Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0006434

Physical Location & Seq

Genomic Coordinates Forward (+)

10522109 .. 10522679

Gene Structure 571 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0119300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGCTTGGCATGAGGAATATCTACAAGCTACTAGTTCTTCTCTCCCTGCAGTTCGAACCCGAGACAAACCTAGTAAGGTATGGGTTACGCCTGAGGATGGGAGCCATGCAGATTACTCATGCAACTTTGAGTGTGATTGTCTAGTGGCTGTCCAGGCTATTGCTTCTCAAACTCCTACCTTGTCTCCGTTATGTGCATTAATCACATATATCCAAGGGCTCCTAGCTAGAAGTGAGGGTTTTAAACTCCTCTATGTCCCTCGGCAAGCTAATGCAGTAGCTCATAGATTGACAAGTTTTAGTTTTGAATCCAATGTTCATCTTGAATGTTTTGTGACTGCTCCAGATTTTATTCTGGATGCCCTTATGTACGATTTCAATCGTATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010468 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0016070 GO:0016787 GO:0016788 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043487 GO:0043488 GO:0043489 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045934 GO:0046483 GO:0048255 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1902369 GO:1902373 GO:1903311 GO:1903312

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

129

Amino Acids

14.43

Weight (kDa)

5.19

Isoelectric Point (pI)

50.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	43 - 99	6.1e-06	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006434)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000010047 RLG00000020064 RLG00000028774
rosa_multiflora	Rmu_sc0001306.1_g000022 Rmu_sc0001438.1_g000035
rosa_roxburghii	Rroxscaffold_2G00101450 Rroxscaffold_7G00192090
rosa_rugosa	Rorug05G0119200 Rorug05G0119300 Rorug05G0119400 Rorug05G0119500 Rorug05G0119600 Rorug05G0119600 Rorug05G0119700 Rorug05G0119800 Rorug05G0119900 Rorug05G0120000
rosa_samantha	Rh2AG339800 Rh2AG437400 Rh2CG423700 Rh2DG357000 Rh2DG455400 Rh3CG365400 Rh6BG318500 Rh6CG026900 Rh7AG270000 Rh7CG289200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	371
AfiI	CCNNNNNNNGG	1 cut(s)	98
AgsI	TTSAA	3 cut(s)	308, 326, 379
AhlI	ACTAGT	1 cut(s)	32
AjnI	CCWGG	1 cut(s)	153
AluBI	AGCT	4 cut(s)	29, 227, 269, 281
AluI	AGCT	4 cut(s)	29, 227, 269, 281
Alw26I	GTCTC	2 cut(s)	57, 189
Ama87I	CYCGRG	1 cut(s)	60
AseI	ATTAAT	1 cut(s)	200
AsuII	TTCGAA	1 cut(s)	55
AvaI	CYCGRG	1 cut(s)	60
AxyI	CCTNAGG	1 cut(s)	93
BanII	GRGCYC	1 cut(s)	222
BccI	CCATC	1 cut(s)	92
BciT130I	CCWGG	1 cut(s)	155
BcoDI	GTCTC	2 cut(s)	57, 189
BcuI	ACTAGT	1 cut(s)	32
BfaI	CTAG	6 cut(s)	33, 72, 143, 224, 228, 388
BfmI	CTRYAG	1 cut(s)	48
Bme1390I	CCNGG	1 cut(s)	155
BmeT110I	CYCGRG	1 cut(s)	60
BmiI	GGNNCC	2 cut(s)	104, 221
BmrFI	CCNGG	1 cut(s)	155
BmsI	GCATC	1 cut(s)	349
BpmI	CTGGAG	1 cut(s)	327
Bpu14I	TTCGAA	1 cut(s)	55
BsaBI	GATNNNNATC	1 cut(s)	378
BsaJI	CCNNGG	2 cut(s)	214, 260
BsaXI	ACNNNNNCTCC	2 cut(s)	169, 199
Bsc4I	CCNNNNNNNGG	1 cut(s)	98
Bse21I	CCTNAGG	1 cut(s)	93
Bse8I	GATNNNNATC	1 cut(s)	378
BseBI	CCWGG	1 cut(s)	155
BseDI	CCNNGG	2 cut(s)	214, 260
BseGI	GGATG	2 cut(s)	103, 364
BseJI	GATNNNNATC	1 cut(s)	378
BseLI	CCNNNNNNNGG	1 cut(s)	98
BseMII	CTCAG	1 cut(s)	84
BseRI	GAGGAG	1 cut(s)	239
BsiHKCI	CYCGRG	1 cut(s)	60
BslFI	GGGAC	1 cut(s)	242
BslI	CCNNNNNNNGG	1 cut(s)	98
BsmAI	GTCTC	2 cut(s)	57, 189
BsmFI	GGGAC	1 cut(s)	242
BsoBI	CYCGRG	1 cut(s)	60
Bsp119I	TTCGAA	1 cut(s)	55
Bsp1286I	GDGCHC	1 cut(s)	222
BspCNI	CTCAG	1 cut(s)	85
BspLI	GGNNCC	2 cut(s)	104, 221
BspMAI	CTGCAG	1 cut(s)	52
BspT104I	TTCGAA	1 cut(s)	55
BssECI	CCNNGG	2 cut(s)	214, 260
BssT1I	CCWWGG	1 cut(s)	214
Bst2UI	CCWGG	1 cut(s)	155
BstBI	TTCGAA	1 cut(s)	55
BstC8I	GCNNGC	1 cut(s)	267
BstDEI	CTNAG	1 cut(s)	93
BstF5I	GGATG	2 cut(s)	103, 364
BstMAI	GTCTC	2 cut(s)	57, 189
BstMWI	GCNNNNNNNGC	1 cut(s)	155
BstNI	CCWGG	1 cut(s)	155
BstSCI	CCNGG	1 cut(s)	153
BstSFI	CTRYAG	1 cut(s)	48
Bsu36I	CCTNAGG	1 cut(s)	93
BtsCI	GGATG	2 cut(s)	103, 364
Cac8I	GCNNGC	1 cut(s)	267
Csp6I	GTAC	1 cut(s)	370
CviAII	CATG	3 cut(s)	11, 107, 120
CviJI	RGCY	9 cut(s)	5, 29, 105, 149, 158, 220, 227, 269, 281
CviKI_1	RGCY	9 cut(s)	5, 29, 105, 149, 158, 220, 227, 269, 281
CviQI	GTAC	1 cut(s)	370
DdeI	CTNAG	1 cut(s)	93
DraI	TTTAAA	1 cut(s)	244
Eco130I	CCWWGG	1 cut(s)	214
Eco24I	GRGCYC	1 cut(s)	222
Eco81I	CCTNAGG	1 cut(s)	93
Eco88I	CYCGRG	1 cut(s)	60
EcoRII	CCWGG	1 cut(s)	153
EcoT14I	CCWWGG	1 cut(s)	214
EcoT38I	GRGCYC	1 cut(s)	222
ErhI	CCWWGG	1 cut(s)	214
FaeI	CATG	3 cut(s)	14, 110, 123
FaqI	GGGAC	1 cut(s)	242
FatI	CATG	3 cut(s)	10, 106, 119
FokI	GGATG	2 cut(s)	110, 371
FriOI	GRGCYC	1 cut(s)	222
FspBI	CTAG	6 cut(s)	33, 72, 143, 224, 228, 388
GsuI	CTGGAG	1 cut(s)	327
Hin1II	CATG	3 cut(s)	14, 110, 123
HinfI	GANTC	1 cut(s)	308
Hpy188III	TCNNGA	3 cut(s)	323, 344, 356
HpyCH4V	TGCA	5 cut(s)	50, 110, 123, 197, 275
HpyF10VI	GCNNNNNNNGC	1 cut(s)	155
HpyF3I	CTNAG	1 cut(s)	93
Hsp92II	CATG	3 cut(s)	14, 110, 123
LmnI	GCTCC	3 cut(s)	102, 225, 346
LpnPI	CCDG	6 cut(s)	60, 105, 140, 167, 341, 357
LweI	GCATC	1 cut(s)	349
MaeI	CTAG	6 cut(s)	33, 72, 143, 224, 228, 388
MaeIII	GTNAC	2 cut(s)	85, 334
MboII	GAAGA	1 cut(s)	30
MhlI	GDGCHC	1 cut(s)	222
MnlI	CCTC	5 cut(s)	7, 88, 229, 260, 270
MseI	TTAA	2 cut(s)	200, 243
MspR9I	CCNGG	1 cut(s)	155
MvaI	CCWGG	1 cut(s)	155
MwoI	GCNNNNNNNGC	1 cut(s)	155
NlaIII	CATG	3 cut(s)	14, 110, 123
NlaIV	GGNNCC	2 cut(s)	104, 221
NmeAIII	GCCGAG	1 cut(s)	241
NmuCI	GTSAC	1 cut(s)	334
NspV	TTCGAA	1 cut(s)	55
PfeI	GAWTC	1 cut(s)	308
PshBI	ATTAAT	1 cut(s)	200
Psp6I	CCWGG	1 cut(s)	153
PspGI	CCWGG	1 cut(s)	153
PspN4I	GGNNCC	2 cut(s)	104, 221
PstI	CTGCAG	1 cut(s)	52
RsaI	GTAC	1 cut(s)	371
RsaNI	GTAC	1 cut(s)	370
SaqAI	TTAA	2 cut(s)	200, 243
ScrFI	CCNGG	1 cut(s)	155
SduI	GDGCHC	1 cut(s)	222
SetI	ASST	7 cut(s)	31, 73, 81, 182, 229, 271, 283
SfaNI	GCATC	1 cut(s)	349
SfcI	CTRYAG	1 cut(s)	48
SfuI	TTCGAA	1 cut(s)	55
SpeI	ACTAGT	1 cut(s)	32
SspMI	CTAG	6 cut(s)	33, 72, 143, 224, 228, 388
StyD4I	CCNGG	1 cut(s)	153
StyI	CCWWGG	1 cut(s)	214
TaqI	TCGA	1 cut(s)	55
TfiI	GAWTC	1 cut(s)	308
Tru1I	TTAA	2 cut(s)	200, 243
Tru9I	TTAA	2 cut(s)	200, 243
TseFI	GTSAC	1 cut(s)	334
Tsp45I	GTSAC	1 cut(s)	334
TspDTI	ATGAA	1 cut(s)	308
TspGWI	ACGGA	1 cut(s)	177
VspI	ATTAAT	1 cut(s)	200
XspI	CTAG	6 cut(s)	33, 72, 143, 224, 228, 388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.