Rmu_sc0001801.1_g000025

Belongs to the GRAS family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001801.1
OG0008315
Physical Location & Seq
Forward (+)
82855 .. 83232
378 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001801.1_g000025.1.cds

Sequence Viewer

Length: 378 bp
atggatccaacttacactggactccctgatttcatgcatgacattgatttcaatcccatgttacccaattcatctcaattcccagaaatcccaaatcagtaccgatttaaccagctctctccagatctcaactttttcagcaatcagttttcaattccacctgagccagattccggtaatcatgttcctccaattagtactgttagcacagagggaggttcaatttctgttcctaccactgttagccccggagtagattctctgtcctctgatgatattgacttctctgaaactggacgccaacctggacgcctttgtcaacgacttgctcaacattctcgacgctgtgggagtcaaaaggtgcgaatccagagttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GRAS

Protein Analysis

125

Amino Acids

13.81

Weight (kDa)

4.73

Isoelectric Point (pI)

47.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 315
AclWI GGATC 1 cut(s) 12
AcyI GRCGYC 2 cut(s) 298, 310
AfaI GTAC 2 cut(s) 101, 199
AfiI CCNNNNNNNGG 1 cut(s) 173
AgsI TTSAA 3 cut(s) 52, 153, 222
AjnI CCWGG 1 cut(s) 304
AluBI AGCT 1 cut(s) 115
AluI AGCT 1 cut(s) 115
AlwI GGATC 1 cut(s) 12
AsuC2I CCSGG 1 cut(s) 249
BamHI GGATCC 1 cut(s) 4
BciT130I CCWGG 1 cut(s) 306
BcnI CCSGG 1 cut(s) 249
BglII AGATCT 1 cut(s) 124
BmcAI AGTACT 1 cut(s) 199
Bme1390I CCNGG 2 cut(s) 249, 306
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 2 cut(s) 249, 306
BpmI CTGGAG 1 cut(s) 105
Bpu10I CCTNAGC 1 cut(s) 162
BpuMI CCSGG 1 cut(s) 249
BsaBI GATNNNNATC 1 cut(s) 51
BsaHI GRCGYC 2 cut(s) 298, 310
BsaJI CCNNGG 1 cut(s) 247
BsaWI WCCGGW 1 cut(s) 173
Bsc4I CCNNNNNNNGG 1 cut(s) 173
Bse1I ACTGG 2 cut(s) 22, 298
Bse8I GATNNNNATC 1 cut(s) 51
BseBI CCWGG 1 cut(s) 306
BseDI CCNNGG 1 cut(s) 247
BseJI GATNNNNATC 1 cut(s) 51
BseLI CCNNNNNNNGG 1 cut(s) 173
BseMII CTCAG 1 cut(s) 153
BseNI ACTGG 2 cut(s) 22, 298
BsiSI CCGG 2 cut(s) 174, 249
BslI CCNNNNNNNGG 1 cut(s) 173
Bsp143I GATC 2 cut(s) 4, 124
BspCNI CTCAG 1 cut(s) 154
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 1 cut(s) 12
BsrI ACTGG 2 cut(s) 22, 298
BssECI CCNNGG 1 cut(s) 247
BssMI GATC 2 cut(s) 4, 124
BssNI GRCGYC 2 cut(s) 298, 310
Bst2UI CCWGG 1 cut(s) 306
Bst4CI ACNGT 2 cut(s) 202, 241
BstACI GRCGYC 2 cut(s) 298, 310
BstDEI CTNAG 1 cut(s) 162
BstKTI GATC 2 cut(s) 7, 127
BstMBI GATC 2 cut(s) 4, 124
BstNI CCWGG 1 cut(s) 306
BstSCI CCNGG 2 cut(s) 247, 304
BstX2I RGATCY 2 cut(s) 4, 124
BstYI RGATCY 2 cut(s) 4, 124
BtsIMutI CAGTG 2 cut(s) 15, 237
CseI GACGC 3 cut(s) 306, 318, 351
Csp6I GTAC 2 cut(s) 100, 198
CviAII CATG 4 cut(s) 34, 38, 58, 182
CviJI RGCY 3 cut(s) 115, 166, 246
CviKI_1 RGCY 3 cut(s) 115, 166, 246
CviQI GTAC 2 cut(s) 100, 198
DdeI CTNAG 1 cut(s) 162
DpnI GATC 2 cut(s) 6, 126
DpnII GATC 2 cut(s) 4, 124
DrdI GACNNNNNNGTC 1 cut(s) 315
DseDI GACNNNNNNGTC 1 cut(s) 315
EcoRII CCWGG 1 cut(s) 304
EcoT22I ATGCAT 1 cut(s) 39
FaeI CATG 4 cut(s) 37, 41, 61, 185
FaiI YATR 4 cut(s) 35, 39, 59, 183
FatI CATG 4 cut(s) 33, 37, 57, 181
GsuI CTGGAG 1 cut(s) 105
HapII CCGG 2 cut(s) 174, 249
HgaI GACGC 3 cut(s) 306, 318, 351
Hin1I GRCGYC 2 cut(s) 298, 310
Hin1II CATG 4 cut(s) 37, 41, 61, 185
HincII GTYRAC 1 cut(s) 320
HindII GTYRAC 1 cut(s) 320
HinfI GANTC 5 cut(s) 21, 170, 257, 352, 366
HpaII CCGG 2 cut(s) 174, 249
Hpy166II GTNNAC 1 cut(s) 320
Hpy188I TCNGA 2 cut(s) 271, 289
Hpy188III TCNNGA 3 cut(s) 122, 339, 370
Hpy8I GTNNAC 1 cut(s) 320
Hpy99I CGWCG 1 cut(s) 345
HpyCH4III ACNGT 2 cut(s) 202, 241
HpyCH4V TGCA 1 cut(s) 37
HpyF3I CTNAG 1 cut(s) 162
Hsp92I GRCGYC 2 cut(s) 298, 310
Hsp92II CATG 4 cut(s) 37, 41, 61, 185
Kzo9I GATC 2 cut(s) 4, 124
MaeIII GTNAC 1 cut(s) 60
MalI GATC 2 cut(s) 6, 126
MboI GATC 2 cut(s) 4, 124
MflI RGATCY 2 cut(s) 4, 124
MluCI AATT 5 cut(s) 67, 77, 153, 192, 222
MlyI GAGTC 2 cut(s) 15, 361
MmeI TCCRAC 1 cut(s) 32
MnlI CCTC 4 cut(s) 198, 205, 209, 277
Mph1103I ATGCAT 1 cut(s) 39
MseI TTAA 2 cut(s) 108, 376
MspI CCGG 2 cut(s) 174, 249
MspR9I CCNGG 2 cut(s) 249, 306
MvaI CCWGG 1 cut(s) 306
NciI CCSGG 1 cut(s) 249
NdeII GATC 2 cut(s) 4, 124
NlaIII CATG 4 cut(s) 37, 41, 61, 185
NlaIV GGNNCC 1 cut(s) 6
NsiI ATGCAT 1 cut(s) 39
PfeI GAWTC 3 cut(s) 170, 257, 366
PleI GAGTC 2 cut(s) 15, 360
PpsI GAGTC 2 cut(s) 15, 360
Psp6I CCWGG 1 cut(s) 304
PspGI CCWGG 1 cut(s) 304
PspN4I GGNNCC 1 cut(s) 6
PsuI RGATCY 2 cut(s) 4, 124
RsaI GTAC 2 cut(s) 101, 199
RsaNI GTAC 2 cut(s) 100, 198
SaqAI TTAA 2 cut(s) 108, 376
Sau3AI GATC 2 cut(s) 4, 124
ScaI AGTACT 1 cut(s) 199
SchI GAGTC 2 cut(s) 15, 361
ScrFI CCNGG 2 cut(s) 249, 306
SetI ASST 5 cut(s) 117, 163, 220, 307, 363
Sse9I AATT 5 cut(s) 67, 77, 153, 192, 222
StyD4I CCNGG 2 cut(s) 247, 304
TaaI ACNGT 2 cut(s) 202, 241
TaqI TCGA 1 cut(s) 340
TasI AATT 5 cut(s) 67, 77, 153, 192, 222
TatI WGTACW 1 cut(s) 197
TfiI GAWTC 3 cut(s) 170, 257, 366
Tru1I TTAA 2 cut(s) 108, 376
Tru9I TTAA 2 cut(s) 108, 376
TscAI CASTG 2 cut(s) 22, 244
TspDTI ATGAA 2 cut(s) 22, 60
TspRI CASTG 2 cut(s) 22, 244
ZrmI AGTACT 1 cut(s) 199
Zsp2I ATGCAT 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.