Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0006434

Physical Location & Seq

Genomic Coordinates Reverse (-)

57777781 .. 57780495

Gene Structure 2715 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG423700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGATCGACAATCACCGGCTTCAAAGCCAAAGTGAAAAGAAGGCATTATCAACATCAGACTTTGCCCAGCCTCTTGAGTATGATATGGCAATGGAATGGCGCATACAGCAGGAAAAGTCATATTTGTGTCGCAAGGCTTTATATAAGGATCATGAGGACTGGCTAAATTTGAAAGGCACAACAAACATCATCAATATCACAGATGAAGAGGTATTAGTCGGACTTGACTCAATGTCTACATTGTATGACAAACTAAGAAAGACAATCCGTGTGTTTTCAAATGAAAGGAGAAAGTTCGATGTGATAGCTCCAACAGTTAGAATGACATGTGTTGGTAATCTAAAGGAGTATCGTAACACCTGGTTTCATGTGAAGGGTCAAAAGCCTAGCTCCATTCTTATCAGTGATGAAATTTCTAAGGATAAGCAGGAGCGTAGCAGGGATAAACAGGATGTGGTCACTAATATAGTGGCAAAACGATCAGGACATCAGACAGTTGAACGGACCTTTAGAGCTGAGCTTCGAAAGTATAAAAATCTCACCCTTGAAGAAACATTGCAATGCATGCGCTATTCTTTACTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAH RRM_1

Protein Analysis

194

Amino Acids

22.93

Weight (kDa)

9.17

Isoelectric Point (pI)

52.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006434)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000010047 RLG00000020064 RLG00000028774
rosa_multiflora	Rmu_sc0001306.1_g000022 Rmu_sc0001438.1_g000035
rosa_roxburghii	Rroxscaffold_2G00101450 Rroxscaffold_7G00192090
rosa_rugosa	Rorug05G0119200 Rorug05G0119300 Rorug05G0119400 Rorug05G0119500 Rorug05G0119600 Rorug05G0119600 Rorug05G0119700 Rorug05G0119800 Rorug05G0119900 Rorug05G0120000
rosa_samantha	Rh2AG339800 Rh2AG437400 Rh2CG423700 Rh2DG357000 Rh2DG455400 Rh3CG365400 Rh6BG318500 Rh6CG026900 Rh7AG270000 Rh7CG289200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	236
AclWI	GGATC	1 cut(s)	156
AcsI	RAATTY	2 cut(s)	166, 411
AflIII	ACRYGT	1 cut(s)	326
AgsI	TTSAA	5 cut(s)	23, 172, 279, 500, 548
AhdI	GACNNNNNGTC	1 cut(s)	232
AjnI	CCWGG	1 cut(s)	359
AluBI	AGCT	4 cut(s)	308, 390, 515, 520
AluI	AGCT	4 cut(s)	308, 390, 515, 520
AlwI	GGATC	1 cut(s)	156
ApoI	RAATTY	2 cut(s)	166, 411
AspLEI	GCGC	2 cut(s)	102, 570
AspS9I	GGNCC	1 cut(s)	504
AsuHPI	GGTGA	2 cut(s)	5, 532
AsuII	TTCGAA	1 cut(s)	523
AvaII	GGWCC	1 cut(s)	504
BciT130I	CCWGG	1 cut(s)	361
BfaI	CTAG	1 cut(s)	387
BlpI	GCTNAGC	1 cut(s)	516
Bme1390I	CCNGG	1 cut(s)	361
Bme18I	GGWCC	1 cut(s)	504
BmeRI	GACNNNNNGTC	1 cut(s)	232
BmgT120I	GGNCC	1 cut(s)	504
BmrFI	CCNGG	1 cut(s)	361
Bpu1102I	GCTNAGC	1 cut(s)	516
Bpu14I	TTCGAA	1 cut(s)	523
BpuEI	CTTGAG	1 cut(s)	95
Bse118I	RCCGGY	1 cut(s)	15
Bse1I	ACTGG	1 cut(s)	164
Bse3DI	GCAATG	3 cut(s)	96, 554, 566
BseBI	CCWGG	1 cut(s)	361
BseGI	GGATG	1 cut(s)	457
BseMI	GCAATG	3 cut(s)	96, 554, 566
BseMII	CTCAG	1 cut(s)	507
BseNI	ACTGG	1 cut(s)	164
BseYI	CCCAGC	1 cut(s)	66
BsiSI	CCGG	1 cut(s)	16
Bsp119I	TTCGAA	1 cut(s)	523
Bsp143I	GATC	3 cut(s)	3, 148, 479
Bsp1720I	GCTNAGC	1 cut(s)	516
BspCNI	CTCAG	1 cut(s)	508
BspHI	TCATGA	1 cut(s)	151
BspPI	GGATC	1 cut(s)	156
BspT104I	TTCGAA	1 cut(s)	523
BsrDI	GCAATG	3 cut(s)	96, 554, 566
BsrFI	RCCGGY	1 cut(s)	15
BsrI	ACTGG	1 cut(s)	164
BssAI	RCCGGY	1 cut(s)	15
BssMI	GATC	3 cut(s)	3, 148, 479
Bst2UI	CCWGG	1 cut(s)	361
Bst4CI	ACNGT	2 cut(s)	316, 496
Bst6I	CTCTTC	1 cut(s)	201
BstAPI	GCANNNNNTGC	1 cut(s)	565
BstBI	TTCGAA	1 cut(s)	523
BstC8I	GCNNGC	1 cut(s)	566
BstDEI	CTNAG	3 cut(s)	254, 417, 516
BstF5I	GGATG	1 cut(s)	457
BstHHI	GCGC	2 cut(s)	102, 570
BstKTI	GATC	3 cut(s)	6, 151, 482
BstMBI	GATC	3 cut(s)	3, 148, 479
BstMWI	GCNNNNNNNGC	2 cut(s)	106, 565
BstNI	CCWGG	1 cut(s)	361
BstNSI	RCATGY	2 cut(s)	330, 568
BstSCI	CCNGG	1 cut(s)	359
BtsCI	GGATG	1 cut(s)	457
BtsIMutI	CAGTG	1 cut(s)	409
Cac8I	GCNNGC	1 cut(s)	566
CciI	TCATGA	1 cut(s)	151
CfoI	GCGC	2 cut(s)	102, 570
Cfr10I	RCCGGY	1 cut(s)	15
Cfr13I	GGNCC	1 cut(s)	504
CsiI	ACCWGGT	1 cut(s)	359
CviAII	CATG	4 cut(s)	152, 327, 368, 565
DdeI	CTNAG	3 cut(s)	254, 417, 516
DpnI	GATC	3 cut(s)	5, 150, 481
DpnII	GATC	3 cut(s)	3, 148, 479
DriI	GACNNNNNGTC	1 cut(s)	232
Eam1104I	CTCTTC	1 cut(s)	201
Eam1105I	GACNNNNNGTC	1 cut(s)	232
EarI	CTCTTC	1 cut(s)	201
Eco47I	GGWCC	1 cut(s)	504
EcoRII	CCWGG	1 cut(s)	359
EcoT22I	ATGCAT	1 cut(s)	566
FaeI	CATG	4 cut(s)	155, 330, 371, 568
FatI	CATG	4 cut(s)	151, 326, 367, 564
FblI	GTMKAC	1 cut(s)	236
FokI	GGATG	1 cut(s)	464
FspBI	CTAG	1 cut(s)	387
GlaI	GCGC	2 cut(s)	101, 569
GsaI	CCCAGC	1 cut(s)	70
HapII	CCGG	1 cut(s)	16
HhaI	GCGC	2 cut(s)	102, 570
Hin1II	CATG	4 cut(s)	155, 330, 371, 568
Hin6I	GCGC	2 cut(s)	100, 568
HinP1I	GCGC	2 cut(s)	100, 568
HinfI	GANTC	1 cut(s)	227
HpaII	CCGG	1 cut(s)	16
HphI	GGTGA	2 cut(s)	5, 532
Hpy166II	GTNNAC	1 cut(s)	237
Hpy188I	TCNGA	3 cut(s)	58, 221, 492
Hpy188III	TCNNGA	3 cut(s)	74, 152, 483
Hpy8I	GTNNAC	1 cut(s)	237
HpyAV	CCTTC	2 cut(s)	34, 367
HpyCH4III	ACNGT	2 cut(s)	316, 496
HpyCH4V	TGCA	2 cut(s)	559, 564
HpyF10VI	GCNNNNNNNGC	2 cut(s)	106, 565
HpyF3I	CTNAG	3 cut(s)	254, 417, 516
Hsp92II	CATG	4 cut(s)	155, 330, 371, 568
HspAI	GCGC	2 cut(s)	100, 568
Kzo9I	GATC	3 cut(s)	3, 148, 479
LmnI	GCTCC	3 cut(s)	313, 395, 430
MabI	ACCWGGT	1 cut(s)	359
MaeI	CTAG	1 cut(s)	387
MaeIII	GTNAC	2 cut(s)	353, 457
MalI	GATC	3 cut(s)	5, 150, 481
MboI	GATC	3 cut(s)	3, 148, 479
MboII	GAAGA	2 cut(s)	218, 560
MluCI	AATT	2 cut(s)	166, 411
MlyI	GAGTC	1 cut(s)	221
MmeI	TCCRAC	2 cut(s)	199, 335
MnlI	CCTC	3 cut(s)	81, 148, 202
Mph1103I	ATGCAT	1 cut(s)	566
MslI	CAYNNNNRTG	2 cut(s)	124, 559
MspI	CCGG	1 cut(s)	16
MspR9I	CCNGG	1 cut(s)	361
MvaI	CCWGG	1 cut(s)	361
MwoI	GCNNNNNNNGC	2 cut(s)	106, 565
NdeII	GATC	3 cut(s)	3, 148, 479
NlaIII	CATG	4 cut(s)	155, 330, 371, 568
NmuCI	GTSAC	1 cut(s)	457
NsiI	ATGCAT	1 cut(s)	566
NspI	RCATGY	2 cut(s)	330, 568
NspV	TTCGAA	1 cut(s)	523
PaeI	GCATGC	1 cut(s)	568
PagI	TCATGA	1 cut(s)	151
PciI	ACATGT	1 cut(s)	326
PleI	GAGTC	1 cut(s)	221
PpsI	GAGTC	1 cut(s)	221
PscI	ACATGT	1 cut(s)	326
Psp6I	CCWGG	1 cut(s)	359
PspFI	CCCAGC	1 cut(s)	66
PspGI	CCWGG	1 cut(s)	359
PspPI	GGNCC	1 cut(s)	504
RseI	CAYNNNNRTG	2 cut(s)	124, 559
Sau3AI	GATC	3 cut(s)	3, 148, 479
Sau96I	GGNCC	1 cut(s)	504
SchI	GAGTC	1 cut(s)	221
ScrFI	CCNGG	1 cut(s)	361
SetI	ASST	7 cut(s)	213, 310, 362, 392, 509, 517, 522
SexAI	ACCWGGT	1 cut(s)	359
SfuI	TTCGAA	1 cut(s)	523
SinI	GGWCC	1 cut(s)	504
SmiMI	CAYNNNNRTG	2 cut(s)	124, 559
SmlI	CTYRAG	1 cut(s)	74
SmoI	CTYRAG	1 cut(s)	74
SphI	GCATGC	1 cut(s)	568
Sse9I	AATT	2 cut(s)	166, 411
SspMI	CTAG	1 cut(s)	387
StyD4I	CCNGG	1 cut(s)	359
TaaI	ACNGT	2 cut(s)	316, 496
TaqI	TCGA	3 cut(s)	6, 297, 523
TasI	AATT	2 cut(s)	166, 411
TscAI	CASTG	1 cut(s)	409
TseFI	GTSAC	1 cut(s)	457
Tsp45I	GTSAC	1 cut(s)	457
TspDTI	ATGAA	4 cut(s)	219, 297, 356, 423
TspGWI	ACGGA	2 cut(s)	257, 517
TspRI	CASTG	1 cut(s)	409
VpaK11BI	GGWCC	1 cut(s)	504
XapI	RAATTY	2 cut(s)	166, 411
XceI	RCATGY	2 cut(s)	330, 568
XmiI	GTMKAC	1 cut(s)	236
XspI	CTAG	1 cut(s)	387
Zsp2I	ATGCAT	1 cut(s)	566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.