Rh2AG437400

BAH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0006434
Physical Location & Seq
Reverse (-)
64804003 .. 64807458
3456 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG437400.1

Sequence Viewer

Length: 696 bp
ATGAAGAGAAGTTTTAAATACACACTCATAACTATTAGACCAGTCACTGGTGTCATTTATAGAGGGACTCTAAATGAGCCTGACAAAGCATCCAGATTTGTTGGACATCTAATGATCGACAATCACCGGCTTCAAAGCCAAAGTGAAAAGAAGGCATTATCAACATCAGACTTTGCCCAGCCTCTTGAGTATGATATGGCAATGGAATGGCGCATACAGCAGGAAAAGTCATATTTGTGTCGCAAGGCTTTATATAAGGATCATGAGGACTGGCTAAATTTGAAAGGCACAACAAACATCATCAATATCACAGATGAAGAGGTATTAGTCGGACTTGACTCAATGTCTACATTGTATGACAAACTAAGAAAGACAATCCGTGTGTTTTCAAATGAAAGGAGAAAGTTCGATGTGATAGCTCCAACAGTTAGAATGACATGTGTTGGTAATCTAAAGGAGTATCGTAACACCTGGTTTCATGTGAAGGGTCAAAAGCCTAGCTCCATTCTTATCAGTGATGAAATTTCTAAGGATAAGCAGGAGCGTAGCAGGGATAAACAGGATGTGGTCACTAATATAGTGGCAAAACGATCAGGACATCAGACAGTTGAACGGACCTTTAGAGCTGAGCTTCGAAAGTATAAAAATCTCACCCTTGAAGAAACATTGCAATGCATGCGCTATTCTTTACTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BAH RRM_1

Protein Analysis

231

Amino Acids

27.18

Weight (kDa)

9.53

Isoelectric Point (pI)

48.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 47
AccI GTMKAC 1 cut(s) 347
AclWI GGATC 1 cut(s) 267
AcsI RAATTY 2 cut(s) 277, 522
AfiI CCNNNNNNNGG 1 cut(s) 47
AflIII ACRYGT 1 cut(s) 437
AgsI TTSAA 5 cut(s) 134, 283, 390, 611, 659
AhdI GACNNNNNGTC 1 cut(s) 343
AjnI CCWGG 1 cut(s) 470
AluBI AGCT 4 cut(s) 419, 501, 626, 631
AluI AGCT 4 cut(s) 419, 501, 626, 631
AlwI GGATC 1 cut(s) 267
AlwNI CAGNNNCTG 1 cut(s) 47
ApoI RAATTY 2 cut(s) 277, 522
AspLEI GCGC 2 cut(s) 213, 681
AspS9I GGNCC 1 cut(s) 615
AsuHPI GGTGA 2 cut(s) 116, 643
AsuII TTCGAA 1 cut(s) 634
AvaII GGWCC 1 cut(s) 615
BciT130I CCWGG 1 cut(s) 472
BfaI CTAG 1 cut(s) 498
BlpI GCTNAGC 1 cut(s) 627
Bme1390I CCNGG 1 cut(s) 472
Bme18I GGWCC 1 cut(s) 615
BmeRI GACNNNNNGTC 1 cut(s) 343
BmgT120I GGNCC 1 cut(s) 615
BmrFI CCNGG 1 cut(s) 472
BmsI GCATC 1 cut(s) 98
Bpu1102I GCTNAGC 1 cut(s) 627
Bpu14I TTCGAA 1 cut(s) 634
BpuEI CTTGAG 1 cut(s) 206
Bsc4I CCNNNNNNNGG 1 cut(s) 47
Bse118I RCCGGY 1 cut(s) 126
Bse1I ACTGG 3 cut(s) 41, 52, 275
Bse3DI GCAATG 3 cut(s) 207, 665, 677
BseBI CCWGG 1 cut(s) 472
BseGI GGATG 2 cut(s) 89, 568
BseLI CCNNNNNNNGG 1 cut(s) 47
BseMI GCAATG 3 cut(s) 207, 665, 677
BseMII CTCAG 1 cut(s) 618
BseNI ACTGG 3 cut(s) 41, 52, 275
BseYI CCCAGC 1 cut(s) 177
BsiSI CCGG 1 cut(s) 127
BslFI GGGAC 1 cut(s) 79
BslI CCNNNNNNNGG 1 cut(s) 47
BsmFI GGGAC 1 cut(s) 79
Bsp119I TTCGAA 1 cut(s) 634
Bsp143I GATC 3 cut(s) 114, 259, 590
Bsp1720I GCTNAGC 1 cut(s) 627
BspCNI CTCAG 1 cut(s) 619
BspHI TCATGA 1 cut(s) 262
BspPI GGATC 1 cut(s) 267
BspT104I TTCGAA 1 cut(s) 634
BsrDI GCAATG 3 cut(s) 207, 665, 677
BsrFI RCCGGY 1 cut(s) 126
BsrI ACTGG 3 cut(s) 41, 52, 275
BssAI RCCGGY 1 cut(s) 126
BssMI GATC 3 cut(s) 114, 259, 590
Bst2UI CCWGG 1 cut(s) 472
Bst4CI ACNGT 2 cut(s) 427, 607
Bst6I CTCTTC 1 cut(s) 312
BstAPI GCANNNNNTGC 1 cut(s) 676
BstBI TTCGAA 1 cut(s) 634
BstC8I GCNNGC 1 cut(s) 677
BstDEI CTNAG 3 cut(s) 365, 528, 627
BstF5I GGATG 2 cut(s) 89, 568
BstHHI GCGC 2 cut(s) 213, 681
BstKTI GATC 3 cut(s) 117, 262, 593
BstMBI GATC 3 cut(s) 114, 259, 590
BstMWI GCNNNNNNNGC 2 cut(s) 217, 676
BstNI CCWGG 1 cut(s) 472
BstNSI RCATGY 2 cut(s) 441, 679
BstSCI CCNGG 1 cut(s) 470
BtsCI GGATG 2 cut(s) 89, 568
BtsIMutI CAGTG 2 cut(s) 45, 520
Cac8I GCNNGC 1 cut(s) 677
CaiI CAGNNNCTG 1 cut(s) 47
CciI TCATGA 1 cut(s) 262
CfoI GCGC 2 cut(s) 213, 681
Cfr10I RCCGGY 1 cut(s) 126
Cfr13I GGNCC 1 cut(s) 615
CsiI ACCWGGT 1 cut(s) 470
CviAII CATG 4 cut(s) 263, 438, 479, 676
DdeI CTNAG 3 cut(s) 365, 528, 627
DpnI GATC 3 cut(s) 116, 261, 592
DpnII GATC 3 cut(s) 114, 259, 590
DraI TTTAAA 1 cut(s) 16
DriI GACNNNNNGTC 1 cut(s) 343
Eam1104I CTCTTC 1 cut(s) 312
Eam1105I GACNNNNNGTC 1 cut(s) 343
EarI CTCTTC 1 cut(s) 312
Eco47I GGWCC 1 cut(s) 615
EcoRII CCWGG 1 cut(s) 470
EcoT22I ATGCAT 1 cut(s) 677
FaeI CATG 4 cut(s) 266, 441, 482, 679
FaqI GGGAC 1 cut(s) 79
FatI CATG 4 cut(s) 262, 437, 478, 675
FblI GTMKAC 1 cut(s) 347
FokI GGATG 2 cut(s) 76, 575
FspBI CTAG 1 cut(s) 498
GlaI GCGC 2 cut(s) 212, 680
GsaI CCCAGC 1 cut(s) 181
HapII CCGG 1 cut(s) 127
HhaI GCGC 2 cut(s) 213, 681
Hin1II CATG 4 cut(s) 266, 441, 482, 679
Hin6I GCGC 2 cut(s) 211, 679
HinP1I GCGC 2 cut(s) 211, 679
HinfI GANTC 2 cut(s) 67, 338
HpaII CCGG 1 cut(s) 127
HphI GGTGA 2 cut(s) 116, 643
Hpy166II GTNNAC 1 cut(s) 348
Hpy188I TCNGA 3 cut(s) 169, 332, 603
Hpy188III TCNNGA 4 cut(s) 93, 185, 263, 594
Hpy8I GTNNAC 1 cut(s) 348
HpyAV CCTTC 2 cut(s) 145, 478
HpyCH4III ACNGT 2 cut(s) 427, 607
HpyCH4V TGCA 2 cut(s) 670, 675
HpyF10VI GCNNNNNNNGC 2 cut(s) 217, 676
HpyF3I CTNAG 3 cut(s) 365, 528, 627
Hsp92II CATG 4 cut(s) 266, 441, 482, 679
HspAI GCGC 2 cut(s) 211, 679
Kzo9I GATC 3 cut(s) 114, 259, 590
LmnI GCTCC 3 cut(s) 424, 506, 541
LweI GCATC 1 cut(s) 98
MabI ACCWGGT 1 cut(s) 470
MaeI CTAG 1 cut(s) 498
MaeIII GTNAC 3 cut(s) 43, 464, 568
MalI GATC 3 cut(s) 116, 261, 592
MboI GATC 3 cut(s) 114, 259, 590
MboII GAAGA 3 cut(s) 16, 329, 671
MluCI AATT 2 cut(s) 277, 522
MlyI GAGTC 2 cut(s) 61, 332
MmeI TCCRAC 3 cut(s) 82, 310, 446
MnlI CCTC 4 cut(s) 56, 192, 259, 313
Mph1103I ATGCAT 1 cut(s) 677
MseI TTAA 1 cut(s) 15
MslI CAYNNNNRTG 2 cut(s) 235, 670
MspI CCGG 1 cut(s) 127
MspR9I CCNGG 1 cut(s) 472
MvaI CCWGG 1 cut(s) 472
MwoI GCNNNNNNNGC 2 cut(s) 217, 676
NdeII GATC 3 cut(s) 114, 259, 590
NlaIII CATG 4 cut(s) 266, 441, 482, 679
NmuCI GTSAC 2 cut(s) 43, 568
NsiI ATGCAT 1 cut(s) 677
NspI RCATGY 2 cut(s) 441, 679
NspV TTCGAA 1 cut(s) 634
PaeI GCATGC 1 cut(s) 679
PagI TCATGA 1 cut(s) 262
PciI ACATGT 1 cut(s) 437
PflMI CCANNNNNTGG 1 cut(s) 47
PleI GAGTC 2 cut(s) 61, 332
PpsI GAGTC 2 cut(s) 61, 332
PscI ACATGT 1 cut(s) 437
Psp6I CCWGG 1 cut(s) 470
PspFI CCCAGC 1 cut(s) 177
PspGI CCWGG 1 cut(s) 470
PspPI GGNCC 1 cut(s) 615
PstNI CAGNNNCTG 1 cut(s) 47
RseI CAYNNNNRTG 2 cut(s) 235, 670
SaqAI TTAA 1 cut(s) 15
Sau3AI GATC 3 cut(s) 114, 259, 590
Sau96I GGNCC 1 cut(s) 615
SchI GAGTC 2 cut(s) 61, 332
ScrFI CCNGG 1 cut(s) 472
SetI ASST 7 cut(s) 324, 421, 473, 503, 620, 628, 633
SexAI ACCWGGT 1 cut(s) 470
SfaNI GCATC 1 cut(s) 98
SfuI TTCGAA 1 cut(s) 634
SinI GGWCC 1 cut(s) 615
SmiMI CAYNNNNRTG 2 cut(s) 235, 670
SmlI CTYRAG 1 cut(s) 185
SmoI CTYRAG 1 cut(s) 185
SphI GCATGC 1 cut(s) 679
Sse9I AATT 2 cut(s) 277, 522
SspMI CTAG 1 cut(s) 498
StyD4I CCNGG 1 cut(s) 470
TaaI ACNGT 2 cut(s) 427, 607
TaqI TCGA 3 cut(s) 117, 408, 634
TasI AATT 2 cut(s) 277, 522
Tru1I TTAA 1 cut(s) 15
Tru9I TTAA 1 cut(s) 15
TscAI CASTG 2 cut(s) 52, 520
TseFI GTSAC 2 cut(s) 43, 568
Tsp45I GTSAC 2 cut(s) 43, 568
TspDTI ATGAA 5 cut(s) 17, 330, 408, 467, 534
TspGWI ACGGA 2 cut(s) 368, 628
TspRI CASTG 2 cut(s) 52, 520
Van91I CCANNNNNTGG 1 cut(s) 47
VpaK11BI GGWCC 1 cut(s) 615
XapI RAATTY 2 cut(s) 277, 522
XceI RCATGY 2 cut(s) 441, 679
XmiI GTMKAC 1 cut(s) 347
XspI CTAG 1 cut(s) 498
Zsp2I ATGCAT 1 cut(s) 677
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.