Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0015760

Physical Location & Seq

Genomic Coordinates Reverse (-)

10813285 .. 10832985

Gene Structure 19701 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00008550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGAATCCCGGTGACTCAATCCGAGACGAACCGCCACGGGCAACGGAGCTCGGAGGTTGTTCAGCAAGACAACTTGAAGGTAGTCGACAAGCTCGTGAAGTAAGTAGGCACACTCGCCATCTCCTAAACCGGCGCTATCGAAAGGTCGCCACTTACTTTGCGAAGCCCTTCGCCGTCTCCCAAACTGGGAGAGAAACGACCGCAAGGGATTACAGCTTGCGCATGGGCATTTTGCACAAGTCCATCGTCGTTACGGTGGTTGTGAGGGACAAGGGTACTGTTGTGGACGTGTTTTTGACCAAGGGTTGGTATAACGGCGGGGAAGAGCTTGGGGTGGCTGGAATACTCGGGAAGGAACAAGAGATGTGGGAGACTGCGATAAGGGCTTGCAGTCGCATGTTGGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000814 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005770 GO:0005886 GO:0006508 GO:0006511 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007033 GO:0007034 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010008 GO:0010154 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0016197 GO:0019538 GO:0019941 GO:0022414 GO:0030163 GO:0031090 GO:0031410 GO:0031902 GO:0031982 GO:0032182 GO:0032501 GO:0032502 GO:0032509 GO:0032511 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0036452 GO:0042886 GO:0043130 GO:0043162 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043328 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045324 GO:0046907 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0061458 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0071944 GO:0071985 GO:0072594 GO:0072665 GO:0072666 GO:0090351 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

EAP30 Vps36_ESCRT-II

Protein Analysis

135

Amino Acids

15.11

Weight (kDa)

9.85

Isoelectric Point (pI)

36.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015760)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0036251
rosa_laevigata	RLG00000012092 RLG00000033373 RLG00000034843
rosa_roxburghii	Rroxscaffold_1G00008550 Rroxscaffold_1G00033210 Rroxscaffold_1G00033710 Rroxscaffold_1G00061800 Rroxscaffold_2G00110640 Rroxscaffold_2G00117290 Rroxscaffold_4G00286660 Rroxscaffold_4G00305950 Rroxscaffold_5G00345320 Rroxscaffold_5G00353480
rosa_samantha	Rh1DG239400 Rh7CG119800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	221
AccB7I	CCANNNNNTGG	1 cut(s)	306
AccI	GTMKAC	1 cut(s)	85
AciI	CCGC	3 cut(s)	32, 201, 318
AfaI	GTAC	1 cut(s)	277
AfiI	CCNNNNNNNGG	2 cut(s)	186, 306
AflIII	ACRYGT	1 cut(s)	288
AgsI	TTSAA	1 cut(s)	77
AjiI	CACGTC	1 cut(s)	289
AluBI	AGCT	4 cut(s)	49, 92, 216, 328
AluI	AGCT	4 cut(s)	49, 92, 216, 328
Alw21I	GWGCWC	1 cut(s)	51
Alw26I	GTCTC	3 cut(s)	18, 181, 365
Ama87I	CYCGRG	1 cut(s)	347
Asp700I	GAANNNNTTC	1 cut(s)	167
AspLEI	GCGC	2 cut(s)	135, 222
AsuC2I	CCSGG	1 cut(s)	9
AsuHPI	GGTGA	1 cut(s)	23
AvaI	CYCGRG	1 cut(s)	347
BaeI	ACNNNNGTAYC	2 cut(s)	267, 300
BanII	GRGCYC	1 cut(s)	51
BauI	CACGAG	1 cut(s)	93
Bbv12I	GWGCWC	1 cut(s)	51
BccI	CCATC	2 cut(s)	126, 251
BceAI	ACGGC	2 cut(s)	158, 331
BcnI	CCSGG	1 cut(s)	9
BcoDI	GTCTC	3 cut(s)	18, 181, 365
BfoI	RGCGCY	1 cut(s)	136
Bme1390I	CCNGG	1 cut(s)	9
BmeT110I	CYCGRG	1 cut(s)	347
BmgBI	CACGTC	1 cut(s)	289
BmrFI	CCNGG	1 cut(s)	9
BmrI	ACTGGG	1 cut(s)	195
BmuI	ACTGGG	1 cut(s)	195
BpuMI	CCSGG	1 cut(s)	9
BsaJI	CCNNGG	2 cut(s)	35, 300
Bsc4I	CCNNNNNNNGG	2 cut(s)	186, 306
Bse118I	RCCGGY	1 cut(s)	129
Bse1I	ACTGG	1 cut(s)	190
BseDI	CCNNGG	2 cut(s)	35, 300
BseLI	CCNNNNNNNGG	2 cut(s)	186, 306
BseNI	ACTGG	1 cut(s)	190
Bsh1285I	CGRYCG	1 cut(s)	201
BsiEI	CGRYCG	1 cut(s)	201
BsiHKAI	GWGCWC	1 cut(s)	51
BsiHKCI	CYCGRG	1 cut(s)	347
BsiSI	CCGG	2 cut(s)	9, 130
BslFI	GGGAC	1 cut(s)	281
BslI	CCNNNNNNNGG	2 cut(s)	186, 306
BsmAI	GTCTC	3 cut(s)	18, 181, 365
BsmBI	CGTCTC	2 cut(s)	18, 181
BsmFI	GGGAC	1 cut(s)	281
BsoBI	CYCGRG	1 cut(s)	347
Bsp1286I	GDGCHC	1 cut(s)	51
BspACI	CCGC	3 cut(s)	32, 201, 318
BspQI	GCTCTTC	1 cut(s)	318
BsrFI	RCCGGY	1 cut(s)	129
BsrI	ACTGG	1 cut(s)	190
BssAI	RCCGGY	1 cut(s)	129
BssECI	CCNNGG	2 cut(s)	35, 300
BssSI	CACGAG	1 cut(s)	93
BssT1I	CCWWGG	1 cut(s)	300
Bst2BI	CACGAG	1 cut(s)	93
Bst4CI	ACNGT	2 cut(s)	256, 280
Bst6I	CTCTTC	1 cut(s)	318
BstC8I	GCNNGC	2 cut(s)	218, 388
BstDSI	CCRYGG	1 cut(s)	35
BstH2I	RGCGCY	1 cut(s)	136
BstHHI	GCGC	2 cut(s)	135, 222
BstMAI	GTCTC	3 cut(s)	18, 181, 365
BstMCI	CGRYCG	1 cut(s)	201
BstMWI	GCNNNNNNNGC	1 cut(s)	383
BstNSI	RCATGY	1 cut(s)	400
BstSCI	CCNGG	1 cut(s)	7
BtgI	CCRYGG	1 cut(s)	35
BtrI	CACGTC	1 cut(s)	289
Cac8I	GCNNGC	2 cut(s)	218, 388
CfoI	GCGC	2 cut(s)	135, 222
Cfr10I	RCCGGY	1 cut(s)	129
Csp6I	GTAC	1 cut(s)	276
CspCI	CAANNNNNGTGG	4 cut(s)	139, 174, 347, 382
CviAII	CATG	2 cut(s)	223, 397
CviJI	RGCY	7 cut(s)	49, 92, 166, 216, 328, 338, 386
CviKI_1	RGCY	7 cut(s)	49, 92, 166, 216, 328, 338, 386
CviQI	GTAC	1 cut(s)	276
Eam1104I	CTCTTC	1 cut(s)	318
EarI	CTCTTC	1 cut(s)	318
Ecl136II	GAGCTC	1 cut(s)	49
Eco130I	CCWWGG	1 cut(s)	300
Eco24I	GRGCYC	1 cut(s)	51
Eco53kI	GAGCTC	1 cut(s)	49
Eco88I	CYCGRG	1 cut(s)	347
EcoICRI	GAGCTC	1 cut(s)	49
EcoT14I	CCWWGG	1 cut(s)	300
EcoT38I	GRGCYC	1 cut(s)	51
ErhI	CCWWGG	1 cut(s)	300
Esp3I	CGTCTC	2 cut(s)	18, 181
FaeI	CATG	2 cut(s)	226, 400
FaiI	YATR	3 cut(s)	224, 312, 398
FaqI	GGGAC	1 cut(s)	281
FatI	CATG	2 cut(s)	222, 396
FauI	CCCGC	1 cut(s)	311
FblI	GTMKAC	1 cut(s)	85
FriOI	GRGCYC	1 cut(s)	51
FspI	TGCGCA	1 cut(s)	221
GlaI	GCGC	2 cut(s)	134, 221
HaeII	RGCGCY	1 cut(s)	136
HapII	CCGG	2 cut(s)	9, 130
HhaI	GCGC	2 cut(s)	135, 222
Hin1II	CATG	2 cut(s)	226, 400
Hin6I	GCGC	2 cut(s)	133, 220
HinP1I	GCGC	2 cut(s)	133, 220
HincII	GTYRAC	1 cut(s)	86
HindII	GTYRAC	1 cut(s)	86
HinfI	GANTC	2 cut(s)	4, 14
HpaII	CCGG	2 cut(s)	9, 130
HphI	GGTGA	1 cut(s)	23
Hpy166II	GTNNAC	2 cut(s)	86, 286
Hpy188I	TCNGA	2 cut(s)	23, 53
Hpy188III	TCNNGA	2 cut(s)	95, 349
Hpy8I	GTNNAC	2 cut(s)	86, 286
Hpy99I	CGWCG	1 cut(s)	251
HpyAV	CCTTC	3 cut(s)	71, 178, 346
HpyCH4III	ACNGT	2 cut(s)	256, 280
HpyCH4IV	ACGT	1 cut(s)	288
HpyCH4V	TGCA	2 cut(s)	235, 390
HpyF10VI	GCNNNNNNNGC	1 cut(s)	383
HpySE526I	ACGT	1 cut(s)	288
Hsp92II	CATG	2 cut(s)	226, 400
HspAI	GCGC	2 cut(s)	133, 220
LguI	GCTCTTC	1 cut(s)	318
LmnI	GCTCC	1 cut(s)	46
LpnPI	CCDG	4 cut(s)	22, 143, 171, 324
MaeII	ACGT	1 cut(s)	288
MaeIII	GTNAC	2 cut(s)	11, 250
MboII	GAAGA	1 cut(s)	335
MhlI	GDGCHC	1 cut(s)	51
MlyI	GAGTC	1 cut(s)	8
MnlI	CCTC	2 cut(s)	47, 258
MroXI	GAANNNNTTC	1 cut(s)	167
MspI	CCGG	2 cut(s)	9, 130
MspR9I	CCNGG	1 cut(s)	9
MwoI	GCNNNNNNNGC	1 cut(s)	383
NciI	CCSGG	1 cut(s)	9
NlaIII	CATG	2 cut(s)	226, 400
NmuCI	GTSAC	1 cut(s)	11
NsbI	TGCGCA	1 cut(s)	221
NspI	RCATGY	1 cut(s)	400
PciSI	GCTCTTC	1 cut(s)	318
PcsI	WCGNNNNNNNCGW	1 cut(s)	91
PdmI	GAANNNNTTC	1 cut(s)	167
PfeI	GAWTC	1 cut(s)	4
PflMI	CCANNNNNTGG	1 cut(s)	306
PleI	GAGTC	1 cut(s)	8
PpsI	GAGTC	1 cut(s)	8
Psp124BI	GAGCTC	1 cut(s)	51
RsaI	GTAC	1 cut(s)	277
RsaNI	GTAC	1 cut(s)	276
SacI	GAGCTC	1 cut(s)	51
SalI	GTCGAC	1 cut(s)	84
SapI	GCTCTTC	1 cut(s)	318
SchI	GAGTC	1 cut(s)	8
ScrFI	CCNGG	1 cut(s)	9
SduI	GDGCHC	1 cut(s)	51
SetI	ASST	8 cut(s)	51, 58, 82, 94, 147, 218, 291, 330
SsiI	CCGC	3 cut(s)	32, 201, 318
SstI	GAGCTC	1 cut(s)	51
StyD4I	CCNGG	1 cut(s)	7
StyI	CCWWGG	1 cut(s)	300
TaaI	ACNGT	2 cut(s)	256, 280
TaiI	ACGT	1 cut(s)	291
TaqI	TCGA	2 cut(s)	85, 139
TfiI	GAWTC	1 cut(s)	4
TseFI	GTSAC	1 cut(s)	11
Tsp45I	GTSAC	1 cut(s)	11
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	59
Van91I	CCANNNNNTGG	1 cut(s)	306
XceI	RCATGY	1 cut(s)	400
XmiI	GTMKAC	1 cut(s)	85
XmnI	GAANNNNTTC	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.