut(s)	29, 32, 35, 428, 481, 520, 815, 1075, 1237
Bme1390I	CCNGG	4 cut(s)	86, 566, 626, 1132
Bme18I	GGWCC	6 cut(s)	171, 247, 329, 537, 628, 930
BmeRI	GACNNNNNGTC	1 cut(s)	335
BmeT110I	CYCGRG	2 cut(s)	308, 1739
BmgBI	CACGTC	1 cut(s)	727
BmgT120I	GGNCC	8 cut(s)	171, 247, 329, 537, 628, 930, 1056, 1129
BmrFI	CCNGG	4 cut(s)	86, 566, 626, 1132
BmsI	GCATC	3 cut(s)	1155, 1180, 1605
BmtI	GCTAGC	1 cut(s)	968
BpiI	GAAGAC	1 cut(s)	236
BpmI	CTGGAG	2 cut(s)	1098, 1191
BpuEI	CTTGAG	2 cut(s)	697, 1167
BpuMI	CCSGG	2 cut(s)	86, 1132
BsaBI	GATNNNNATC	1 cut(s)	1595
BsaHI	GRCGYC	3 cut(s)	282, 363, 864
BsaI	GGTCTC	2 cut(s)	764, 881
BsaJI	CCNNGG	6 cut(s)	598, 828, 876, 933, 1172, 1571
BsaWI	WCCGGW	2 cut(s)	129, 139
Bsc4I	CCNNNNNNNGG	5 cut(s)	29, 422, 448, 829, 1462
Bse118I	RCCGGY	1 cut(s)	1358
Bse1I	ACTGG	3 cut(s)	245, 307, 1208
Bse3DI	GCAATG	3 cut(s)	474, 1146, 1326
Bse8I	GATNNNNATC	1 cut(s)	1595
BseAI	TCCGGA	1 cut(s)	139
BseBI	CCWGG	2 cut(s)	566, 626
BseDI	CCNNGG	6 cut(s)	598, 828, 876, 933, 1172, 1571
BseGI	GGATG	3 cut(s)	489, 909, 1798
BseJI	GATNNNNATC	1 cut(s)	1595
BseLI	CCNNNNNNNGG	5 cut(s)	29, 422, 448, 829, 1462
BseMI	GCAATG	3 cut(s)	474, 1146, 1326
BseNI	ACTGG	3 cut(s)	245, 307, 1208
BseRI	GAGGAG	3 cut(s)	104, 223, 682
BseX3I	CGGCCG	1 cut(s)	519
BseXI	GCAGC	3 cut(s)	491, 1085, 1247
BseYI	CCCAGC	1 cut(s)	105
Bsh1236I	CGCG	5 cut(s)	169, 529, 697, 813, 1418
Bsh1285I	CGRYCG	2 cut(s)	134, 522
BshFI	GGCC	7 cut(s)	314, 470, 521, 881, 1058, 1130, 1811
BshNI	GGYRCC	3 cut(s)	281, 988, 1558
BsiEI	CGRYCG	2 cut(s)	134, 522
BsiHKAI	GWGCWC	3 cut(s)	683, 811, 1084
BsiHKCI	CYCGRG	2 cut(s)	308, 1739
BsiSI	CCGG	8 cut(s)	86, 130, 140, 285, 327, 360, 1132, 1359
BsiWI	CGTACG	1 cut(s)	1339
BslFI	GGGAC	3 cut(s)	260, 473, 1516
BslI	CCNNNNNNNGG	5 cut(s)	29, 422, 448, 829, 1462
BsmAI	GTCTC	6 cut(s)	361, 370, 764, 881, 1031, 1751
BsmBI	CGTCTC	3 cut(s)	361, 370, 1751
BsmFI	GGGAC	3 cut(s)	260, 473, 1516
BsmI	GAATGC	1 cut(s)	1378
BsnI	GGCC	7 cut(s)	314, 470, 521, 881, 1058, 1130, 1811
Bso31I	GGTCTC	2 cut(s)	764, 881
BsoBI	CYCGRG	2 cut(s)	308, 1739
Bsp1286I	GDGCHC	5 cut(s)	267, 683, 692, 811, 1084
Bsp13I	TCCGGA	1 cut(s)	139
Bsp143I	GATC	1 cut(s)	939
Bsp19I	CCATGG	4 cut(s)	876, 933, 1172, 1571
BspANI	GGCC	7 cut(s)	314, 470, 521, 881, 1058, 1130, 1811
BspEI	TCCGGA	1 cut(s)	139
BspFNI	CGCG	5 cut(s)	169, 529, 697, 813, 1418
BspMI	ACCTGC	1 cut(s)	746
BspOI	GCTAGC	1 cut(s)	968
BspT107I	GGYRCC	3 cut(s)	281, 988, 1558
BspTNI	GGTCTC	2 cut(s)	764, 881
BsrBI	CCGCTC	2 cut(s)	12, 27
BsrDI	GCAATG	3 cut(s)	474, 1146, 1326
BsrFI	RCCGGY	1 cut(s)	1358
BsrI	ACTGG	3 cut(s)	245, 307, 1208
BssAI	RCCGGY	1 cut(s)	1358
BssECI	CCNNGG	6 cut(s)	598, 828, 876, 933, 1172, 1571
BssMI	GATC	1 cut(s)	939
BssNI	GRCGYC	3 cut(s)	282, 363, 864
BssSI	CACGAG	2 cut(s)	218, 903
BssT1I	CCWWGG	4 cut(s)	876, 933, 1172, 1571
Bst2BI	CACGAG	2 cut(s)	218, 903
Bst2UI	CCWGG	2 cut(s)	566, 626
Bst4CI	ACNGT	6 cut(s)	595, 602, 993, 1042, 1398, 1660
Bst6I	CTCTTC	4 cut(s)	41, 746, 845, 879
BstACI	GRCGYC	3 cut(s)	282, 363, 864
BstDEI	CTNAG	3 cut(s)	443, 1731, 1776
BstDSI	CCRYGG	5 cut(s)	598, 876, 933, 1172, 1571
BstF5I	GGATG	3 cut(s)	489, 909, 1798
BstFNI	CGCG	5 cut(s)	169, 529, 697, 813, 1418
BstH2I	RGCGCY	1 cut(s)	285
BstHHI	GCGC	4 cut(s)	127, 284, 529, 699
BstKTI	GATC	1 cut(s)	942
BstMAI	GTCTC	6 cut(s)	361, 370, 764, 881, 1031, 1751
BstMBI	GATC	1 cut(s)	939
BstMCI	CGRYCG	2 cut(s)	134, 522
BstNI	CCWGG	2 cut(s)	566, 626
BstNSI	RCATGY	1 cut(s)	1700
BstSCI	CCNGG	4 cut(s)	84, 564, 624, 1130
BstSFI	CTRYAG	1 cut(s)	1815
BstUI	CGCG	5 cut(s)	169, 529, 697, 813, 1418
BstV1I	GCAGC	3 cut(s)	491, 1085, 1247
BstV2I	GAAGAC	1 cut(s)	236
BstXI	CCANNNNNNTGG	2 cut(s)	1066, 1551
BstZI	CGGCCG	1 cut(s)	519
BsuRI	GGCC	7 cut(s)	314, 470, 521, 881, 1058, 1130, 1811
BtgI	CCRYGG	5 cut(s)	598, 876, 933, 1172, 1571
BtgZI	GCGATG	1 cut(s)	619
BtrI	CACGTC	1 cut(s)	727
BtsCI	GGATG	3 cut(s)	489, 909, 1798
BtsI	GCAGTG	1 cut(s)	1125
BtsIMutI	CAGTG	3 cut(s)	300, 591, 1125
BveI	ACCTGC	1 cut(s)	746
CaiI	CAGNNNCTG	1 cut(s)	1823
CfoI	GCGC	4 cut(s)	127, 284, 529, 699
Cfr10I	RCCGGY	1 cut(s)	1358
Cfr13I	GGNCC	8 cut(s)	171, 247, 329, 537, 628, 930, 1056, 1129
CseI	GACGC	4 cut(s)	241, 352, 872, 1022
Csp6I	GTAC	4 cut(s)	622, 989, 1203, 1340
CviQI	GTAC	4 cut(s)	622, 989, 1203, 1340
DdeI	CTNAG	3 cut(s)	443, 1731, 1776
DinI	GGCGCC	1 cut(s)	283
DpnI	GATC	1 cut(s)	941
DpnII	GATC	1 cut(s)	939
DraIII	CACNNNGTG	1 cut(s)	806
DriI	GACNNNNNGTC	1 cut(s)	335
EaeI	YGGCCR	2 cut(s)	519, 879
EagI	CGGCCG	1 cut(s)	519
Eam1104I	CTCTTC	4 cut(s)	41, 746, 845, 879
Eam1105I	GACNNNNNGTC	1 cut(s)	335
EarI	CTCTTC	4 cut(s)	41, 746, 845, 879
EciI	GGCGGA	1 cut(s)	358
Ecl136II	GAGCTC	1 cut(s)	1082
EclXI	CGGCCG	1 cut(s)	519
Eco130I	CCWWGG	4 cut(s)	876, 933, 1172, 1571
Eco147I	AGGCCT	1 cut(s)	1811
Eco24I	GRGCYC	3 cut(s)	267, 692, 1084
Eco31I	GGTCTC	2 cut(s)	764, 881
Eco47I	GGWCC	6 cut(s)	171, 247, 329, 537, 628, 930
Eco52I	CGGCCG	1 cut(s)	519
Eco53kI	GAGCTC	1 cut(s)	1082
Eco57I	CTGAAG	3 cut(s)	65, 1297, 1746
Eco88I	CYCGRG	2 cut(s)	308, 1739
EcoICRI	GAGCTC	1 cut(s)	1082
EcoO109I	RGGNCCY	1 cut(s)	247
EcoRII	CCWGG	2 cut(s)	564, 624
EcoT14I	CCWWGG	4 cut(s)	876, 933, 1172, 1571
EcoT38I	GRGCYC	3 cut(s)	267, 692, 1084
EgeI	GGCGCC	1 cut(s)	283
EheI	GGCGCC	1 cut(s)	283
ErhI	CCWWGG	4 cut(s)	876, 933, 1172, 1571
Esp3I	CGTCTC	3 cut(s)	361, 370, 1751
FaqI	GGGAC	3 cut(s)	260, 473, 1516
FauI	CCCGC	3 cut(s)	340, 506, 1411
FauNDI	CATATG	1 cut(s)	1705
FbaI	TGATCA	1 cut(s)	939
FblI	GTMKAC	1 cut(s)	134
Fnu4HI	GCNGC	9 cut(s)	28, 31, 34, 427, 480, 519, 814, 1074, 1236
FokI	GGATG	3 cut(s)	476, 896, 1805
FriOI	GRGCYC	3 cut(s)	267, 692, 1084
Fsp4HI	GCNGC	9 cut(s)	28, 31, 34, 427, 480, 519, 814, 1074, 1236
FspBI	CTAG	3 cut(s)	965, 1098, 1827
GlaI	GCGC	4 cut(s)	126, 283, 528, 698
GluI	GCNGC	9 cut(s)	28, 31, 34, 427, 480, 519, 814, 1074, 1236
GsaI	CCCAGC	1 cut(s)	109
GsuI	CTGGAG	2 cut(s)	1098, 1191
HaeII	RGCGCY	1 cut(s)	285
HaeIII	GGCC	7 cut(s)	314, 470, 521, 881, 1058, 1130, 1811
HapII	CCGG	8 cut(s)	86, 130, 140, 285, 327, 360, 1132, 1359
HgaI	GACGC	4 cut(s)	241, 352, 872, 1022
HhaI	GCGC	4 cut(s)	127, 284, 529, 699
Hin1I	GRCGYC	3 cut(s)	282, 363, 864
Hin6I	GCGC	4 cut(s)	125, 282, 527, 697
HinP1I	GCGC	4 cut(s)	125, 282, 527, 697
HincII	GTYRAC	1 cut(s)	135
HindII	GTYRAC	1 cut(s)	135
HindIII	AAGCTT	1 cut(s)	1547
HpaII	CCGG	8 cut(s)	86, 130, 140, 285, 327, 360, 1132, 1359
HphI	GGTGA	6 cut(s)	211, 541, 754, 934, 949, 1252
Hpy166II	GTNNAC	5 cut(s)	135, 537, 598, 724, 1675
Hpy188I	TCNGA	5 cut(s)	178, 269, 587, 610, 1726
Hpy188III	TCNNGA	7 cut(s)	100, 140, 409, 497, 676, 905, 998
Hpy8I	GTNNAC	5 cut(s)	135, 537, 598, 724, 1675
Hpy99I	CGWCG	5 cut(s)	341, 356, 410, 713, 1115
HpyAV	CCTTC	6 cut(s)	196, 503, 1295, 1590, 1756, 1763
HpyCH4III	ACNGT	6 cut(s)	595, 602, 993, 1042, 1398, 1660
HpyCH4IV	ACGT	4 cut(s)	351, 708, 726, 852
HpyF3I	CTNAG	3 cut(s)	443, 1731, 1776
HpySE526I	ACGT	4 cut(s)	351, 708, 726, 852
Hsp92I	GRCGYC	3 cut(s)	282, 363, 864
HspAI	GCGC	4 cut(s)	125, 282, 527, 697
KasI	GGCGCC	1 cut(s)	281
Kpn2I	TCCGGA	1 cut(s)	139
KpnI	GGTACC	1 cut(s)	992
Ksp22I	TGATCA	1 cut(s)	939
Kzo9I	GATC	1 cut(s)	939
LmnI	GCTCC	8 cut(s)	132, 210, 269, 451, 695, 1021, 1079, 1489
Lsp1109I	GCAGC	3 cut(s)	491, 1085, 1247
LweI	GCATC	3 cut(s)	1155, 1180, 1605
MaeI	CTAG	3 cut(s)	965, 1098, 1827
MaeII	ACGT	4 cut(s)	351, 708, 726, 852
MaeIII	GTNAC	7 cut(s)	389, 905, 970, 1346, 1354, 1363, 1477
MalI	GATC	1 cut(s)	941
MbiI	CCGCTC	2 cut(s)	12, 27
MboI	GATC	1 cut(s)	939
MfeI	CAATTG	2 cut(s)	1221, 1425
MhlI	GDGCHC	5 cut(s)	267, 683, 692, 811, 1084
MluCI	AATT	4 cut(s)	112, 1002, 1221, 1425
Mly113I	GGCGCC	1 cut(s)	282
MlyI	GAGTC	6 cut(s)	101, 130, 300, 1549, 1715, 1775
MmeI	TCCRAC	3 cut(s)	201, 588, 835
MroI	TCCGGA	1 cut(s)	139
MseI	TTAA	1 cut(s)	1831
MslI	CAYNNNNRTG	1 cut(s)	1406
MspA1I	CMGCKG	2 cut(s)	1076, 1244
MspI	CCGG	8 cut(s)	86, 130, 140, 285, 327, 360, 1132, 1359
MspR9I	CCNGG	4 cut(s)	86, 566, 626, 1132
MunI	CAATTG	2 cut(s)	1221, 1425
Mva1269I	GAATGC	1 cut(s)	1378
MvaI	CCWGG	2 cut(s)	566, 626
MvnI	CGCG	5 cut(s)	169, 529, 697, 813, 1418
NarI	GGCGCC	1 cut(s)	282
NciI	CCSGG	2 cut(s)	86, 1132
NcoI	CCATGG	4 cut(s)	876, 933, 1172, 1571
NdeI	CATATG	1 cut(s)	1705
NdeII	GATC	1 cut(s)	939
NheI	GCTAGC	1 cut(s)	964
NmeAIII	GCCGAG	1 cut(s)	809
NmuCI	GTSAC	4 cut(s)	905, 970, 1363, 1477
NspI	RCATGY	1 cut(s)	1700
PaeI	GCATGC	1 cut(s)	1700
PaeR7I	CTCGAG	2 cut(s)	308, 1739
PceI	AGGCCT	1 cut(s)	1811
PcsI	WCGNNNNNNNCGW	2 cut(s)	360, 414
PctI	GAATGC	1 cut(s)	1378
PfeI	GAWTC	5 cut(s)	288, 412, 572, 588, 895
Pfl23II	CGTACG	1 cut(s)	1339
PfoI	TCCNGGA	1 cut(s)	84
PkrI	GCNGC	9 cut(s)	29, 32, 35, 428, 481, 520, 815, 1075, 1237
PleI	GAGTC	6 cut(s)	100, 130, 300, 1548, 1715, 1775
PluTI	GGCGCC	1 cut(s)	285
PpsI	GAGTC	6 cut(s)	100, 130, 300, 1548, 1715, 1775
PpuMI	RGGWCCY	1 cut(s)	247
Psp124BI	GAGCTC	1 cut(s)	1084
Psp5II	RGGWCCY	1 cut(s)	247
Psp6I	CCWGG	2 cut(s)	564, 624
PspFI	CCCAGC	1 cut(s)	105
PspGI	CCWGG	2 cut(s)	564, 624
PspLI	CGTACG	1 cut(s)	1339
PspPI	GGNCC	8 cut(s)	171, 247, 329, 537, 628, 930, 1056, 1129
PspPPI	RGGWCCY	1 cut(s)	247
PspXI	VCTCGAGB	2 cut(s)	308, 1739
PstNI	CAGNNNCTG	1 cut(s)	1823
PvuII	CAGCTG	2 cut(s)	1076, 1244
RsaI	GTAC	4 cut(s)	623, 990, 1204, 1341
RsaNI	GTAC	4 cut(s)	622, 989, 1203, 1340
RseI	CAYNNNNRTG	1 cut(s)	1406
SacI	GAGCTC	1 cut(s)	1084
SalI	GTCGAC	1 cut(s)	133
SaqAI	TTAA	1 cut(s)	1831
SatI	GCNGC	9 cut(s)	28, 31, 34, 427, 480, 519, 814, 1074, 1236
Sau3AI	GATC	1 cut(s)	939
Sau96I	GGNCC	8 cut(s)	171, 247, 329, 537, 628, 930, 1056, 1129
SchI	GAGTC	6 cut(s)	101, 130, 300, 1549, 1715, 1775
ScrFI	CCNGG	4 cut(s)	86, 566, 626, 1132
SduI	GDGCHC	5 cut(s)	267, 683, 692, 811, 1084
SfaNI	GCATC	3 cut(s)	1155, 1180, 1605
SfcI	CTRYAG	1 cut(s)	1815
SfoI	GGCGCC	1 cut(s)	283
Sfr274I	CTCGAG	2 cut(s)	308, 1739
SinI	GGWCC	6 cut(s)	171, 247, 329, 537, 628, 930
SlaI	CTCGAG	2 cut(s)	308, 1739
SmiMI	CAYNNNNRTG	1 cut(s)	1406
SmlI	CTYRAG	4 cut(s)	308, 676, 1182, 1739
SmoI	CTYRAG	4 cut(s)	308, 676, 1182, 1739
SpeI	ACTAGT	1 cut(s)	1097
SphI	GCATGC	1 cut(s)	1700
Sse9I	AATT	4 cut(s)	112, 1002, 1221, 1425
SseBI	AGGCCT	1 cut(s)	1811
SspDI	GGCGCC	1 cut(s)	281
SspMI	CTAG	3 cut(s)	965, 1098, 1827
SstI	GAGCTC	1 cut(s)	1084
StuI	AGGCCT	1 cut(s)	1811
StyD4I	CCNGG	4 cut(s)	84, 564, 624, 1130
StyI	CCWWGG	4 cut(s)	876, 933, 1172, 1571
TaaI	ACNGT	6 cut(s)	595, 602, 993, 1042, 1398, 1660
TaiI	ACGT	4 cut(s)	354, 711, 729, 855
TaqI	TCGA	9 cut(s)	99, 134, 309, 408, 498, 1269, 1589, 1619, 1740
TasI	AATT	4 cut(s)	112, 1002, 1221, 1425
TauI	GCSGC	6 cut(s)	30, 33, 36, 429, 521, 816
TfiI	GAWTC	5 cut(s)	288, 412, 572, 588, 895
Tru1I	TTAA	1 cut(s)	1831
Tru9I	TTAA	1 cut(s)	1831
TscAI	CASTG	3 cut(s)	307, 598, 1125
TseFI	GTSAC	4 cut(s)	905, 970, 1363, 1477
TseI	GCWGC	3 cut(s)	479, 1073, 1235
Tsp45I	GTSAC	4 cut(s)	905, 970, 1363, 1477
TspDTI	ATGAA	4 cut(s)	239, 733, 1297, 1692
TspGWI	ACGGA	1 cut(s)	32
TspRI	CASTG	3 cut(s)	307, 598, 1125
VpaK11BI	GGWCC	6 cut(s)	171, 247, 329, 537, 628, 930
XceI	RCATGY	1 cut(s)	1700
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1569
XhoI	CTCGAG	2 cut(s)	308, 1739
XmiI	GTMKAC	1 cut(s)	134
XspI	CTAG	3 cut(s)	965, 1098, 1827

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.