Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016392.1

Orthogroup ID

OG0008315

Physical Location & Seq

Genomic Coordinates Reverse (-)

18644 .. 21414

Gene Structure 2771 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016392.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

atgatcatagctgcgaagaacatgattgctcctctgattgttccaggcagtgtcaagtccgtgttcaaagcttgggaggaacggctgaattcatctgggggacatctggagagcaatgagggtgatcctgaattacttattttcattccattcacatcagatgtgaagatcaagagcatatcaattgtgggtggtgttgacggaacaagtccttccaagatgagggcgttcattaaccgagaaggcattgacttctcagatgctcaaggcatgcaagccattcaggagtgggatttggttgaaaatttccaaggagtgttggagtaccagacaagatattccaaatttcaaaatgtgggcagtatcacgttgcatttccctgatagttttggtggtgatacaaccaagattgagtatattggctttaaaggtgaagctactcagttaaagagggatgttgttgctaccatagtttatgaactcaggccaaatccttctgatcacaaaacaaaggctgaaggtgggggtctttcacatgtcgaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PITH

Protein Analysis

181

Amino Acids

19.88

Weight (kDa)

5.27

Isoelectric Point (pI)

23.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008315)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25950 AT2G25950
fragaria_vesca	FvH4_2g32150
malus_domestica	MD08G1044700.v1.1 MD08G1045300.v1.1
prunus_persica	Prupe.1G414600_v2.0.a1
pyrus_communis	pycom08g03600 pycom15g05770
rosa_chinensis	RchiOBHm_Chr6g0310531
rosa_laevigata	RLG00000010475
rosa_multiflora	Rmu_sc0001801.1_g000025 Rmu_sc0016392.1_g000005 Rmu_sc0020729.1_g000002 Rmu_sc0035020.1_g000001
rosa_roxburghii	Rroxscaffold_7G00158450
rosa_rugosa	Rorug06G0381300
rosa_samantha	Rh1BG171900 Rh1BG221900 Rh6AG495200 Rh6BG504800 Rh6CG510100 Rh6DG496100
rosa_wichuraiana	Rw6G043070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	119
AcsI	RAATTY	3 cut(s)	88, 304, 344
AcuI	CTGAAG	1 cut(s)	537
AfaI	GTAC	1 cut(s)	326
AfiI	CCNNNNNNNGG	1 cut(s)	222
AflIII	ACRYGT	1 cut(s)	535
AgsI	TTSAA	3 cut(s)	67, 302, 350
AjnI	CCWGG	1 cut(s)	43
AluBI	AGCT	3 cut(s)	11, 71, 437
AluI	AGCT	3 cut(s)	11, 71, 437
AlwI	GGATC	1 cut(s)	119
AoxI	GGCC	1 cut(s)	485
ApeKI	GCWGC	1 cut(s)	11
ApoI	RAATTY	3 cut(s)	88, 304, 344
AsuHPI	GGTGA	3 cut(s)	134, 407, 443
BceAI	ACGGC	1 cut(s)	98
BciT130I	CCWGG	1 cut(s)	45
BclI	TGATCA	2 cut(s)	3, 499
BisI	GCNGC	1 cut(s)	12
BlsI	GCNGC	1 cut(s)	13
Bme1390I	CCNGG	1 cut(s)	45
BmrFI	CCNGG	1 cut(s)	45
BmsI	GCATC	1 cut(s)	250
BpmI	CTGGAG	1 cut(s)	128
BpuEI	CTTGAG	1 cut(s)	249
BsaJI	CCNNGG	1 cut(s)	310
Bsc4I	CCNNNNNNNGG	1 cut(s)	222
Bse3DI	GCAATG	1 cut(s)	121
BseBI	CCWGG	1 cut(s)	45
BseDI	CCNNGG	1 cut(s)	310
BseGI	GGATG	1 cut(s)	460
BseLI	CCNNNNNNNGG	1 cut(s)	222
BseMI	GCAATG	1 cut(s)	121
BseMII	CTCAG	3 cut(s)	270, 455, 496
BseRI	GAGGAG	1 cut(s)	21
BshFI	GGCC	1 cut(s)	487
BslFI	GGGAC	1 cut(s)	114
BslI	CCNNNNNNNGG	1 cut(s)	222
BsmFI	GGGAC	1 cut(s)	114
BsnI	GGCC	1 cut(s)	487
Bsp143I	GATC	4 cut(s)	3, 124, 168, 499
BspANI	GGCC	1 cut(s)	487
BspCNI	CTCAG	3 cut(s)	269, 454, 495
BspPI	GGATC	1 cut(s)	119
BsrDI	GCAATG	1 cut(s)	121
BssECI	CCNNGG	1 cut(s)	310
BssMI	GATC	4 cut(s)	3, 124, 168, 499
BssT1I	CCWWGG	1 cut(s)	310
Bst2UI	CCWGG	1 cut(s)	45
BstC8I	GCNNGC	2 cut(s)	272, 276
BstDEI	CTNAG	3 cut(s)	256, 441, 482
BstF5I	GGATG	1 cut(s)	460
BstKTI	GATC	4 cut(s)	6, 127, 171, 502
BstMBI	GATC	4 cut(s)	3, 124, 168, 499
BstNI	CCWGG	1 cut(s)	45
BstNSI	RCATGY	2 cut(s)	274, 539
BstSCI	CCNGG	1 cut(s)	43
BsuRI	GGCC	1 cut(s)	487
BtsCI	GGATG	1 cut(s)	460
BtsI	GCAGTG	1 cut(s)	55
BtsIMutI	CAGTG	1 cut(s)	55
Cac8I	GCNNGC	2 cut(s)	272, 276
Csp6I	GTAC	1 cut(s)	325
CviAII	CATG	3 cut(s)	22, 271, 536
CviJI	RGCY	8 cut(s)	11, 71, 85, 278, 423, 437, 487, 515
CviKI_1	RGCY	8 cut(s)	11, 71, 85, 278, 423, 437, 487, 515
CviQI	GTAC	1 cut(s)	325
DdeI	CTNAG	3 cut(s)	256, 441, 482
DpnI	GATC	4 cut(s)	5, 126, 170, 501
DpnII	GATC	4 cut(s)	3, 124, 168, 499
DraI	TTTAAA	1 cut(s)	427
Eco130I	CCWWGG	1 cut(s)	310
Eco57I	CTGAAG	1 cut(s)	537
EcoRI	GAATTC	1 cut(s)	88
EcoRII	CCWGG	1 cut(s)	43
EcoT14I	CCWWGG	1 cut(s)	310
ErhI	CCWWGG	1 cut(s)	310
FaeI	CATG	3 cut(s)	25, 274, 539
FaiI	YATR	8 cut(s)	8, 23, 179, 272, 417, 470, 477, 537
FaqI	GGGAC	1 cut(s)	114
FatI	CATG	3 cut(s)	21, 270, 535
FbaI	TGATCA	2 cut(s)	3, 499
Fnu4HI	GCNGC	1 cut(s)	12
FokI	GGATG	1 cut(s)	467
Fsp4HI	GCNGC	1 cut(s)	12
GluI	GCNGC	1 cut(s)	12
GsuI	CTGGAG	1 cut(s)	128
HaeIII	GGCC	1 cut(s)	487
Hin1II	CATG	3 cut(s)	25, 274, 539
HincII	GTYRAC	1 cut(s)	199
HindII	GTYRAC	1 cut(s)	199
HindIII	AAGCTT	1 cut(s)	69
HphI	GGTGA	3 cut(s)	134, 407, 443
Hpy166II	GTNNAC	1 cut(s)	199
Hpy188I	TCNGA	4 cut(s)	36, 160, 259, 499
Hpy188III	TCNNGA	4 cut(s)	107, 128, 172, 284
Hpy8I	GTNNAC	1 cut(s)	199
HpyAV	CCTTC	4 cut(s)	222, 236, 504, 512
HpyCH4IV	ACGT	1 cut(s)	368
HpyCH4V	TGCA	2 cut(s)	274, 373
HpyF3I	CTNAG	3 cut(s)	256, 441, 482
HpySE526I	ACGT	1 cut(s)	368
Hsp92II	CATG	3 cut(s)	25, 274, 539
Ksp22I	TGATCA	2 cut(s)	3, 499
Kzo9I	GATC	4 cut(s)	3, 124, 168, 499
LmnI	GCTCC	1 cut(s)	34
LpnPI	CCDG	9 cut(s)	30, 57, 81, 92, 141, 269, 341, 393, 469
LweI	GCATC	1 cut(s)	250
MaeII	ACGT	1 cut(s)	368
MalI	GATC	4 cut(s)	5, 126, 170, 501
MboI	GATC	4 cut(s)	3, 124, 168, 499
MboII	GAAGA	2 cut(s)	28, 178
MfeI	CAATTG	1 cut(s)	183
MluCI	AATT	5 cut(s)	88, 131, 183, 304, 344
MmeI	TCCRAC	1 cut(s)	300
MnlI	CCTC	5 cut(s)	42, 70, 112, 216, 444
MseI	TTAA	3 cut(s)	234, 426, 446
MspR9I	CCNGG	1 cut(s)	45
MunI	CAATTG	1 cut(s)	183
MvaI	CCWGG	1 cut(s)	45
NdeII	GATC	4 cut(s)	3, 124, 168, 499
NlaIII	CATG	3 cut(s)	25, 274, 539
NspI	RCATGY	2 cut(s)	274, 539
PaeI	GCATGC	1 cut(s)	274
PciI	ACATGT	1 cut(s)	535
PkrI	GCNGC	1 cut(s)	13
PscI	ACATGT	1 cut(s)	535
Psp6I	CCWGG	1 cut(s)	43
PspGI	CCWGG	1 cut(s)	43
RsaI	GTAC	1 cut(s)	326
RsaNI	GTAC	1 cut(s)	325
SaqAI	TTAA	3 cut(s)	234, 426, 446
SatI	GCNGC	1 cut(s)	12
Sau3AI	GATC	4 cut(s)	3, 124, 168, 499
ScrFI	CCNGG	1 cut(s)	45
SetI	ASST	6 cut(s)	13, 73, 371, 433, 439, 523
SfaNI	GCATC	1 cut(s)	250
SmlI	CTYRAG	1 cut(s)	264
SmoI	CTYRAG	1 cut(s)	264
SphI	GCATGC	1 cut(s)	274
Sse9I	AATT	5 cut(s)	88, 131, 183, 304, 344
StyD4I	CCNGG	1 cut(s)	43
StyI	CCWWGG	1 cut(s)	310
TaiI	ACGT	1 cut(s)	371
TaqI	TCGA	1 cut(s)	540
TasI	AATT	5 cut(s)	88, 131, 183, 304, 344
Tru1I	TTAA	3 cut(s)	234, 426, 446
Tru9I	TTAA	3 cut(s)	234, 426, 446
TscAI	CASTG	1 cut(s)	55
TseI	GCWGC	1 cut(s)	11
TspDTI	ATGAA	4 cut(s)	81, 133, 220, 492
TspGWI	ACGGA	2 cut(s)	49, 216
TspRI	CASTG	1 cut(s)	55
XapI	RAATTY	3 cut(s)	88, 304, 344
XceI	RCATGY	2 cut(s)	274, 539

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.