Rroxscaffold_7G00192090

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Reverse (-)
33149656 .. 33156907
7252 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_7G00192090.1

Sequence Viewer

Length: 153 bp
ATGGGTTTCCTCGTTGGGCGAGTTGTGCATATGTTCCTCGGTGCATTAATAGTTGTTGTTGGGCATGCCGGACAGCTAGATGTCGCCTTTGAAATCATACAGAAGCTAGAAATCGAGGAATACAAGTTGGAACCGTATCATATAGCTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

50

Amino Acids

5.63

Weight (kDa)

5.65

Isoelectric Point (pI)

36.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 1 cut(s) 92
AluBI AGCT 3 cut(s) 76, 106, 146
AluI AGCT 3 cut(s) 76, 106, 146
AseI ATTAAT 1 cut(s) 47
BfaI CTAG 2 cut(s) 77, 107
BmiI GGNNCC 1 cut(s) 132
BsaJI CCNNGG 1 cut(s) 37
BseDI CCNNGG 1 cut(s) 37
BsiSI CCGG 1 cut(s) 69
BspLI GGNNCC 1 cut(s) 132
BssECI CCNNGG 1 cut(s) 37
Bst4CI ACNGT 1 cut(s) 135
BstC8I GCNNGC 1 cut(s) 66
BstMWI GCNNNNNNNGC 1 cut(s) 25
BstNSI RCATGY 1 cut(s) 68
Cac8I GCNNGC 1 cut(s) 66
CviAII CATG 1 cut(s) 65
CviJI RGCY 3 cut(s) 76, 106, 146
CviKI_1 RGCY 3 cut(s) 76, 106, 146
FaeI CATG 1 cut(s) 68
FaiI YATR 6 cut(s) 30, 32, 66, 98, 141, 143
FatI CATG 1 cut(s) 64
FauNDI CATATG 1 cut(s) 30
FspBI CTAG 2 cut(s) 77, 107
HapII CCGG 1 cut(s) 69
Hin1II CATG 1 cut(s) 68
HpaII CCGG 1 cut(s) 69
HpyCH4III ACNGT 1 cut(s) 135
HpyCH4V TGCA 2 cut(s) 28, 44
HpyF10VI GCNNNNNNNGC 1 cut(s) 25
Hsp92II CATG 1 cut(s) 68
LpnPI CCDG 1 cut(s) 82
MaeI CTAG 2 cut(s) 77, 107
MmeI TCCRAC 1 cut(s) 108
MnlI CCTC 3 cut(s) 20, 47, 109
MseI TTAA 1 cut(s) 47
MspI CCGG 1 cut(s) 69
MwoI GCNNNNNNNGC 1 cut(s) 25
NdeI CATATG 1 cut(s) 30
NlaIII CATG 1 cut(s) 68
NlaIV GGNNCC 1 cut(s) 132
NspI RCATGY 1 cut(s) 68
PaeI GCATGC 1 cut(s) 68
PshBI ATTAAT 1 cut(s) 47
PspN4I GGNNCC 1 cut(s) 132
SaqAI TTAA 1 cut(s) 47
SetI ASST 3 cut(s) 78, 108, 148
SgeI CNNG 9 cut(s) 23, 32, 50, 77, 81, 89, 119, 127, 136
SphI GCATGC 1 cut(s) 68
SspMI CTAG 2 cut(s) 77, 107
TaaI ACNGT 1 cut(s) 135
TaqI TCGA 1 cut(s) 114
Tru1I TTAA 1 cut(s) 47
Tru9I TTAA 1 cut(s) 47
VspI ATTAAT 1 cut(s) 47
XceI RCATGY 1 cut(s) 68
XspI CTAG 2 cut(s) 77, 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.