Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0008315

Physical Location & Seq

Genomic Coordinates Reverse (-)

1970205 .. 1974734

Gene Structure 4530 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010475

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGGCTTGCTTACATGATCATAGCTGCGAAGAACATGATTGCTCCTCTGATTGGTCTCTCTACAAGCATATAGACCTCCCCAAGGTGTCTGCTTTAAATGAGGCAGTTCCAGGGAGTGTCAAGTCTGTGTTCAAAGCTTGGGAGGAACGGCTGAATTCATCTGGGGGACATCTGGAGAGCAATGAGGGTGATCCTGAATTGCTTATTTTCATTCCATTCACATCAGATGTGAAGATCAAGAGCATATCAATTGTGGGTGGTGTTGACGGAACAAGTCCTTCCAAGATGCGGGCGTTCATTAACCGAGAAGGCATTGACTTTTCAGATGCTCAAGGCATGCAAGCCATTCAGGAGTGGGATTTGGTTGAAAATTTCCAAGGAGTGTTGGAGTACCAGACTAGATATTCCAAATTTCAAAATGTGGGCAATATCACATTGCATTTCCCTGATAGTTTTGGTGGTGATACAACCAAGATTGAGTATATTGGGTTTAAAGGCGAAGCTACTCAGATAAAGAGGGATGTTGTTGCTACCATTGTTTATGAACTCAGGCCAAATCCTTCTGATCACAAAACAAAGGCTGAAGGTGGGGGTCTTTCACATGGTTTGAGCGTCCGCAATCTACTGCAAATCCAAAGGTTTTGGAACCATAAGATGGGCAAGAAGAGTAAATCTAAGACTCCTAAAGAGGTTAAAGAAGATAGTGTTGTAGAAAAGACTGTTGTGGAAGAAGAGAAACCTACATCTTCTGCAAAAAGGACTACTACTGCAAAGAAGCCTGCCTCTGTGATTGATGAGATATTCGCCGGGAAAAAGAGGAAGAAAGCTAAAGCCGAAGCCGAAAAGGCTAAAAAGAAAAATGAAGAGGCGAGTGAAAAACCCAACAAGCCTAAGAGAAAGAAGAAGAAAGATTTAGGCTTTGAAGACGGTGCATTTGTGGAGCCAAATTCTGGGTCAAAAAAGAGAACAAACGATGGCCTTGCTATCTATACAGAAGAAGAGTTGGGTATCAACAAAGCAGATGCTGGAAGCACCCCTCTTTGTCCATTTGATTGCTCTTGTTGCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PITH

Protein Analysis

357

Amino Acids

39.46

Weight (kDa)

8.02

Isoelectric Point (pI)

40.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PITH	PF06201	12 - 184	1.4e-53	PITH domain
DUF1764	PF08576	256 - 356	2.4e-26	Eukaryotic protein of unknown function (DUF1764)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008315)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25950 AT2G25950
fragaria_vesca	FvH4_2g32150
malus_domestica	MD08G1044700.v1.1 MD08G1045300.v1.1
prunus_persica	Prupe.1G414600_v2.0.a1
pyrus_communis	pycom08g03600 pycom15g05770
rosa_chinensis	RchiOBHm_Chr6g0310531
rosa_laevigata	RLG00000010475
rosa_multiflora	Rmu_sc0001801.1_g000025 Rmu_sc0016392.1_g000005 Rmu_sc0020729.1_g000002 Rmu_sc0035020.1_g000001
rosa_roxburghii	Rroxscaffold_7G00158450
rosa_rugosa	Rorug06G0381300
rosa_samantha	Rh1BG171900 Rh1BG221900 Rh6AG495200 Rh6BG504800 Rh6CG510100 Rh6DG496100
rosa_wichuraiana	Rw6G043070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	655, 950
AciI	CCGC	2 cut(s)	289, 616
AclWI	GGATC	1 cut(s)	185
AcsI	RAATTY	4 cut(s)	154, 370, 410, 946
AcuI	CTGAAG	1 cut(s)	603
AfaI	GTAC	1 cut(s)	392
AfiI	CCNNNNNNNGG	5 cut(s)	51, 82, 288, 655, 950
AgsI	TTSAA	4 cut(s)	133, 368, 416, 923
AjnI	CCWGG	1 cut(s)	109
AluBI	AGCT	4 cut(s)	24, 137, 503, 827
AluI	AGCT	4 cut(s)	24, 137, 503, 827
Alw26I	GTCTC	1 cut(s)	60
AlwI	GGATC	1 cut(s)	185
AlwNI	CAGNNNCTG	1 cut(s)	1025
AoxI	GGCC	2 cut(s)	551, 976
ApeKI	GCWGC	1 cut(s)	24
ApoI	RAATTY	4 cut(s)	154, 370, 410, 946
ArsI	GACNNNNNNTTYG	4 cut(s)	917, 938, 949, 970
AsuC2I	CCSGG	1 cut(s)	808
AsuHPI	GGTGA	2 cut(s)	200, 473
BbsI	GAAGAC	1 cut(s)	930
BbvI	GCAGC	1 cut(s)	11
BccI	CCATC	2 cut(s)	649, 968
BceAI	ACGGC	1 cut(s)	164
BcgI	CGANNNNNNTGC	2 cut(s)	962, 996
BciT130I	CCWGG	1 cut(s)	111
BclI	TGATCA	2 cut(s)	16, 565
BcnI	CCSGG	1 cut(s)	808
BcoDI	GTCTC	1 cut(s)	60
BfaI	CTAG	1 cut(s)	399
BglI	GCCNNNNNGGC	1 cut(s)	845
BisI	GCNGC	1 cut(s)	25
BlsI	GCNGC	1 cut(s)	26
Bme1390I	CCNGG	2 cut(s)	111, 808
BmiI	GGNNCC	2 cut(s)	647, 942
BmrFI	CCNGG	2 cut(s)	111, 808
BmsI	GCATC	3 cut(s)	276, 316, 1012
BpiI	GAAGAC	1 cut(s)	930
BpmI	CTGGAG	1 cut(s)	194
BpuEI	CTTGAG	1 cut(s)	315
BpuMI	CCSGG	1 cut(s)	808
BsaI	GGTCTC	1 cut(s)	60
BsaJI	CCNNGG	3 cut(s)	81, 110, 376
Bsc4I	CCNNNNNNNGG	5 cut(s)	51, 82, 288, 655, 950
Bse3DI	GCAATG	2 cut(s)	187, 434
BseBI	CCWGG	1 cut(s)	111
BseDI	CCNNGG	3 cut(s)	81, 110, 376
BseGI	GGATG	1 cut(s)	526
BseLI	CCNNNNNNNGG	5 cut(s)	51, 82, 288, 655, 950
BseMI	GCAATG	2 cut(s)	187, 434
BseMII	CTCAG	2 cut(s)	521, 562
BseRI	GAGGAG	1 cut(s)	34
BseXI	GCAGC	1 cut(s)	11
BshFI	GGCC	2 cut(s)	553, 978
BsiSI	CCGG	1 cut(s)	807
BslFI	GGGAC	1 cut(s)	180
BslI	CCNNNNNNNGG	5 cut(s)	51, 82, 288, 655, 950
BsmAI	GTCTC	1 cut(s)	60
BsmFI	GGGAC	1 cut(s)	180
BsnI	GGCC	2 cut(s)	553, 978
Bso31I	GGTCTC	1 cut(s)	60
Bsp143I	GATC	4 cut(s)	16, 190, 234, 565
BspACI	CCGC	2 cut(s)	289, 616
BspANI	GGCC	2 cut(s)	553, 978
BspCNI	CTCAG	2 cut(s)	520, 561
BspLI	GGNNCC	2 cut(s)	647, 942
BspPI	GGATC	1 cut(s)	185
BspTNI	GGTCTC	1 cut(s)	60
BsrDI	GCAATG	2 cut(s)	187, 434
BssECI	CCNNGG	3 cut(s)	81, 110, 376
BssMI	GATC	4 cut(s)	16, 190, 234, 565
BssT1I	CCWWGG	2 cut(s)	81, 376
Bst2UI	CCWGG	1 cut(s)	111
Bst4CI	ACNGT	2 cut(s)	721, 929
Bst6I	CTCTTC	4 cut(s)	659, 726, 858, 993
BstC8I	GCNNGC	5 cut(s)	7, 291, 338, 342, 780
BstDEI	CTNAG	4 cut(s)	507, 548, 675, 891
BstENI	CCTNNNNNAGG	1 cut(s)	80
BstF5I	GGATG	1 cut(s)	526
BstKTI	GATC	4 cut(s)	19, 193, 237, 568
BstMAI	GTCTC	1 cut(s)	60
BstMBI	GATC	4 cut(s)	16, 190, 234, 565
BstMWI	GCNNNNNNNGC	2 cut(s)	845, 1062
BstNI	CCWGG	1 cut(s)	111
BstNSI	RCATGY	1 cut(s)	340
BstSCI	CCNGG	2 cut(s)	109, 806
BstV1I	GCAGC	1 cut(s)	11
BstV2I	GAAGAC	1 cut(s)	930
BsuRI	GGCC	2 cut(s)	553, 978
BtsCI	GGATG	1 cut(s)	526
Cac8I	GCNNGC	5 cut(s)	7, 291, 338, 342, 780
CaiI	CAGNNNCTG	1 cut(s)	1025
CseI	GACGC	1 cut(s)	601
Csp6I	GTAC	1 cut(s)	391
CviAII	CATG	4 cut(s)	14, 35, 337, 602
CviQI	GTAC	1 cut(s)	391
DdeI	CTNAG	4 cut(s)	507, 548, 675, 891
DpnI	GATC	4 cut(s)	18, 192, 236, 567
DpnII	GATC	4 cut(s)	16, 190, 234, 565
DraI	TTTAAA	2 cut(s)	96, 493
Eam1104I	CTCTTC	4 cut(s)	659, 726, 858, 993
EarI	CTCTTC	4 cut(s)	659, 726, 858, 993
Eco130I	CCWWGG	2 cut(s)	81, 376
Eco31I	GGTCTC	1 cut(s)	60
Eco57I	CTGAAG	1 cut(s)	603
EcoNI	CCTNNNNNAGG	1 cut(s)	80
EcoRI	GAATTC	1 cut(s)	154
EcoRII	CCWGG	1 cut(s)	109
EcoT14I	CCWWGG	2 cut(s)	81, 376
ErhI	CCWWGG	2 cut(s)	81, 376
FaeI	CATG	4 cut(s)	17, 38, 340, 605
FaqI	GGGAC	1 cut(s)	180
FatI	CATG	4 cut(s)	13, 34, 336, 601
FauI	CCCGC	1 cut(s)	282
FbaI	TGATCA	2 cut(s)	16, 565
Fnu4HI	GCNGC	1 cut(s)	25
FokI	GGATG	1 cut(s)	533
Fsp4HI	GCNGC	1 cut(s)	25
FspBI	CTAG	1 cut(s)	399
GluI	GCNGC	1 cut(s)	25
GsuI	CTGGAG	1 cut(s)	194
HaeIII	GGCC	2 cut(s)	553, 978
HapII	CCGG	1 cut(s)	807
HgaI	GACGC	1 cut(s)	601
Hin1II	CATG	4 cut(s)	17, 38, 340, 605
HincII	GTYRAC	1 cut(s)	265
HindII	GTYRAC	1 cut(s)	265
HindIII	AAGCTT	1 cut(s)	135
HinfI	GANTC	1 cut(s)	679
HpaII	CCGG	1 cut(s)	807
HphI	GGTGA	2 cut(s)	200, 473
Hpy166II	GTNNAC	1 cut(s)	265
Hpy188I	TCNGA	6 cut(s)	49, 226, 325, 510, 565, 1070
Hpy188III	TCNNGA	4 cut(s)	173, 194, 238, 350
Hpy8I	GTNNAC	1 cut(s)	265
HpyAV	CCTTC	4 cut(s)	288, 302, 570, 578
HpyCH4III	ACNGT	2 cut(s)	721, 929
HpyCH4V	TGCA	6 cut(s)	340, 439, 628, 752, 770, 932
HpyF10VI	GCNNNNNNNGC	2 cut(s)	845, 1062
HpyF3I	CTNAG	4 cut(s)	507, 548, 675, 891
Hsp92II	CATG	4 cut(s)	17, 38, 340, 605
Ksp22I	TGATCA	2 cut(s)	16, 565
Kzo9I	GATC	4 cut(s)	16, 190, 234, 565
LmnI	GCTCC	2 cut(s)	47, 940
Lsp1109I	GCAGC	1 cut(s)	11
LweI	GCATC	3 cut(s)	276, 316, 1012
MaeI	CTAG	1 cut(s)	399
MalI	GATC	4 cut(s)	18, 192, 236, 567
MboI	GATC	4 cut(s)	16, 190, 234, 565
MfeI	CAATTG	1 cut(s)	249
MluCI	AATT	6 cut(s)	154, 197, 249, 370, 410, 946
MlyI	GAGTC	1 cut(s)	673
MmeI	TCCRAC	1 cut(s)	366
MseI	TTAA	4 cut(s)	95, 300, 492, 693
MspI	CCGG	1 cut(s)	807
MspR9I	CCNGG	2 cut(s)	111, 808
MunI	CAATTG	1 cut(s)	249
MvaI	CCWGG	1 cut(s)	111
MwoI	GCNNNNNNNGC	2 cut(s)	845, 1062
NciI	CCSGG	1 cut(s)	808
NdeII	GATC	4 cut(s)	16, 190, 234, 565
NlaIII	CATG	4 cut(s)	17, 38, 340, 605
NlaIV	GGNNCC	2 cut(s)	647, 942
NspI	RCATGY	1 cut(s)	340
PaeI	GCATGC	1 cut(s)	340
PflMI	CCANNNNNTGG	2 cut(s)	655, 950
PkrI	GCNGC	1 cut(s)	26
PleI	GAGTC	1 cut(s)	673
PpsI	GAGTC	1 cut(s)	673
Psp6I	CCWGG	1 cut(s)	109
PspGI	CCWGG	1 cut(s)	109
PspN4I	GGNNCC	2 cut(s)	647, 942
PstNI	CAGNNNCTG	1 cut(s)	1025
RsaI	GTAC	1 cut(s)	392
RsaNI	GTAC	1 cut(s)	391
SaqAI	TTAA	4 cut(s)	95, 300, 492, 693
SatI	GCNGC	1 cut(s)	25
Sau3AI	GATC	4 cut(s)	16, 190, 234, 565
SchI	GAGTC	1 cut(s)	673
ScrFI	CCNGG	2 cut(s)	111, 808
SfaNI	GCATC	3 cut(s)	276, 316, 1012
SmlI	CTYRAG	1 cut(s)	330
SmoI	CTYRAG	1 cut(s)	330
SphI	GCATGC	1 cut(s)	340
Sse9I	AATT	6 cut(s)	154, 197, 249, 370, 410, 946
SsiI	CCGC	2 cut(s)	289, 616
SspMI	CTAG	1 cut(s)	399
StyD4I	CCNGG	2 cut(s)	109, 806
StyI	CCWWGG	2 cut(s)	81, 376
TaaI	ACNGT	2 cut(s)	721, 929
TasI	AATT	6 cut(s)	154, 197, 249, 370, 410, 946
Tru1I	TTAA	4 cut(s)	95, 300, 492, 693
Tru9I	TTAA	4 cut(s)	95, 300, 492, 693
TseI	GCWGC	1 cut(s)	24
TspDTI	ATGAA	5 cut(s)	147, 199, 286, 558, 876
TspGWI	ACGGA	1 cut(s)	282
Van91I	CCANNNNNTGG	2 cut(s)	655, 950
XagI	CCTNNNNNAGG	1 cut(s)	80
XapI	RAATTY	4 cut(s)	154, 370, 410, 946
XceI	RCATGY	1 cut(s)	340
XspI	CTAG	1 cut(s)	399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.