Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0015760

Physical Location & Seq

Genomic Coordinates Reverse (-)

15184565 .. 15187653

Gene Structure 3089 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012092

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGACAGAGGCTGCTTGTTGTATGAATGTGATGAATAGAGGAATCAGAGCACTAGTGAAAGCCATTCACTCTACTCCCACGCAGTTCGTTCTCTATCTCTCCTGCAGAGCCTCTCAGAGCCGCAAGTACAGACTTGGAAATTGTAGTGCCTTATTCCCAAATGTCTATGATCCAATTACTCTCCCCAATTTAGTCTGTCTTCTCATTGTAAGGCTGACCAAAACCATATCGAAAGAAAACAAGTGCCAGTTTTTGGTGTGGAAGGAAGGGACTCATTCGTTTTCCATAGGAGTCACAGAAGTCATTAATACAAATCTCTTGATAGAACTAAGTGCTGATGACGTAGATTATGTCTACCAAAGGAGTCCTGGGAAAATCTTAAGCATAAATATCCCAACATTTGAGGCCCTTACTCAATTTGGAACTGCTACAATCACAGCAAAGAATACTGGTGAAGTGGAAACATCATATTGCTTAACAGAGCAATACTTCATTATGAAGCCAAAAGAAACGTTAACTCAATCATTCAAACTTTACCCAGGAACCGATCAAGCTGCAAAATACATCTGTGCAGCTATACTTAAGGACTCTAATTATAATGAAGTGGATAGAGCCGAGTGCCAATTTTCTACGATGTCTACTGTCATTGATAATGGATCACAGGCATTGCTCTTTGCCATCGTTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005887 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009566 GO:0009567 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0019953 GO:0022412 GO:0022414 GO:0030154 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0044703 GO:0045026 GO:0048229 GO:0048232 GO:0048235 GO:0048609 GO:0048856 GO:0048869 GO:0051704 GO:0055046 GO:0061024 GO:0061025 GO:0061936 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAP2-GCS1

Protein Analysis

230

Amino Acids

25.53

Weight (kDa)

7.47

Isoelectric Point (pI)

29.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAP2-GCS1	PF10699	81 - 222	1.8e-36	Male gamete fusion factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0015760)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0036251
rosa_laevigata	RLG00000012092 RLG00000033373 RLG00000034843
rosa_roxburghii	Rroxscaffold_1G00008550 Rroxscaffold_1G00033210 Rroxscaffold_1G00033710 Rroxscaffold_1G00061800 Rroxscaffold_2G00110640 Rroxscaffold_2G00117290 Rroxscaffold_4G00286660 Rroxscaffold_4G00305950 Rroxscaffold_5G00345320 Rroxscaffold_5G00353480
rosa_samantha	Rh1DG239400 Rh7CG119800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	597
AccB7I	CCANNNNNTGG	1 cut(s)	253
AccI	GTMKAC	2 cut(s)	354, 638
AciI	CCGC	1 cut(s)	121
AclI	AACGTT	1 cut(s)	512
AclWI	GGATC	2 cut(s)	164, 664
AfaI	GTAC	1 cut(s)	128
AfiI	CCNNNNNNNGG	1 cut(s)	253
AflII	CTTAAG	2 cut(s)	379, 581
AgsI	TTSAA	1 cut(s)	529
AhlI	ACTAGT	1 cut(s)	52
AjnI	CCWGG	2 cut(s)	367, 538
AluBI	AGCT	2 cut(s)	554, 575
AluI	AGCT	2 cut(s)	554, 575
Alw21I	GWGCWC	1 cut(s)	52
AlwI	GGATC	2 cut(s)	164, 664
AlwNI	CAGNNNCTG	1 cut(s)	11
AoxI	GGCC	1 cut(s)	405
ApeKI	GCWGC	3 cut(s)	11, 554, 572
AseI	ATTAAT	1 cut(s)	306
AspS9I	GGNCC	1 cut(s)	406
AsuHPI	GGTGA	1 cut(s)	464
BbsI	GAAGAC	1 cut(s)	191
Bbv12I	GWGCWC	1 cut(s)	52
BbvI	GCAGC	2 cut(s)	541, 584
BccI	CCATC	1 cut(s)	686
BcgI	CGANNNNNNTGC	2 cut(s)	536, 570
BciT130I	CCWGG	2 cut(s)	369, 540
BcuI	ACTAGT	1 cut(s)	52
BfaI	CTAG	1 cut(s)	53
BfmI	CTRYAG	1 cut(s)	103
BfrI	CTTAAG	2 cut(s)	379, 581
BisI	GCNGC	4 cut(s)	12, 121, 555, 573
BlsI	GCNGC	4 cut(s)	13, 122, 556, 574
Bme1390I	CCNGG	2 cut(s)	369, 540
BmgT120I	GGNCC	1 cut(s)	406
BmiI	GGNNCC	1 cut(s)	544
BmrFI	CCNGG	2 cut(s)	369, 540
BpiI	GAAGAC	1 cut(s)	191
BsaJI	CCNNGG	2 cut(s)	368, 538
Bsc4I	CCNNNNNNNGG	1 cut(s)	253
Bse1I	ACTGG	2 cut(s)	247, 454
Bse3DI	GCAATG	1 cut(s)	665
BseBI	CCWGG	2 cut(s)	369, 540
BseDI	CCNNGG	2 cut(s)	368, 538
BseLI	CCNNNNNNNGG	1 cut(s)	253
BseMI	GCAATG	1 cut(s)	665
BseMII	CTCAG	1 cut(s)	128
BseNI	ACTGG	2 cut(s)	247, 454
BseXI	GCAGC	2 cut(s)	541, 584
BsgI	GTGCAG	1 cut(s)	591
BshFI	GGCC	1 cut(s)	407
BsiHKAI	GWGCWC	1 cut(s)	52
BslFI	GGGAC	1 cut(s)	283
BslI	CCNNNNNNNGG	1 cut(s)	253
BsmFI	GGGAC	1 cut(s)	283
BsnI	GGCC	1 cut(s)	407
Bsp1286I	GDGCHC	1 cut(s)	52
Bsp143I	GATC	3 cut(s)	169, 547, 656
BspACI	CCGC	1 cut(s)	121
BspANI	GGCC	1 cut(s)	407
BspCNI	CTCAG	1 cut(s)	127
BspLI	GGNNCC	1 cut(s)	544
BspMAI	CTGCAG	1 cut(s)	107
BspPI	GGATC	2 cut(s)	164, 664
BspTI	CTTAAG	2 cut(s)	379, 581
BsrDI	GCAATG	1 cut(s)	665
BsrI	ACTGG	2 cut(s)	247, 454
BssECI	CCNNGG	2 cut(s)	368, 538
BssMI	GATC	3 cut(s)	169, 547, 656
Bst2UI	CCWGG	2 cut(s)	369, 540
Bst4CI	ACNGT	1 cut(s)	643
BstAFI	CTTAAG	2 cut(s)	379, 581
BstDEI	CTNAG	2 cut(s)	114, 329
BstKTI	GATC	3 cut(s)	172, 550, 659
BstMBI	GATC	3 cut(s)	169, 547, 656
BstNI	CCWGG	2 cut(s)	369, 540
BstSCI	CCNGG	2 cut(s)	367, 538
BstSFI	CTRYAG	1 cut(s)	103
BstV1I	GCAGC	2 cut(s)	541, 584
BstV2I	GAAGAC	1 cut(s)	191
BsuRI	GGCC	1 cut(s)	407
CaiI	CAGNNNCTG	1 cut(s)	11
Cfr13I	GGNCC	1 cut(s)	406
Csp6I	GTAC	1 cut(s)	127
CviQI	GTAC	1 cut(s)	127
DdeI	CTNAG	2 cut(s)	114, 329
DpnI	GATC	3 cut(s)	171, 549, 658
DpnII	GATC	3 cut(s)	169, 547, 656
EcoO109I	RGGNCCY	1 cut(s)	406
EcoRII	CCWGG	2 cut(s)	367, 538
FaqI	GGGAC	1 cut(s)	283
FblI	GTMKAC	2 cut(s)	354, 638
Fnu4HI	GCNGC	4 cut(s)	12, 121, 555, 573
Fsp4HI	GCNGC	4 cut(s)	12, 121, 555, 573
FspBI	CTAG	1 cut(s)	53
GluI	GCNGC	4 cut(s)	12, 121, 555, 573
HaeIII	GGCC	1 cut(s)	407
HincII	GTYRAC	1 cut(s)	516
HindII	GTYRAC	1 cut(s)	516
HinfI	GANTC	5 cut(s)	42, 271, 291, 364, 587
HpaI	GTTAAC	1 cut(s)	516
HphI	GGTGA	1 cut(s)	464
Hpy166II	GTNNAC	3 cut(s)	355, 516, 639
Hpy188I	TCNGA	2 cut(s)	47, 117
Hpy188III	TCNNGA	1 cut(s)	319
Hpy8I	GTNNAC	3 cut(s)	355, 516, 639
HpyAV	CCTTC	2 cut(s)	256, 260
HpyCH4III	ACNGT	1 cut(s)	643
HpyCH4IV	ACGT	2 cut(s)	342, 512
HpyCH4V	TGCA	3 cut(s)	105, 557, 572
HpyF3I	CTNAG	2 cut(s)	114, 329
HpySE526I	ACGT	2 cut(s)	342, 512
KspAI	GTTAAC	1 cut(s)	516
Kzo9I	GATC	3 cut(s)	169, 547, 656
LpnPI	CCDG	8 cut(s)	115, 260, 354, 381, 435, 525, 552, 647
Lsp1109I	GCAGC	2 cut(s)	541, 584
MaeI	CTAG	1 cut(s)	53
MaeII	ACGT	2 cut(s)	342, 512
MaeIII	GTNAC	1 cut(s)	292
MalI	GATC	3 cut(s)	171, 549, 658
MboI	GATC	3 cut(s)	169, 547, 656
MboII	GAAGA	1 cut(s)	191
MhlI	GDGCHC	1 cut(s)	52
MluCI	AATT	7 cut(s)	139, 174, 187, 416, 592, 623, 685
MlyI	GAGTC	4 cut(s)	265, 300, 373, 581
MnlI	CCTC	3 cut(s)	32, 121, 397
MseI	TTAA	6 cut(s)	306, 380, 476, 515, 582, 684
MspCI	CTTAAG	2 cut(s)	379, 581
MspR9I	CCNGG	2 cut(s)	369, 540
MvaI	CCWGG	2 cut(s)	369, 540
NdeII	GATC	3 cut(s)	169, 547, 656
NlaIV	GGNNCC	1 cut(s)	544
NmeAIII	GCCGAG	1 cut(s)	640
NmuCI	GTSAC	1 cut(s)	292
PfeI	GAWTC	1 cut(s)	42
PflMI	CCANNNNNTGG	1 cut(s)	253
PkrI	GCNGC	4 cut(s)	13, 122, 556, 574
PleI	GAGTC	4 cut(s)	265, 299, 372, 581
PpsI	GAGTC	4 cut(s)	265, 299, 372, 581
PshBI	ATTAAT	1 cut(s)	306
PsiI	TTATAA	1 cut(s)	597
Psp1406I	AACGTT	1 cut(s)	512
Psp6I	CCWGG	2 cut(s)	367, 538
PspGI	CCWGG	2 cut(s)	367, 538
PspN4I	GGNNCC	1 cut(s)	544
PspPI	GGNCC	1 cut(s)	406
PstI	CTGCAG	1 cut(s)	107
PstNI	CAGNNNCTG	1 cut(s)	11
RsaI	GTAC	1 cut(s)	128
RsaNI	GTAC	1 cut(s)	127
SaqAI	TTAA	6 cut(s)	306, 380, 476, 515, 582, 684
SatI	GCNGC	4 cut(s)	12, 121, 555, 573
Sau3AI	GATC	3 cut(s)	169, 547, 656
Sau96I	GGNCC	1 cut(s)	406
SchI	GAGTC	4 cut(s)	265, 300, 373, 581
ScrFI	CCNGG	2 cut(s)	369, 540
SduI	GDGCHC	1 cut(s)	52
SetI	ASST	4 cut(s)	345, 515, 556, 577
SfcI	CTRYAG	1 cut(s)	103
SmlI	CTYRAG	2 cut(s)	379, 581
SmoI	CTYRAG	2 cut(s)	379, 581
SpeI	ACTAGT	1 cut(s)	52
Sse9I	AATT	7 cut(s)	139, 174, 187, 416, 592, 623, 685
SsiI	CCGC	1 cut(s)	121
SspMI	CTAG	1 cut(s)	53
StyD4I	CCNGG	2 cut(s)	367, 538
TaaI	ACNGT	1 cut(s)	643
TaiI	ACGT	2 cut(s)	345, 515
TaqI	TCGA	1 cut(s)	230
TasI	AATT	7 cut(s)	139, 174, 187, 416, 592, 623, 685
TatI	WGTACW	1 cut(s)	126
TauI	GCSGC	1 cut(s)	123
TfiI	GAWTC	1 cut(s)	42
Tru1I	TTAA	6 cut(s)	306, 380, 476, 515, 582, 684
Tru9I	TTAA	6 cut(s)	306, 380, 476, 515, 582, 684
TseFI	GTSAC	1 cut(s)	292
TseI	GCWGC	3 cut(s)	11, 554, 572
Tsp45I	GTSAC	1 cut(s)	292
TspDTI	ATGAA	5 cut(s)	38, 47, 481, 512, 615
Van91I	CCANNNNNTGG	1 cut(s)	253
Vha464I	CTTAAG	2 cut(s)	379, 581
VspI	ATTAAT	1 cut(s)	306
XcmI	CCANNNNNNNNNTGG	1 cut(s)	365
XmiI	GTMKAC	2 cut(s)	354, 638
XspI	CTAG	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.